FvH4_1g10461
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000469
Physical Location & Seq
Reverse (-)
5719900 .. 5722578
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10461.t1

Sequence Viewer

Length: 1986 bp
ATGGGAAGAAAGAAGATTATTGGTGACAATTGCATTGAGATGATCAACCTTGAAAATGGGCAAAGTGGAACTAAATCAGCTACCTGGAATCCTCAAACCGTAGCTATATTTTGCGACTTATGTATCAAAGAACTTAGGAAAGGACAAAGGCCTGGTACTCACTTTAATAAAGAAGGATGGGCTAGCTTGGTTGCAAACTTTCATGCAGAGACTGGAAATAACTATGACAAATCACAATTGAAGAACAAGTGGGATTTACTAAAAAAAGAATGGAAATTATGGAAAGATCTGATTGGGAAGGAAACTGGCCTTGGTTGGAATCCCACTAAAAATACTGTTGATGCATCAGATGAATGGTGGAGGAATAAAATCCAGATAAATCCACAATATGCGAAATTGCGTGTTCGAGGCATCAATCCTGATATGGAGGCGAAGTTGGATATGATGTTTAATGGCGCTGTAGCTACCGGTAAATATGCTTGGGCTCCTTCTTCTGATCTGCCACCGCCTCAAAATGAGAAAGCTCCAAAGGACAACGTTATTTCGTTGGATGATAATCTTGATTATGAGGAGTTTGACCTCAATGAAAGTCCACAGTCAGCTCAAGTTACCAAAGAGACAGGAAAGAAGCGAGCAAATGGTCAACTTGACACAGAAGGGCTGAAAGAGAAAAAGGCTAAAATGGGAGGTGCCGCGAAATTGTCCCTACAAATTAATCGTCTTGTTGAGGTAGTTGAGGCTAGGAGTACCACAACATCTGCATTGATAAAAGGTTCACAATCTACTAGTGTTTCTGAAGTAATGAAGGTTATGGATATGGACATTTTAGAGGAGGAGGAAGAGGAGAGTAGTAGAATTATTTGCATTTGTGCTTCTATGATAGAAATGTATCATGAAAAGTATATTCATAAGGTCCCTTGTATGAATTCTTTATACACTGGTAACATTTGGGTGATGGAATTACAATCAAGGAATGACACTCGTTGTCATAACATGTTCCGGATGAACAAAGATGTATTCTTTAAATTGTGTGATGATTTGAAGAATACTTATAAGGTGAAAGCTTCCCGGAGAATAAGTGTGGCTGAGAAGGTGGCAATGTTTTTGTACACTTTAGGAGGAGGTGAAGCAAACAGAAGTGTACAAGAGCGATTTCAACACTCTGGTGAGACAGTTAGTAGATACTTCAATAAAATGCTCAATGTGATATATGATGTCATGGCAAAAGATTTCATCAAGCCATTAGATCCCGAGTTCAAAAGCACTCCACCTGAAATACTTGGTGATTCTAGATATATGTCTCACTTTAAGGATTGTATTGGAGCTATAGATGGCGTGCATGTTCATGCAACTATATCACCATCAGATCAAGTACCATACATTGGCAAAAAAGGAATACCGACTCAGAATATAATGGCAGTATGCAACTTTGACATGCAATTTACATTTGCATGTGCAGGTTGGGAAGGCACTGCCCACGATGCAAGAATATTCCAATCAGTAATTCACAATCCAGCTTTGAACTTTCCTAAACCTCCAAGTGGAAAATACTATTTGGTGGATGCAGGATACCCACAAATGAAAGGGTATTTGGGACCATACAAGTGTCAAAGGTATCATCTTCCTGAATTTCGCAGAGGTGCTCAACCAACAGGTTATAAAGAGGTATTTAATCATGCACACTCTTCCCTCAGGGGCGTTATTGAACGCACTTTTGGTGTGTTTAAAAAAAGATGGAATATTTTACGGGACATGCCAAGTTACTCATTTGATAAGCAAGTTAAAATTGTTATAGCAACAATGACACTTCACAACTATATAAGAAGGTATGCCGTACGTGATTTAGTTTTTGATGAAAGTGAAACCTTTGATGACATTGAAGAGGATGGGAGAGAGGATGATGCACGTGGTCACGGTCATGTTTCTAGAGAGATGGAGGCATTGAGAAATAGGATTGCTTCAAGTTTGATGGGTGCACGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

662

Amino Acids

75.31

Weight (kDa)

8.38

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 28 - 122 2.3e-25 Myb/SANT-like DNA-binding domain
DUF8040 PF26138 310 - 404 1.8e-36 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 436 - 604 4.5e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 443 - 605 5.9e-23 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1053, 1659
Acc36I ACCTGC 1 cut(s) 1448
AccB1I GGYRCC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 1382
AccII CGCG 1 cut(s) 695
AccIII TCCGGA 1 cut(s) 999
AciI CCGC 2 cut(s) 506, 693
