Rw7G031510
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000469
Physical Location & Seq
Reverse (-)
45182607 .. 45183476
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031510.1

Sequence Viewer

Length: 756 bp
ATGGATGCTTCTGGAGATGAGGAGGAGATAGATCAAATTATATGTCTATGTGCTCGTCTTATTCAAGTCTATCTCGAAAAGTACATTCACAAAACTCCATGTATGACAAGCTCCCAAACAGGTTACATTTGGTTAATGGAAGTGTTAGAAGGCAATGAAAGTAGGTGTTATAATCAATTTAGGATGGATAAGCAAGTCTTCTTGATGCTTGTAAATGATTTGGAAAAGATAATTAAGGATTCAAGAAACATGAGTATTGTTGAAATGTTGGCTATGTTTCTCTATATTTTGGGACAAGGTCAGACAAATAGGAGTACACAAGAACGTTTTCAACGTTCTGGTGAGACGGTTAGTAGGTATTTTGATATAATGTTAGAGATTTTCTATAATATGGCAAAAGTGCTCATAAAGCCATTGGATCCGGAATTTAGGAGCATCCCACAAGAAATTCTAACTGATTCAAGATACATGCCTCATTTTAAGGATTGCATTGGCGCTATCGATGGTGTTCATGTCCAAGCTTCGATATCTCCATGTGATCAAGTGCCATACATTGGAAGAAAAGGGATACCCACCCAAAATGTATTGGCTATTTGCAACTTCAACATGCAATTCACATTTGTATGTGCAGGGTGGGAAGGCAGCGCCCATGATAGTAGAGTATTCTTATCAGCTCTACGCAAACCTCGATCGAATTTTCCTAAACCCCCCAATGGTATTTTATTTTTCCGGAATTACACAAATAATAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

251

Amino Acids

29.02

Weight (kDa)

