Rmu_sc0000552.1_g000020
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000552.1
OG0000469
Physical Location & Seq
Forward (+)
53272 .. 55151
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000552.1_g000020.1.cds

Sequence Viewer

Length: 687 bp
atggaggtgcctggagatgaggaggagatagaccaacttatatgtgtaactggtcgtcttattcaactctatcatgaaaagtacattcagaaaactccatgtatgacaagctcccaaacaggttatatttggttaatggaagtgttagaggggaatgaaagtaggtgttataaccagtttaggatggataaaaactgcttcttaatgctattgaatgatgttgagaagatgttgaagggttcaaaaaacataagtaccgttgaaatgttagctatgtctctatatattttgggacaaggtcaaaccaataggaatacacaagagcgttttcaacgttctggtgagacggttagtagatattttgataaaatgctcaagattttctataatatggcgaaagtgctcataaagccagaagatcccgaatttacaagcatcccaaatgaaattctaaatgactcaagatacatgcctcattttaagagaaaaggggtggatccttatgtagatatgaatggattgcatgacttcatcaagaaatcactaaatgtgaatgttactaagaaacaattgcaagataagattcgaaagatgaggaagaagtttgagaagaatgtgaagaaggagaagtacaatctaactaaggctcataacttgacggctttcgagttgttgaagaaggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

228

Amino Acids

26.93

Weight (kDa)

9.24

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 7
AclI AACGTT 1 cut(s) 334
AclWI GGATC 3 cut(s) 413, 491, 504
AcsI RAATTY 2 cut(s) 425, 447
AfaI GTAC 3 cut(s) 83, 256, 632
AgsI TTSAA 7 cut(s) 65, 214, 235, 243, 263, 332, 676
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 2 cut(s) 111, 272
AluI AGCT 2 cut(s) 111, 272
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 282, 338
AlwI GGATC 3 cut(s) 413, 491, 504
ApoI RAATTY 2 cut(s) 425, 447
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 586
BaeI ACNNNNGTAYC 2 cut(s) 238, 271
BamHI GGATCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 7
BarI GAAGNNNNNNTAC 2 cut(s) 614, 646
Bbv12I GWGCWC 1 cut(s) 405
BccI CCATC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 282, 338
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 9, 498
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 586
BpuEI CTTGAG 2 cut(s) 359, 445
Bse1I ACTGG 2 cut(s) 55, 175
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 189, 435
BseNI ACTGG 2 cut(s) 55, 175
BseRI GAGGAG 2 cut(s) 35, 38
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 405
BslFI GGGAC 1 cut(s) 306
BsmAI GTCTC 2 cut(s) 282, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 2 cut(s) 418, 496
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 9, 498
BspPI GGATC 3 cut(s) 413, 491, 504
BspT104I TTCGAA 1 cut(s) 586
BspT107I GGYRCC 1 cut(s) 7
BsrI ACTGG 2 cut(s) 55, 175
BssMI GATC 2 cut(s) 418, 496
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 259, 349
BstBI TTCGAA 1 cut(s) 586
BstDEI CTNAG 2 cut(s) 561, 642
BstF5I GGATG 2 cut(s) 189, 435
BstKTI GATC 2 cut(s) 421, 499
BstMAI GTCTC 2 cut(s) 282, 338
BstMBI GATC 2 cut(s) 418, 496
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 10
BstX2I RGATCY 2 cut(s) 418, 496
BstYI RGATCY 2 cut(s) 418, 496
BtsCI GGATG 2 cut(s) 189, 435
CciI TCATGA 1 cut(s) 73
Csp6I GTAC 3 cut(s) 82, 255, 631
CviAII CATG 4 cut(s) 74, 99, 469, 524
CviJI RGCY 5 cut(s) 111, 272, 412, 647, 662
CviKI_1 RGCY 5 cut(s) 111, 272, 412, 647, 662
CviQI GTAC 3 cut(s) 82, 255, 631
DdeI CTNAG 2 cut(s) 561, 642
DpnI GATC 2 cut(s) 420, 498
DpnII GATC 2 cut(s) 418, 496
EcoRII CCWGG 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 4 cut(s) 77, 102, 472, 527
FaqI GGGAC 1 cut(s) 306
FatI CATG 4 cut(s) 73, 98, 468, 523
FokI GGATG 2 cut(s) 196, 422
GsuI CTGGAG 1 cut(s) 33
Hin1II CATG 4 cut(s) 77, 102, 472, 527
HinfI GANTC 2 cut(s) 458, 583
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 5 cut(s) 74, 376, 422, 462, 535
HpyAV CCTTC 3 cut(s) 229, 616, 673
HpyCH4III ACNGT 2 cut(s) 259, 349
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 523, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 2 cut(s) 561, 642
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 4 cut(s) 77, 102, 472, 527
Kzo9I GATC 2 cut(s) 418, 496
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 6 cut(s) 24, 36, 105, 188, 324, 426
LweI GCATC 1 cut(s) 444
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 2 cut(s) 46, 556
MalI GATC 2 cut(s) 420, 498
MboI GATC 2 cut(s) 418, 496
MboII GAAGA 5 cut(s) 238, 428, 610, 622, 631
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 2 cut(s) 418, 496
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 3 cut(s) 425, 447, 569
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 5 cut(s) 13, 16, 142, 483, 588
MseI TTAA 3 cut(s) 134, 203, 480
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeII GATC 2 cut(s) 418, 496
NlaIII CATG 4 cut(s) 77, 102, 472, 527
NlaIV GGNNCC 2 cut(s) 9, 498
NspI RCATGY 1 cut(s) 472
NspV TTCGAA 1 cut(s) 586
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 1 cut(s) 583
PflFI GACNNNGTC 1 cut(s) 297
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PsiI TTATAA 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 9, 498
PsuI RGATCY 2 cut(s) 418, 496
PsyI GACNNNGTC 1 cut(s) 297
RsaI GTAC 3 cut(s) 83, 256, 632
RsaNI GTAC 3 cut(s) 82, 255, 631
SaqAI TTAA 3 cut(s) 134, 203, 480
Sau3AI GATC 2 cut(s) 418, 496
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 405
SetI ASST 8 cut(s) 9, 113, 124, 167, 274, 301, 337, 684
SfaNI GCATC 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 586
SmlI CTYRAG 2 cut(s) 374, 460
SmoI CTYRAG 2 cut(s) 374, 460
Sse9I AATT 3 cut(s) 425, 447, 569
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 259, 349
TaiI ACGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 586, 666
TasI AATT 3 cut(s) 425, 447, 569
TatI WGTACW 2 cut(s) 81, 630
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 3 cut(s) 134, 203, 480
Tru9I TTAA 3 cut(s) 134, 203, 480
TspDTI ATGAA 5 cut(s) 90, 171, 459, 520, 527
Tth111I GACNNNGTC 1 cut(s) 297
XapI RAATTY 2 cut(s) 425, 447
XceI RCATGY 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.