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 1241
AcsI RAATTY 2 cut(s) 925, 1628
AcuI CTGAAG 1 cut(s) 816
AcvI CACGTG 1 cut(s) 1907
AfaI GTAC 6 cut(s) 157, 748, 1109, 1143, 1374, 1836
AfiI CCNNNNNNNGG 2 cut(s) 1382, 1541
AflIII ACRYGT 1 cut(s) 993
AgeI ACCGGT 1 cut(s) 467
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 2 cut(s) 83, 151
AjuI GAANNNNNNNTTGG 8 cut(s) 294, 326, 1488, 1520, 1574, 1606, 1698, 1730
AleI CACNNNNGTG 1 cut(s) 1164
AluBI AGCT 9 cut(s) 80, 104, 186, 464, 524, 602, 1064, 1325, 1517
AluI AGCT 9 cut(s) 80, 104, 186, 464, 524, 602, 1064, 1325, 1517
Alw21I GWGCWC 2 cut(s) 1645, 1978
Alw26I GTCTC 4 cut(s) 203, 611, 1163, 1305
Alw44I GTGCAC 1 cut(s) 1974
AlwI GGATC 1 cut(s) 1241
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 1250
Aor13HI TCCGGA 1 cut(s) 999
AoxI GGCC 2 cut(s) 149, 307
ApaLI GTGCAC 1 cut(s) 1974
ApoI RAATTY 2 cut(s) 925, 1628
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AseI ATTAAT 1 cut(s) 714
AsiGI ACCGGT 1 cut(s) 467
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 913, 1595
AsuC2I CCSGG 1 cut(s) 1069
AsuHPI GGTGA 7 cut(s) 35, 964, 1069, 1136, 1178, 1295, 1350
AsuNHI GCTAGC 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 1250
AvaII GGWCC 2 cut(s) 913, 1595
AxyI CCTNAGG 1 cut(s) 1691
BaeGI GKGCMC 1 cut(s) 1978
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BanI GGYRCC 1 cut(s) 689
BanII GRGCYC 1 cut(s) 487
BbrPI CACGTG 1 cut(s) 1907
Bbv12I GWGCWC 2 cut(s) 1645, 1978
BccI CCATC 8 cut(s) 171, 949, 1325, 1369, 1728, 1880, 1927, 1963
BceAI ACGGC 1 cut(s) 1817
BciT130I CCWGG 2 cut(s) 85, 153
BciVI GTATCC 1 cut(s) 1562
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 1069
BcoDI GTCTC 4 cut(s) 203, 611, 1163, 1305
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 5 cut(s) 183, 741, 786, 1290, 1926
BfmI CTRYAG 2 cut(s) 459, 1326
BfoI RGCGCY 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 1448
BfuI GTATCC 1 cut(s) 1562
BglII AGATCT 1 cut(s) 286
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 3 cut(s) 85, 153, 1069
Bme18I GGWCC 2 cut(s) 913, 1595
BmeT110I CYCGRG 1 cut(s) 1250
BmgT120I GGNCC 2 cut(s) 913, 1595
BmiI GGNNCC 4 cut(s) 486, 691, 915, 1596
BmrFI CCNGG 3 cut(s) 85, 153, 1069
BmsI GCATC 6 cut(s) 331, 353, 420, 1471, 1552, 1891
BmtI GCTAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 1069
BsaAI YACGTR 2 cut(s) 1838, 1907
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 2 cut(s) 467, 999
BsaXI ACNNNNNCTCC 4 cut(s) 419, 449, 1063, 1093
Bsc4I CCNNNNNNNGG 2 cut(s) 1382, 1541
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 3 cut(s) 217, 310, 943
Bse21I CCTNAGG 1 cut(s) 1691
Bse3DI GCAATG 1 cut(s) 1104
Bse8I GATNNNNATC 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 999
BseBI CCWGG 2 cut(s) 85, 153
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 6 cut(s) 182, 556, 1008, 1567, 1891, 1903
