pycom11g10040
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000469
Physical Location & Seq
Forward (+)
8402814 .. 8403366
553 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10040.2

Sequence Viewer

Length: 285 bp
ATGAAAGCAGAACGTTGGTTTAAGGGAACATATAAAGGTGAAAGATATCATTTCCCGGATTTTTGTAGGGATGCCGAACCAACGGGTCATAAAGAGGTATTCAACCACATGCATTATTCTCTTCGGAGCATCATTGAACGAACTTTTAGGGTATGGAAGAAAAGATGGGCAGTTTTAAGGGATATGGCTAATTACCCATTCAATAAGCAAGTGAAGATTGTCATTGATACAATGGCTCTTCATAACTACATACGGAGGTATTCTGAACGTGATCGATCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

95

Amino Acids

11.71

Weight (kDa)

10.0

Isoelectric Point (pI)

68.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 13
AgsI TTSAA 3 cut(s) 103, 137, 202
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 50
BccI CCATC 1 cut(s) 159
BcnI CCSGG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 61, 138
BpuMI CCSGG 1 cut(s) 56
Bsa29I ATCGAT 1 cut(s) 274
BseCI ATCGAT 1 cut(s) 274
BseGI GGATG 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 274
BsiSI CCGG 1 cut(s) 56
Bsp143I GATC 2 cut(s) 271, 275
BspDI ATCGAT 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 243
BssMI GATC 2 cut(s) 271, 275
Bst6I CTCTTC 2 cut(s) 126, 243
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 274, 278
BstMBI GATC 2 cut(s) 271, 275
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 274
BsuTUI ATCGAT 1 cut(s) 274
BtsCI GGATG 1 cut(s) 76
ClaI ATCGAT 1 cut(s) 274
CviAII CATG 1 cut(s) 109
CviJI RGCY 2 cut(s) 188, 236
CviKI_1 RGCY 2 cut(s) 188, 236
DpnI GATC 2 cut(s) 273, 277
DpnII GATC 2 cut(s) 271, 275
Eam1104I CTCTTC 2 cut(s) 126, 243
EarI CTCTTC 2 cut(s) 126, 243
Eco32I GATATC 1 cut(s) 47
EcoRV GATATC 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 114
FaeI CATG 1 cut(s) 112
FaiI YATR 8 cut(s) 31, 33, 90, 110, 154, 185, 243, 251
FatI CATG 1 cut(s) 108
FokI GGATG 1 cut(s) 83
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 112
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 126, 265
HpyCH4IV ACGT 2 cut(s) 13, 268
HpyCH4V TGCA 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 13, 268
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 2 cut(s) 271, 275
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 1 cut(s) 69
LweI GCATC 2 cut(s) 61, 138
MaeII ACGT 2 cut(s) 13, 268
MalI GATC 2 cut(s) 273, 277
MboI GATC 2 cut(s) 271, 275
MboII GAAGA 4 cut(s) 113, 169, 226, 230
MluCI AATT 1 cut(s) 190
MnlI CCTC 2 cut(s) 88, 249
Mph1103I ATGCAT 1 cut(s) 114
MseI TTAA 2 cut(s) 21, 176
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 56
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 271, 275
NlaIII CATG 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 114
NspI RCATGY 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 21, 176
Sau3AI GATC 2 cut(s) 271, 275
ScrFI CCNGG 1 cut(s) 56
SetI ASST 5 cut(s) 16, 40, 99, 260, 271
SfaNI GCATC 2 cut(s) 61, 138
SgeI CNNG 6 cut(s) 67, 68, 96, 121, 221, 281
Sse9I AATT 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 54
TaiI ACGT 2 cut(s) 16, 271
TaqI TCGA 1 cut(s) 274
TasI AATT 1 cut(s) 190
Tru1I TTAA 2 cut(s) 21, 176
Tru9I TTAA 2 cut(s) 21, 176
TspDTI ATGAA 2 cut(s) 17, 230
TspGWI ACGGA 1 cut(s) 268
XceI RCATGY 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.