FvH4_7g06240

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000404
Physical Location & Seq
Forward (+)
6355151 .. 6356802
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06240.t1

Sequence Viewer

Length: 996 bp
ATGGAGACTAGAGAAGATCACAATGGAGACGATACAGTAAGACTGTACCACGCATCAGTGAAAGGATCAATTCCATCACTGAAAAATATGATCCAAAAGGATCCACTGATTCTCAGAAGAGTTTCTCTGACTCCCTTGAGTGAAACCCCATTGCATGTTTCAACTTTGCTTGGCCACCTTGAGTTTTCTAAAATCATTCTCACTCATAATCCAAGACTTGCCACGGAGTTAGACTCCTTAACGCGGTCACCCCTGCACTTGGCTTCGGCAGAAGGACACAAGGAGCTCGTACAAGTTTTGTTGCCGGCATTTCCTGATGCATGCATGTTACGTGATCAGGAAGGGAGAATCCCTCTGCACTATGCTGCCATGAGAGGACGCATTGAGGTGGTCATGGAGCTGATGCGTGCAAAGCCTCAGTCCATTGCTCTTCCGGTTCTCGACAGATCAGGACAAACGAGTCTGCATTTATGTGTTAAACATAACCATCTGGACTGCTTGAAATTTTTGGTGAATGAAGTGGGAGAGGATAGCGACCTACTCAACTCAGGAACTGGCTCTAATGAGAGCATGACAATCATACGCTTAGCTATCATGCTAAGGCAAATTGAGACGGCTGAAACCTCCTTTCCTCCACCACCAACCACTGCCTCTTCGCCTCAAGAGAGCGCACGCCCACCACCAATTTCCACCTCCGGCATGTCGGTTAGGATGTCGCCCACCCACAGATCATCTCCGAGCTGCTCAACCCAAATCAAATCTAAAAGACCCGATCAAGGCATGGTATGGGATCTCTGCCACGCCGCCACACTGTCATCACCACCCGGTGATCTCCAATTCGACAGCAAAGCTTCAGACCACCCATCAAACAATCCGAGTAAAATCTGGGATACCACGACCTCCACCTTCTCTCGTCAACCATCATCCCTCCGCCATCATTCACGTCTTCCCCCGCCGATCTTGACAAAGACACCGTCCTTGCAGTTTCGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

332

Amino Acids

36.62

Weight (kDa)

8.61

Isoelectric Point (pI)