6.11

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 36 - 128 6.7e-35 Domain of unknown function (DUF8040)
DDE_Tnp_4 PF13359 167 - 222 1.9e-06 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 171, 754
AccB7I CCANNNNNTGG 1 cut(s) 554
AccIII TCCGGA 2 cut(s) 421, 729
AclI AACGTT 2 cut(s) 325, 334
AclWI GGATC 2 cut(s) 413, 426
AcsI RAATTY 3 cut(s) 425, 447, 694
AfaI GTAC 2 cut(s) 83, 316
AfiI CCNNNNNNNGG 2 cut(s) 554, 713
AgsI TTSAA 6 cut(s) 65, 243, 263, 332, 462, 604
AluBI AGCT 3 cut(s) 111, 521, 674
AluI AGCT 3 cut(s) 111, 521, 674
Alw21I GWGCWC 2 cut(s) 55, 405
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 413, 426
Aor13HI TCCGGA 2 cut(s) 421, 729
ApeKI GCWGC 1 cut(s) 642
ApoI RAATTY 3 cut(s) 425, 447, 694
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 2 cut(s) 497, 647
AsuHPI GGTGA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 2 cut(s) 55, 405
BbvI GCAGC 1 cut(s) 654
BccI CCATC 2 cut(s) 178, 497
BciVI GTATCC 1 cut(s) 561
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 338
BfoI RGCGCY 2 cut(s) 498, 648
BfuI GTATCC 1 cut(s) 561
BisI GCNGC 1 cut(s) 643
BlsI GCNGC 1 cut(s) 644
BmiI GGNNCC 1 cut(s) 420
BmsI GCATC 2 cut(s) 195, 444
BpiI GAAGAC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 501
BsaWI WCCGGW 2 cut(s) 421, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 713
Bse3DI GCAATG 1 cut(s) 160
BseAI TCCGGA 2 cut(s) 421, 729
BseCI ATCGAT 1 cut(s) 501
BseGI GGATG 3 cut(s) 10, 189, 435
BseLI CCNNNNNNNGG 2 cut(s) 554, 713
BseMI GCAATG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 35, 38
BseXI GCAGC 1 cut(s) 654
BsgI GTGCAG 1 cut(s) 648
Bsh1285I CGRYCG 1 cut(s) 692
BshVI ATCGAT 1 cut(s) 501
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 2 cut(s) 55, 405
BsiSI CCGG 2 cut(s) 422, 730
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 554, 713
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 55, 405
Bsp13I TCCGGA 2 cut(s) 421, 729
Bsp143I GATC 4 cut(s) 31, 418, 538, 689
BspDI ATCGAT 1 cut(s) 501
BspEI TCCGGA 2 cut(s) 421, 729
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 2 cut(s) 413, 426
BsrDI GCAATG 1 cut(s) 160
BssMI GATC 4 cut(s) 31, 418, 538, 689
Bst4CI ACNGT 1 cut(s) 349
BstF5I GGATG 3 cut(s) 10, 189, 435
BstH2I RGCGCY 2 cut(s) 498, 648
BstHHI GCGC 2 cut(s) 497, 647
BstKTI GATC 4 cut(s) 34, 421, 541, 692
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 4 cut(s) 31, 418, 538, 689
BstMCI CGRYCG 1 cut(s) 692
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstNSI RCATGY 2 cut(s) 472, 610
BstV1I GCAGC 1 cut(s) 654
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 501
BsuI GTATCC 1 cut(s) 561
BsuTUI ATCGAT 1 cut(s) 501
BtsCI GGATG 3 cut(s) 10, 189, 435
CfoI GCGC 2 cut(s) 497, 647
ClaI ATCGAT 1 cut(s) 501
Csp6I GTAC 2 cut(s) 82, 315
CviAII CATG 7 cut(s) 99, 250, 469, 512, 534, 607, 650
CviJI RGCY 6 cut(s) 111, 272, 412, 521, 590, 674
CviKI_1 RGCY 6 cut(s) 111, 272, 412, 521, 590, 674
CviQI GTAC 2 cut(s) 82, 315
DpnI GATC 4 cut(s) 33, 420, 540, 691
DpnII GATC 4 cut(s) 31, 418, 538, 689
Eco32I GATATC 1 cut(s) 528
EcoRV GATATC 1 cut(s) 528
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 7 cut(s) 102, 253, 472, 515, 537, 610, 653
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 306
FatI CATG 7 cut(s) 98, 249, 468, 511, 533, 606, 649
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 643
FokI GGATG 3 cut(s) 17, 196, 422
Fsp4HI GCNGC 1 cut(s) 643
GlaI GCGC 2 cut(s) 496, 646
GluI GCNGC 1 cut(s) 643
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 2 cut(s) 498, 648
HapII CCGG 2 cut(s) 422, 730
HhaI GCGC 2 cut(s) 497, 647
Hin1II CATG 7 cut(s) 102, 253, 472, 515, 537, 610, 653
Hin6I GCGC 2 cut(s) 495, 645
HinP1I GCGC 2 cut(s) 495, 645
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 2 cut(s) 239, 458
HpaII CCGG 2 cut(s) 422, 730
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 7 cut(s) 12, 74, 202, 243, 422, 462, 730
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 143, 632
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 325, 334
HpyCH4V TGCA 4 cut(s) 489, 597, 610, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpySE526I ACGT 2 cut(s) 325, 334
Hsp92II CATG 7 cut(s) 102, 253, 472, 515, 537, 610, 653
HspAI GCGC 2 cut(s) 495, 645
Kpn2I TCCGGA 2 cut(s) 421, 729
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 4 cut(s) 31, 418, 538, 689
LmnI GCTCC 2 cut(s) 116, 432
LpnPI CCDG 5 cut(s) 105, 324, 435, 615, 743
Lsp1109I GCAGC 1 cut(s) 654
LweI GCATC 2 cut(s) 195, 444
MaeII ACGT 2 cut(s) 325, 334
MaeIII GTNAC 1 cut(s) 122
MalI GATC 4 cut(s) 33, 420, 540, 691
MboI GATC 4 cut(s) 31, 418, 538, 689
MboII GAAGA 2 cut(s) 190, 570
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 2 cut(s) 55, 405
MluCI AATT 8 cut(s) 36, 176, 231, 425, 447, 611, 694, 733
MnlI CCTC 4 cut(s) 13, 16, 483, 696
MroI TCCGGA 2 cut(s) 421, 729
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 3 cut(s) 134, 234, 480
MslI CAYNNNNRTG 1 cut(s) 622
MspI CCGG 2 cut(s) 422, 730
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeII GATC 4 cut(s) 31, 418, 538, 689
NlaIII CATG 7 cut(s) 102, 253, 472, 515, 537, 610, 653
NlaIV GGNNCC 1 cut(s) 420
NspI RCATGY 2 cut(s) 472, 610
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 685
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 239, 458
PflFI GACNNNGTC 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 1 cut(s) 644
Ple19I CGATCG 1 cut(s) 692
PsiI TTATAA 2 cut(s) 171, 754
Psp1406I AACGTT 2 cut(s) 325, 334
PspN4I GGNNCC 1 cut(s) 420
PsuI RGATCY 1 cut(s) 418
PsyI GACNNNGTC 1 cut(s) 297
PvuI CGATCG 1 cut(s) 692
RsaI GTAC 2 cut(s) 83, 316
RsaNI GTAC 2 cut(s) 82, 315
RseI CAYNNNNRTG 1 cut(s) 622
SaqAI TTAA 3 cut(s) 134, 234, 480
SatI GCNGC 1 cut(s) 643
Sau3AI GATC 4 cut(s) 31, 418, 538, 689
SduI GDGCHC 2 cut(s) 55, 405
SfaNI GCATC 2 cut(s) 195, 444
SmiMI CAYNNNNRTG 1 cut(s) 622
Sse9I AATT 8 cut(s) 36, 176, 231, 425, 447, 611, 694, 733
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 328, 337
TaqI TCGA 5 cut(s) 75, 501, 524, 688, 692
TasI AATT 8 cut(s) 36, 176, 231, 425, 447, 611, 694, 733
TatI WGTACW 2 cut(s) 81, 314
TfiI GAWTC 2 cut(s) 239, 458
Tru1I TTAA 3 cut(s) 134, 234, 480
Tru9I TTAA 3 cut(s) 134, 234, 480
TseI GCWGC 1 cut(s) 642
TspDTI ATGAA 2 cut(s) 171, 500
Tth111I GACNNNGTC 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 554
XapI RAATTY 3 cut(s) 425, 447, 694
XceI RCATGY 2 cut(s) 472, 610
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.