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 2 cut(s) 1382, 1541
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 3 cut(s) 1077, 1418, 1705
BseNI ACTGG 3 cut(s) 217, 310, 943
BseRI GAGGAG 5 cut(s) 584, 845, 848, 857, 1134
BseSI GKGCMC 1 cut(s) 1978
BsgI GTGCAG 1 cut(s) 1476
Bsh1236I CGCG 1 cut(s) 695
BshFI GGCC 2 cut(s) 151, 309
BshNI GGYRCC 1 cut(s) 689
BshTI ACCGGT 1 cut(s) 467
BsiHKAI GWGCWC 2 cut(s) 1645, 1978
BsiHKCI CYCGRG 1 cut(s) 1250
BsiSI CCGG 3 cut(s) 468, 1000, 1069
BsiWI CGTACG 1 cut(s) 1834
BslFI GGGAC 4 cut(s) 688, 899, 1608, 1763
BslI CCNNNNNNNGG 2 cut(s) 1382, 1541
BsmAI GTCTC 4 cut(s) 203, 611, 1163, 1305
BsmFI GGGAC 4 cut(s) 688, 899, 1608, 1763
BsnI GGCC 2 cut(s) 151, 309
BsoBI CYCGRG 1 cut(s) 1250
Bsp1286I GDGCHC 3 cut(s) 487, 1645, 1978
Bsp13I TCCGGA 1 cut(s) 999
Bsp1407I TGTACA 2 cut(s) 1107, 1141
Bsp143I GATC 5 cut(s) 42, 286, 496, 1246, 1366
BspACI CCGC 2 cut(s) 506, 693
BspANI GGCC 2 cut(s) 151, 309
BspCNI CTCAG 3 cut(s) 1078, 1417, 1704
BspEI TCCGGA 1 cut(s) 999
BspFNI CGCG 1 cut(s) 695
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 4 cut(s) 486, 691, 915, 1596
BspMI ACCTGC 1 cut(s) 1448
BspOI GCTAGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 1241
BspT107I GGYRCC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 1104
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 2 cut(s) 1107, 1141
BsrI ACTGG 3 cut(s) 217, 310, 943
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 5 cut(s) 42, 286, 496, 1246, 1366
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 85, 153
Bst4CI ACNGT 5 cut(s) 100, 337, 597, 1174, 1916
Bst6I CTCTTC 3 cut(s) 834, 1690, 1875
BstAUI TGTACA 2 cut(s) 1107, 1141
BstBAI YACGTR 2 cut(s) 1838, 1907
BstC8I GCNNGC 3 cut(s) 184, 633, 1337
BstDEI CTNAG 4 cut(s) 134, 1086, 1404, 1691
BstF5I GGATG 6 cut(s) 182, 556, 1008, 1567, 1891, 1903
BstFNI CGCG 1 cut(s) 695
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 5 cut(s) 45, 289, 499, 1249, 1369
BstMAI GTCTC 4 cut(s) 203, 611, 1163, 1305
BstMBI GATC 5 cut(s) 42, 286, 496, 1246, 1366
BstMWI GCNNNNNNNGC 1 cut(s) 1481
BstNI CCWGG 2 cut(s) 85, 153
BstNSI RCATGY 5 cut(s) 997, 1343, 1438, 1455, 1756
BstSCI CCNGG 3 cut(s) 83, 151, 1067
BstSFI CTRYAG 2 cut(s) 459, 1326
BstSLI GKGCMC 1 cut(s) 1978
BstUI CGCG 1 cut(s) 695
BstX2I RGATCY 2 cut(s) 286, 1246
BstYI RGATCY 2 cut(s) 286, 1246
Bsu36I CCTNAGG 1 cut(s) 1691
BsuI GTATCC 1 cut(s) 1562
BsuRI GGCC 2 cut(s) 151, 309
BtsCI GGATG 6 cut(s) 182, 556, 1008, 1567, 1891, 1903
BtsI GCAGTG 1 cut(s) 1470
BtsIMutI CAGTG 2 cut(s) 936, 1470
BveI ACCTGC 1 cut(s) 1448
Cac8I GCNNGC 3 cut(s) 184, 633, 1337
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 913, 1595
Csp6I GTAC 6 cut(s) 156, 747, 1108, 1142, 1373, 1835
CspAI ACCGGT 1 cut(s) 467
CviQI GTAC 6 cut(s) 156, 747, 1108, 1142, 1373, 1835