67.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 102 4.7e-08 Ankyrin repeats (3 copies)
Ank_4 PF13637 85 - 131 6.7e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 110 - 177 1.1e-11 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 459
AccII CGCG 1 cut(s) 244
AciI CCGC 4 cut(s) 244, 804, 931, 953
AclWI GGATC 5 cut(s) 73, 85, 95, 108, 798
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 837
AdeI CACNNNGTG 1 cut(s) 827
AfaI GTAC 2 cut(s) 47, 291
AfiI CCNNNNNNNGG 3 cut(s) 243, 259, 776
AgsI TTSAA 2 cut(s) 162, 502
AjiI CACGTC 1 cut(s) 944
AluBI AGCT 5 cut(s) 286, 400, 590, 741, 851
AluI AGCT 5 cut(s) 286, 400, 590, 741, 851
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 21, 605
AlwI GGATC 5 cut(s) 73, 85, 95, 108, 798
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 365, 741
ApoI RAATTY 1 cut(s) 503
ArsI GACNNNNNNTTYG 4 cut(s) 404, 436, 959, 991
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 671
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 4 cut(s) 240, 523, 810, 839
BalI TGGCCA 1 cut(s) 174
BamHI GGATCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 938
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 352, 728
BccI CCATC 5 cut(s) 82, 495, 871, 928, 942
BceAI ACGGC 1 cut(s) 630
BciVI GTATCC 1 cut(s) 883
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 2 cut(s) 21, 605
BfaI CTAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 883
BisI GCNGC 3 cut(s) 366, 742, 804
BlpI GCTNAGC 1 cut(s) 586
BlsI GCNGC 3 cut(s) 367, 743, 805
Bme1390I CCNGG 1 cut(s) 825
BmgBI CACGTC 1 cut(s) 944
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 825
BmsI GCATC 3 cut(s) 62, 307, 393
BpiI GAAGAC 1 cut(s) 938
BplI GAGNNNNNCTC 4 cut(s) 218, 250, 337, 369
Bpu10I CCTNAGC 1 cut(s) 599
Bpu1102I GCTNAGC 1 cut(s) 586
BpuEI CTTGAG 3 cut(s) 157, 200, 645
BpuMI CCSGG 1 cut(s) 825
BsaAI YACGTR 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 259, 776
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 2 cut(s) 149, 423
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 717, 923
BseLI CCNNNNNNNGG 3 cut(s) 243, 259, 776
BseMI GCAATG 2 cut(s) 149, 423
BseMII CTCAG 3 cut(s) 127, 431, 561
BseNI ACTGG 1 cut(s) 559
BseXI GCAGC 2 cut(s) 352, 728
BsgI GTGCAG 2 cut(s) 239, 341
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 4 cut(s) 305, 434, 696, 825
BslI CCNNNNNNNGG 3 cut(s) 243, 259, 776
BsmAI GTCTC 2 cut(s) 21, 605
BsmBI CGTCTC 2 cut(s) 21, 605
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 288
Bsp1720I GCTNAGC 1 cut(s) 586
BspACI CCGC 4 cut(s) 244, 804, 931, 953
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 3 cut(s) 126, 430, 560
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 5 cut(s) 73, 85, 95, 108, 798
BspQI GCTCTTC 1 cut(s) 435
BsrDI GCAATG 2 cut(s) 149, 423
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 222
Bst4CI ACNGT 4 cut(s) 37, 45, 813, 975
Bst6I CTCTTC 3 cut(s) 112, 435, 658
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 4 cut(s) 306, 322, 408, 673
BstDEI CTNAG 5 cut(s) 113, 417, 547, 586, 599
BstDSI CCRYGG 1 cut(s) 222
BstEII GGTNACC 1 cut(s) 246
BstF5I GGATG 2 cut(s) 717, 923
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 671
BstMAI GTCTC 2 cut(s) 21, 605
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNSI RCATGY 4 cut(s) 158, 324, 328, 703
BstPI GGTNACC 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 823
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 352, 728
BstV2I GAAGAC 1 cut(s) 938
BstX2I RGATCY 2 cut(s) 100, 790
BstYI RGATCY 2 cut(s) 100, 790
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 944
BtsCI GGATG 2 cut(s) 717, 923
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 5 cut(s) 63, 77, 104, 645, 809
Cac8I GCNNGC 4 cut(s) 306, 322, 408, 673
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 1 cut(s) 671
Cfr10I RCCGGY 1 cut(s) 304
CseI GACGC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 46, 290
CviAII CATG 9 cut(s) 155, 321, 325, 370, 394, 571, 595, 700, 781
CviQI GTAC 2 cut(s) 46, 290
DdeI CTNAG 5 cut(s) 113, 417, 547, 586, 599
DraIII CACNNNGTG 1 cut(s) 827
DrdI GACNNNNNNGTC 1 cut(s) 459
DseDI GACNNNNNNGTC 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 3 cut(s) 112, 435, 658
EarI CTCTTC 3 cut(s) 112, 435, 658
EciI GGCGGA 1 cut(s) 920
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 837
Eco91I GGTNACC 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 246
