Rh1DG179100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000404
Physical Location & Seq
Forward (+)
36377585 .. 36388291
10707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG179100.1

Sequence Viewer

Length: 702 bp
ATGCAATGCTTGAAGTACAACAAGGATGATCGTTGGTTTGAAGAGATACGCGGCATGTTGATGGTTGTCGCTACCATGATATCAACCATGACTTTCCAAGTAGCCATCAACCCACCAGGTGGTGTTTGGCAAGATCATGTCAAATCATTTAGCATTGAAGGAACAAAATACTGTACAGAAAACCCTTGCTTTCCTGGAACTGCAGTGTTGGGCGATGTGTGGACACCCGACATGCGGGAATTCATTAAGTACAACACCATCTCTTTCGTTGCTTCTCTCAGTGTTACCATTTTTCTTATCAGCGGCTTTCCTCTGACAAATCGGATATGTATATGGATCTTATCAATGGCTATGTGCATCACTATCACATTCACTGCTCTTACTTACCTAACTGGTGTTTACTTGGTGATGCCATTTGCTGTTGCGGATGATGTTGACAGTAAGTACAGACCATTAGGAGTTCAGGTTTGGATTGGATTGCTTGCTATGGTTGGTTTATTCCATACTTTTCGTTTTCTCACTTGGCTTGTGAAGAAGGTGAACTCCAAGTTCAGAGATAAGAGCAGGGCAAATGCAAAAGGCTTTGAAGGTGATAAAGCTACAGGTCCGGCGACATCGATGGCTGCTTACTGTGCGCCTTCTCCCCTTAAGGGATGCTGGAGGTTAGGCCATGCTGTTGGGCCCTTGTTGGTAGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

233

Amino Acids

25.99

Weight (kDa)

8.82

Isoelectric Point (pI)