DdeI CTNAG 4 cut(s) 134, 1086, 1404, 1691
DpnI GATC 5 cut(s) 44, 288, 498, 1248, 1368
DpnII GATC 5 cut(s) 42, 286, 496, 1246, 1366
DraI TTTAAA 2 cut(s) 1024, 1726
Eam1104I CTCTTC 3 cut(s) 834, 1690, 1875
EarI CTCTTC 3 cut(s) 834, 1690, 1875
Eco130I CCWWGG 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 913, 1595
Eco57I CTGAAG 1 cut(s) 816
Eco72I CACGTG 1 cut(s) 1907
Eco81I CCTNAGG 1 cut(s) 1691
Eco88I CYCGRG 1 cut(s) 1250
EcoO109I RGGNCCY 1 cut(s) 913
EcoRI GAATTC 1 cut(s) 925
EcoRII CCWGG 2 cut(s) 83, 151
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 310
FaqI GGGAC 4 cut(s) 688, 899, 1608, 1763
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 6 cut(s) 189, 563, 1015, 1574, 1898, 1910
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 693
FspBI CTAG 5 cut(s) 183, 741, 786, 1290, 1926
GlaI GCGC 1 cut(s) 457
GluI GCNGC 1 cut(s) 693
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 2 cut(s) 151, 309
HapII CCGG 3 cut(s) 468, 1000, 1069
HhaI GCGC 1 cut(s) 458
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 4 cut(s) 88, 319, 1286, 1402
HpaII CCGG 3 cut(s) 468, 1000, 1069
HphI GGTGA 7 cut(s) 35, 964, 1069, 1136, 1178, 1295, 1350
Hpy166II GTNNAC 6 cut(s) 593, 644, 776, 1110, 1142, 1976
Hpy188I TCNGA 6 cut(s) 291, 349, 496, 796, 1366, 1407
Hpy188III TCNNGA 9 cut(s) 373, 419, 560, 893, 1000, 1250, 1290, 1625, 1926
Hpy8I GTNNAC 6 cut(s) 593, 644, 776, 1110, 1142, 1976
HpyAV CCTTC 8 cut(s) 167, 292, 498, 650, 799, 1084, 1460, 1818
HpyCH4III ACNGT 5 cut(s) 100, 337, 597, 1174, 1916
HpyCH4IV ACGT 3 cut(s) 537, 1837, 1906
HpyF10VI GCNNNNNNNGC 1 cut(s) 1481
HpyF3I CTNAG 4 cut(s) 134, 1086, 1404, 1691
HpySE526I ACGT 3 cut(s) 537, 1837, 1906
HspAI GCGC 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 999
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 5 cut(s) 42, 286, 496, 1246, 1366
LmnI GCTCC 3 cut(s) 490, 529, 1322
LweI GCATC 6 cut(s) 331, 353, 420, 1471, 1552, 1891
MaeI CTAG 5 cut(s) 183, 741, 786, 1290, 1926
MaeII ACGT 3 cut(s) 537, 1837, 1906
MaeIII GTNAC 5 cut(s) 23, 607, 941, 1760, 1910
MalI GATC 5 cut(s) 44, 288, 498, 1248, 1368
MboI GATC 5 cut(s) 42, 286, 496, 1246, 1366
MboII GAAGA 9 cut(s) 18, 25, 253, 483, 851, 1054, 1613, 1677, 1892
MfeI CAATTG 2 cut(s) 28, 236
MflI RGATCY 2 cut(s) 286, 1246
MhlI GDGCHC 3 cut(s) 487, 1645, 1978
MlyI GAGTC 1 cut(s) 1396
MmeI TCCRAC 3 cut(s) 296, 417, 528
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 999
MseI TTAA 8 cut(s) 165, 450, 714, 1023, 1308, 1671, 1725, 1782
MslI CAYNNNNRTG 7 cut(s) 38, 950, 1164, 1344, 1450, 1603, 1917
MspI CCGG 3 cut(s) 468, 1000, 1069
MspR9I CCNGG 3 cut(s) 85, 153, 1069
MunI CAATTG 2 cut(s) 28, 236
MvaI CCWGG 2 cut(s) 85, 153
MvnI CGCG 1 cut(s) 695
MwoI GCNNNNNNNGC 1 cut(s) 1481
NciI CCSGG 1 cut(s) 1069
NdeII GATC 5 cut(s) 42, 286, 496, 1246, 1366
NheI GCTAGC 1 cut(s) 182