EcoT22I ATGCAT 2 cut(s) 322, 326
EcoT38I GRGCYC 1 cut(s) 288
Esp3I CGTCTC 2 cut(s) 21, 605
FaeI CATG 9 cut(s) 158, 324, 328, 373, 397, 574, 598, 703, 784
FatI CATG 9 cut(s) 154, 320, 324, 369, 393, 570, 594, 699, 780
FauI CCCGC 1 cut(s) 960
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 366, 742, 804
FokI GGATG 2 cut(s) 724, 910
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 366, 742, 804
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 670
GluI GCNGC 3 cut(s) 366, 742, 804
HaeIII GGCC 1 cut(s) 174
HapII CCGG 4 cut(s) 305, 434, 696, 825
HgaI GACGC 1 cut(s) 387
HhaI GCGC 1 cut(s) 671
Hin1II CATG 9 cut(s) 158, 324, 328, 373, 397, 574, 598, 703, 784
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HincII GTYRAC 1 cut(s) 917
HindII GTYRAC 1 cut(s) 917
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 5 cut(s) 109, 130, 233, 348, 460
HpaII CCGG 4 cut(s) 305, 434, 696, 825
HphI GGTGA 4 cut(s) 240, 523, 810, 839
Hpy166II GTNNAC 1 cut(s) 917
Hpy188I TCNGA 5 cut(s) 116, 129, 738, 856, 876
Hpy188III TCNNGA 8 cut(s) 314, 338, 440, 450, 491, 549, 662, 961
Hpy8I GTNNAC 1 cut(s) 917
Hpy99I CGWCG 1 cut(s) 993
HpyAV CCTTC 3 cut(s) 266, 335, 916
HpyCH4III ACNGT 4 cut(s) 37, 45, 813, 975
HpyCH4IV ACGT 3 cut(s) 331, 943, 991
HpyCH4V TGCA 8 cut(s) 154, 256, 320, 324, 358, 410, 466, 982
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 5 cut(s) 113, 417, 547, 586, 599
HpySE526I ACGT 3 cut(s) 331, 943, 991
Hsp92II CATG 9 cut(s) 158, 324, 328, 373, 397, 574, 598, 703, 784
HspAI GCGC 1 cut(s) 669
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 2 cut(s) 283, 397
Lsp1109I GCAGC 2 cut(s) 352, 728
LweI GCATC 3 cut(s) 62, 307, 393
MaeI CTAG 1 cut(s) 9
MaeII ACGT 3 cut(s) 331, 943, 991
MaeIII GTNAC 2 cut(s) 246, 327
MboII GAAGA 5 cut(s) 26, 129, 422, 645, 938
MflI RGATCY 2 cut(s) 100, 790
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 5 cut(s) 69, 503, 606, 684, 836
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 3 cut(s) 124, 227, 469
Mox20I TGGCCA 1 cut(s) 174
Mph1103I ATGCAT 2 cut(s) 322, 326
MroNI GCCGGC 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 174
MseI TTAA 2 cut(s) 239, 477
MslI CAYNNNNRTG 2 cut(s) 386, 471
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 4 cut(s) 305, 434, 696, 825
MspR9I CCNGG 1 cut(s) 825
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 412
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 825
NgoMIV GCCGGC 1 cut(s) 304
NlaIII CATG 9 cut(s) 158, 324, 328, 373, 397, 574, 598, 703, 784
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 246
NsiI ATGCAT 2 cut(s) 322, 326
NspI RCATGY 4 cut(s) 158, 324, 328, 703
PaeI GCATGC 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 109, 348
PflFI GACNNNGTC 1 cut(s) 973
PkrI GCNGC 3 cut(s) 367, 743, 805
PleI GAGTC 3 cut(s) 124, 227, 468
PpsI GAGTC 3 cut(s) 124, 227, 468
Ppu21I YACGTR 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 288
PspEI GGTNACC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 2 cut(s) 100, 790
PsyI GACNNNGTC 1 cut(s) 973
RsaI GTAC 2 cut(s) 47, 291
RsaNI GTAC 2 cut(s) 46, 290
RseI CAYNNNNRTG 2 cut(s) 386, 471
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 239, 477
SatI GCNGC 3 cut(s) 366, 742, 804
SchI GAGTC 3 cut(s) 124, 227, 469
ScrFI CCNGG 1 cut(s) 825
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 3 cut(s) 62, 307, 393
SmiMI CAYNNNNRTG 2 cut(s) 386, 471
SmlI CTYRAG 3 cut(s) 136, 179, 660
SmoI CTYRAG 3 cut(s) 136, 179, 660
SphI GCATGC 1 cut(s) 324
Sse9I AATT 5 cut(s) 69, 503, 606, 684, 836
SsiI CCGC 4 cut(s) 244, 804, 931, 953
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 823
TaaI ACNGT 4 cut(s) 37, 45, 813, 975
TaiI ACGT 3 cut(s) 334, 946, 994
TaqI TCGA 3 cut(s) 441, 840, 988
TasI AATT 5 cut(s) 69, 503, 606, 684, 836
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 2 cut(s) 109, 348
Tru1I TTAA 2 cut(s) 239, 477
Tru9I TTAA 2 cut(s) 239, 477
TscAI CASTG 5 cut(s) 63, 84, 111, 652, 816
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 2 cut(s) 365, 741
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 531
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 5 cut(s) 63, 84, 111, 652, 816
Tth111I GACNNNGTC 1 cut(s) 973
XapI RAATTY 1 cut(s) 503
XceI RCATGY 4 cut(s) 158, 324, 328, 703
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 2 cut(s) 322, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.