Rroxscaffold_7G00186480
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000469
Physical Location & Seq
Reverse (-)
25852269 .. 25852856
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186480.1

Sequence Viewer

Length: 204 bp
ATGAATTTTCCTAAACCTCCACTAGGAAAATATTATGTTGTAGATTCCGGATACCCTCAAATGAATGGATTTTTGGGACCTTACAAAGGTCCGAGACAACATTTTCAACAATACCGTAGGCAAGAACCAAGAAATGAAAAAGAGGTATTTAACCAAGCACACTCTTCTCTTAGAAGCGTTATAGAACGCACATTTGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

67

Amino Acids

7.9

Weight (kDa)

9.89

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 47
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 2 cut(s) 23, 86
AgsI TTSAA 1 cut(s) 107
AjuI GAANNNNNNNTTGG 3 cut(s) 56, 88, 177
Alw26I GTCTC 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 47
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 77, 89
AvaII GGWCC 2 cut(s) 77, 89
BciVI GTATCC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 23
BfuI GTATCC 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 77, 89
BmgT120I GGNCC 2 cut(s) 77, 89
BmiI GGNNCC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 86
BseAI TCCGGA 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 23, 86
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 23, 86
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 90
Bsp13I TCCGGA 1 cut(s) 47
BspEI TCCGGA 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 170
BstENI CCTNNNNNAGG 2 cut(s) 21, 84
BstMAI GTCTC 1 cut(s) 88
BsuI GTATCC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 77, 89
DdeI CTNAG 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 77, 89
EcoNI CCTNNNNNAGG 2 cut(s) 21, 84
EcoO109I RGGNCCY 1 cut(s) 77
FaiI YATR 2 cut(s) 36, 182
FaqI GGGAC 1 cut(s) 90
FspBI CTAG 1 cut(s) 23
HapII CCGG 1 cut(s) 48
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 47
LpnPI CCDG 1 cut(s) 61
MaeI CTAG 1 cut(s) 23
MboII GAAGA 1 cut(s) 156
MluCI AATT 1 cut(s) 4
MnlI CCTC 3 cut(s) 27, 66, 136
MroI TCCGGA 1 cut(s) 47
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 48
NlaIV GGNNCC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 77, 89
PspPPI RGGWCCY 1 cut(s) 77
SaqAI TTAA 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 77, 89
SetI ASST 4 cut(s) 19, 82, 91, 147
SgeI CNNG 6 cut(s) 35, 60, 105, 134, 141, 167
SinI GGWCC 2 cut(s) 77, 89
Sse9I AATT 1 cut(s) 4
SspI AATATT 1 cut(s) 32
SspMI CTAG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 116
TasI AATT 1 cut(s) 4
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 17, 77, 150
VpaK11BI GGWCC 2 cut(s) 77, 89
XagI CCTNNNNNAGG 2 cut(s) 21, 84
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.