25.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 11 - 136 1.1e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AccI GTMKAC 1 cut(s) 693
AccII CGCG 1 cut(s) 51
AciI CCGC 4 cut(s) 51, 235, 303, 425
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 4 cut(s) 17, 175, 251, 446
AfiI CCNNNNNNNGG 3 cut(s) 119, 234, 650
AflII CTTAAG 1 cut(s) 647
AgsI TTSAA 4 cut(s) 13, 41, 158, 587
AjnI CCWGG 2 cut(s) 115, 193
AluBI AGCT 1 cut(s) 599
AluI AGCT 1 cut(s) 599
AlwI GGATC 1 cut(s) 344
AoxI GGCC 2 cut(s) 667, 680
ApaI GGGCCC 1 cut(s) 684
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 1 cut(s) 239
AspLEI GCGC 1 cut(s) 637
AspS9I GGNCC 3 cut(s) 605, 680, 681
AsuHPI GGTGA 3 cut(s) 418, 550, 602
AvaII GGWCC 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 684
BanII GRGCYC 1 cut(s) 684
BbvI GCAGC 1 cut(s) 610
BccI CCATC 4 cut(s) 55, 113, 266, 613
BciT130I CCWGG 2 cut(s) 117, 195
BfmI CTRYAG 2 cut(s) 201, 600
BfrI CTTAAG 1 cut(s) 647
BisI GCNGC 3 cut(s) 52, 304, 624
BlsI GCNGC 3 cut(s) 53, 305, 625
Bme1390I CCNGG 2 cut(s) 117, 195
Bme18I GGWCC 1 cut(s) 605
BmgT120I GGNCC 3 cut(s) 605, 680, 681
BmiI GGNNCC 1 cut(s) 682
BmrFI CCNGG 2 cut(s) 117, 195
BmsI GCATC 3 cut(s) 366, 399, 644
BpmI CTGGAG 1 cut(s) 679
Bsa29I ATCGAT 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 234, 650
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 117, 195
BseCI ATCGAT 1 cut(s) 617
BseGI GGATG 3 cut(s) 31, 433, 659
BseLI CCNNNNNNNGG 3 cut(s) 119, 234, 650
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 397
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 1 cut(s) 610
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 669, 682
BshVI ATCGAT 1 cut(s) 617
BsiSI CCGG 1 cut(s) 608
BslI CCNNNNNNNGG 3 cut(s) 119, 234, 650
BsnI GGCC 2 cut(s) 669, 682
Bsp120I GGGCCC 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 684
Bsp1407I TGTACA 1 cut(s) 173
Bsp143I GATC 3 cut(s) 28, 133, 336
BspACI CCGC 4 cut(s) 51, 235, 303, 425
BspANI GGCC 2 cut(s) 669, 682
BspCNI CTCAG 1 cut(s) 291
BspDI ATCGAT 1 cut(s) 617
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 682
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 344
BspTI CTTAAG 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 173
BsrI ACTGG 1 cut(s) 397
BssMI GATC 3 cut(s) 28, 133, 336
Bst2UI CCWGG 2 cut(s) 117, 195
Bst4CI ACNGT 3 cut(s) 173, 440, 632
Bst6I CTCTTC 1 cut(s) 36
BstAFI CTTAAG 1 cut(s) 647
BstAUI TGTACA 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 278, 699
BstF5I GGATG 3 cut(s) 31, 433, 659
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 637
BstKTI GATC 3 cut(s) 31, 136, 339
BstMBI GATC 3 cut(s) 28, 133, 336
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 2 cut(s) 117, 195
BstNSI RCATGY 2 cut(s) 58, 235
BstSCI CCNGG 2 cut(s) 115, 193
BstSFI CTRYAG 2 cut(s) 201, 600
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 336
BstXI CCANNNNNNTGG 1 cut(s) 677
BstYI RGATCY 1 cut(s) 336
Bsu15I ATCGAT 1 cut(s) 617
BsuRI GGCC 2 cut(s) 669, 682
BsuTUI ATCGAT 1 cut(s) 617
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 3 cut(s) 31, 433, 659
BtsI GCAGTG 2 cut(s) 210, 372
BtsIMutI CAGTG 3 cut(s) 210, 286, 372
Cac8I GCNNGC 1 cut(s) 483
CfoI GCGC 1 cut(s) 637
Cfr13I GGNCC 3 cut(s) 605, 680, 681
ClaI ATCGAT 1 cut(s) 617
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 4 cut(s) 16, 174, 250, 445
CviAII CATG 6 cut(s) 55, 76, 88, 137, 232, 671
CviJI RGCY 9 cut(s) 104, 306, 350, 526, 582, 599, 623, 669, 682
CviKI_1 RGCY 9 cut(s) 104, 306, 350, 526, 582, 599, 623, 669, 682
CviQI GTAC 4 cut(s) 16, 174, 250, 445
DdeI CTNAG 2 cut(s) 278, 699
DpnI GATC 3 cut(s) 30, 135, 338
DpnII GATC 3 cut(s) 28, 133, 336
DraIII CACNNNGTG 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 684
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 115, 193
EcoRV GATATC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 684
FaeI CATG 6 cut(s) 58, 79, 91, 140, 235, 674
FatI CATG 6 cut(s) 54, 75, 87, 136, 231, 670
FauI CCCGC 1 cut(s) 228
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 52, 304, 624
FokI GGATG 3 cut(s) 38, 440, 666
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 3 cut(s) 52, 304, 624
GlaI GCGC 1 cut(s) 636
GluI GCNGC 3 cut(s) 52, 304, 624
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 2 cut(s) 669, 682
HapII CCGG 1 cut(s) 608
HhaI GCGC 1 cut(s) 637
Hin1II CATG 6 cut(s) 58, 79, 91, 140, 235, 674
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 1 cut(s) 695
HpaII CCGG 1 cut(s) 608
HphI GGTGA 3 cut(s) 418, 550, 602
Hpy166II GTNNAC 5 cut(s) 222, 400, 436, 541, 694
Hpy188I TCNGA 3 cut(s) 315, 324, 554
Hpy8I GTNNAC 5 cut(s) 222, 400, 436, 541, 694
HpyAV CCTTC 4 cut(s) 152, 529, 581, 648
HpyCH4III ACNGT 3 cut(s) 173, 440, 632
HpyCH4V TGCA 4 cut(s) 4, 203, 357, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 2 cut(s) 278, 699
Hsp92II CATG 6 cut(s) 58, 79, 91, 140, 235, 674
HspAI GCGC 1 cut(s) 635
Kzo9I GATC 3 cut(s) 28, 133, 336
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 3 cut(s) 366, 399, 644
MabI ACCWGGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 283
MalI GATC 3 cut(s) 30, 135, 338
MboI GATC 3 cut(s) 28, 133, 336
MboII GAAGA 2 cut(s) 53, 544
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 1 cut(s) 239
MlyI GAGTC 1 cut(s) 689
MnlI CCTC 2 cut(s) 321, 654
MseI TTAA 2 cut(s) 246, 648
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 2 cut(s) 117, 195
MvaI CCWGG 2 cut(s) 117, 195
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 632
NdeII GATC 3 cut(s) 28, 133, 336
NlaIII CATG 6 cut(s) 58, 79, 91, 140, 235, 674
NlaIV GGNNCC 1 cut(s) 682
NspI RCATGY 2 cut(s) 58, 235
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 193
PkrI GCNGC 3 cut(s) 53, 305, 625
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 115, 193
PspGI CCWGG 2 cut(s) 115, 193
PspN4I GGNNCC 1 cut(s) 682
PspOMI GGGCCC 1 cut(s) 680
PspPI GGNCC 3 cut(s) 605, 680, 681
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 4 cut(s) 17, 175, 251, 446
RsaNI GTAC 4 cut(s) 16, 174, 250, 445
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 2 cut(s) 246, 648
SatI GCNGC 3 cut(s) 52, 304, 624
Sau3AI GATC 3 cut(s) 28, 133, 336
Sau96I GGNCC 3 cut(s) 605, 680, 681
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 2 cut(s) 117, 195
SduI GDGCHC 1 cut(s) 684
SetI ASST 8 cut(s) 121, 390, 468, 540, 592, 601, 607, 665
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 3 cut(s) 366, 399, 644
SfcI CTRYAG 2 cut(s) 201, 600
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 1 cut(s) 239
SsiI CCGC 4 cut(s) 51, 235, 303, 425
StyD4I CCNGG 2 cut(s) 115, 193
TaaI ACNGT 3 cut(s) 173, 440, 632
TaqI TCGA 1 cut(s) 617
TasI AATT 1 cut(s) 239
TatI WGTACW 4 cut(s) 15, 173, 249, 444
TauI GCSGC 2 cut(s) 54, 306
Tru1I TTAA 2 cut(s) 246, 648
Tru9I TTAA 2 cut(s) 246, 648
TscAI CASTG 3 cut(s) 210, 286, 379
TseI GCWGC 1 cut(s) 623
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 3 cut(s) 210, 286, 379
Van91I CCANNNNNTGG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 1 cut(s) 239
XceI RCATGY 2 cut(s) 58, 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.