Rh7DG307100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000404
Physical Location & Seq
Forward (+)
35859447 .. 35860649
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG307100.1

Sequence Viewer

Length: 243 bp
ATGTTTTCAGAGCATGGATCCCTTGGTTTCCCTGCAAGAAGAATCAAGTGTTCTCAAGGAAAGAGTCCAAGAGCTATTGTGAAGATTGGCATCATTAGCAGCATTGTTCAGCCCAGTGGTGAAGCTCAAGAAAGAAGGATTCCGGCCAGTGGAAAAGGAATCCAACTGGGTGGAGAGTCAAAGGGCAATGCTCATTGGTGTGGCTACCCCAACCGCATTGATGGCGACCAGATTTATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.55

Weight (kDa)

9.69

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 214
AclWI GGATC 2 cut(s) 12, 25
AcoI YGGCCR 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 74, 125
AluI AGCT 2 cut(s) 74, 125
AlwI GGATC 2 cut(s) 12, 25
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 131
BamHI GGATCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 215
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 19
BmrI ACTGGG 2 cut(s) 108, 176
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 2 cut(s) 108, 176
BpuEI CTTGAG 2 cut(s) 39, 111
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 3 cut(s) 114, 147, 171
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 193
BseNI ACTGG 3 cut(s) 114, 147, 171
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 214
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 2 cut(s) 12, 25
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 3 cut(s) 114, 147, 171
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 22
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 96, 222
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 17
BstXI CCANNNNNNTGG 2 cut(s) 170, 236
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 121, 154
CviAII CATG 1 cut(s) 14
CviJI RGCY 5 cut(s) 74, 112, 125, 146, 204
CviKI_1 RGCY 5 cut(s) 74, 112, 125, 146, 204
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 237
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 143
Hin1II CATG 1 cut(s) 17
HinfI GANTC 5 cut(s) 42, 64, 139, 159, 176
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 222
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 45, 127, 152, 156, 160
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 99
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 51, 94
MflI RGATCY 1 cut(s) 17
MlyI GAGTC 2 cut(s) 73, 185
MmeI TCCRAC 1 cut(s) 187
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 96, 222
NdeII GATC 1 cut(s) 17
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 19
PfeI GAWTC 3 cut(s) 42, 139, 159
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 2 cut(s) 72, 184
PpsI GAGTC 2 cut(s) 72, 184
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 1 cut(s) 17
SchI GAGTC 2 cut(s) 73, 185
SetI ASST 2 cut(s) 76, 127
SfaNI GCATC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 54, 126
SmoI CTYRAG 2 cut(s) 54, 126
SsiI CCGC 1 cut(s) 214
StyI CCWWGG 1 cut(s) 22
TfiI GAWTC 3 cut(s) 42, 139, 159
TscAI CASTG 2 cut(s) 121, 154
TseI GCWGC 1 cut(s) 99
TspRI CASTG 2 cut(s) 121, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.