NlaIV GGNNCC 4 cut(s) 486, 691, 915, 1596
NmuCI GTSAC 2 cut(s) 23, 1910
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 5 cut(s) 997, 1343, 1438, 1455, 1756
OliI CACNNNNGTG 1 cut(s) 1164
PagI TCATGA 1 cut(s) 892
PceI AGGCCT 1 cut(s) 151
PciI ACATGT 1 cut(s) 993
PfeI GAWTC 3 cut(s) 88, 319, 1286
Pfl23II CGTACG 1 cut(s) 1834
PflMI CCANNNNNTGG 1 cut(s) 1382
PfoI TCCNGGA 1 cut(s) 1067
PinAI ACCGGT 1 cut(s) 467
PkrI GCNGC 1 cut(s) 694
PleI GAGTC 1 cut(s) 1396
PmaCI CACGTG 1 cut(s) 1907
PmlI CACGTG 1 cut(s) 1907
PpsI GAGTC 1 cut(s) 1396
Ppu21I YACGTR 2 cut(s) 1838, 1907
PpuMI RGGWCCY 1 cut(s) 913
PscI ACATGT 1 cut(s) 993
PshBI ATTAAT 1 cut(s) 714
PsiI TTATAA 2 cut(s) 1053, 1659
Psp1406I AACGTT 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 913
Psp6I CCWGG 2 cut(s) 83, 151
PspCI CACGTG 1 cut(s) 1907
PspGI CCWGG 2 cut(s) 83, 151
PspLI CGTACG 1 cut(s) 1834
PspN4I GGNNCC 4 cut(s) 486, 691, 915, 1596
PspPI GGNCC 2 cut(s) 913, 1595
PspPPI RGGWCCY 1 cut(s) 913
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 2 cut(s) 286, 1246
RsaI GTAC 6 cut(s) 157, 748, 1109, 1143, 1374, 1836
RsaNI GTAC 6 cut(s) 156, 747, 1108, 1142, 1373, 1835
RseI CAYNNNNRTG 7 cut(s) 38, 950, 1164, 1344, 1450, 1603, 1917
SaqAI TTAA 8 cut(s) 165, 450, 714, 1023, 1308, 1671, 1725, 1782
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 5 cut(s) 42, 286, 496, 1246, 1366
Sau96I GGNCC 2 cut(s) 913, 1595
SchI GAGTC 1 cut(s) 1396
ScrFI CCNGG 3 cut(s) 85, 153, 1069
SduI GDGCHC 3 cut(s) 487, 1645, 1978
SfaNI GCATC 6 cut(s) 331, 353, 420, 1471, 1552, 1891
SfcI CTRYAG 2 cut(s) 459, 1326
SinI GGWCC 2 cut(s) 913, 1595
SmiMI CAYNNNNRTG 7 cut(s) 38, 950, 1164, 1344, 1450, 1603, 1917
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SpeI ACTAGT 1 cut(s) 785
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 2 cut(s) 506, 693
SspI AATATT 2 cut(s) 1491, 1741
SspMI CTAG 5 cut(s) 183, 741, 786, 1290, 1926
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 83, 151, 1067
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 5 cut(s) 100, 337, 597, 1174, 1916
TaiI ACGT 3 cut(s) 540, 1840, 1909
TaqI TCGA 1 cut(s) 406
TatI WGTACW 2 cut(s) 1107, 1141
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 3 cut(s) 88, 319, 1286
Tru1I TTAA 8 cut(s) 165, 450, 714, 1023, 1308, 1671, 1725, 1782
Tru9I TTAA 8 cut(s) 165, 450, 714, 1023, 1308, 1671, 1725, 1782
TscAI CASTG 2 cut(s) 943, 1477
TseFI GTSAC 2 cut(s) 23, 1910
Tsp45I GTSAC 2 cut(s) 23, 1910
TspRI CASTG 2 cut(s) 943, 1477
Van91I CCANNNNNTGG 1 cut(s) 1382
VneI GTGCAC 1 cut(s) 1974
VpaK11BI GGWCC 2 cut(s) 913, 1595
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 2 cut(s) 925, 1628
XbaI TCTAGA 2 cut(s) 1289, 1925
XceI RCATGY 5 cut(s) 997, 1343, 1438, 1455, 1756
XspI CTAG 5 cut(s) 183, 741, 786, 1290, 1926
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.