Rmu_sc0001257.1_g000003
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001257.1
OG0000469
Physical Location & Seq
Forward (+)
8254 .. 9845
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001257.1_g000003.1.cds

Sequence Viewer

Length: 762 bp
atgttcgtgcacatgttaggacatggtgttgggaataggttagcccaagaacgattccaacgttctggagagactgtgagtagatactttaggattgtcctagacagtgtatgtcgaatggctattgatgttataaagccgccggatcctgagttcaatgaaattcctgaggaaatatcaagagatacaagatatatgcctcattttaagaattgtataggggctattgatggtgtacatgtgtatgcctcaatacctcctcgagatcaaataccatatattggaaggaaaggcataccgactcaaaatataatggcggtgtgtaattttgacatgcaattcacttttgcatgtgccgggtgggaaggaactgcacatgatacaaggatatttctctcatctataaggaatgatgctctgaagtttcctaagcctcccaatgggaaatattatcttgtggatgctggttacccacaaatgaagggatatctaggaccttatagaggtggtgtgaggtatcatcttccacaatttcggtacggtggtgaacctaccggttctaaagaggggtaccaaatatcccactttgatgttccaattgtaaccggtggctacattgatttggacattctagtagagtttggtggtgggcataagaagtttgtcattacaagacttcacatggaagaggatacaaggaagattattgattcagtcgacggaagttactcagaggaaagaacccatatttccttgcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

253

Amino Acids

28.73

Weight (kDa)

6.79

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
Acc65I GGTACC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 570
AccB7I CCANNNNNTGG 1 cut(s) 281
AccI GTMKAC 1 cut(s) 717
AciI CCGC 2 cut(s) 140, 317
AclI AACGTT 1 cut(s) 61
AclWI GGATC 2 cut(s) 140, 153
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 440
AfaI GTAC 3 cut(s) 237, 539, 572
AfiI CCNNNNNNNGG 3 cut(s) 281, 440, 503
AflIII ACRYGT 2 cut(s) 12, 238
AgeI ACCGGT 2 cut(s) 554, 605
AgsI TTSAA 1 cut(s) 157
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 8
AlwI GGATC 2 cut(s) 140, 153
Ama87I CYCGRG 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 162
AsiGI ACCGGT 2 cut(s) 554, 605
Asp718I GGTACC 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 494
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 494
AxyI CCTNAGG 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 12
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BamHI GGATCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 12
BccI CCATC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 685
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 3 cut(s) 101, 491, 632
BfuI GTATCC 1 cut(s) 685
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 2 cut(s) 147, 572
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 403, 451
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 358
BsaWI WCCGGW 2 cut(s) 554, 605
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 440, 503
Bse118I RCCGGY 2 cut(s) 554, 605
Bse21I CCTNAGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 3 cut(s) 281, 440, 503
BseMII CTCAG 3 cut(s) 141, 159, 744
BseRI GAGGAG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 357
BshNI GGYRCC 1 cut(s) 570
BshTI ACCGGT 2 cut(s) 554, 605
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 4 cut(s) 143, 357, 555, 606
BslI CCNNNNNNNGG 3 cut(s) 281, 440, 503
BsmAI GTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 12
Bsp1407I TGTACA 1 cut(s) 235
Bsp143I GATC 2 cut(s) 145, 265
BspACI CCGC 2 cut(s) 140, 317
BspCNI CTCAG 3 cut(s) 142, 160, 743
BspLI GGNNCC 2 cut(s) 147, 572
BspPI GGATC 2 cut(s) 140, 153
BspT107I GGYRCC 1 cut(s) 570
BsrFI RCCGGY 2 cut(s) 554, 605
BsrGI TGTACA 1 cut(s) 235
BssAI RCCGGY 2 cut(s) 554, 605
BssMI GATC 2 cut(s) 145, 265
Bst4CI ACNGT 3 cut(s) 76, 107, 542
Bst6I CTCTTC 1 cut(s) 681
BstAUI TGTACA 1 cut(s) 235
BstDEI CTNAG 4 cut(s) 150, 168, 429, 730
BstEII GGTNACC 1 cut(s) 467
BstENI CCTNNNNNAGG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 2 cut(s) 148, 268
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 2 cut(s) 145, 265
BstNSI RCATGY 4 cut(s) 16, 242, 337, 354
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 356
BstSLI GKGCMC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 65
BstYI RGATCY 1 cut(s) 145
Bsu36I CCTNAGG 1 cut(s) 168
BsuI GTATCC 1 cut(s) 685
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 554, 605
Cfr13I GGNCC 1 cut(s) 494
Csp6I GTAC 3 cut(s) 236, 538, 571
CspAI ACCGGT 2 cut(s) 554, 605
CviAII CATG 7 cut(s) 13, 23, 239, 334, 351, 377, 682
CviJI RGCY 6 cut(s) 44, 122, 139, 224, 433, 612
CviKI_1 RGCY 6 cut(s) 44, 122, 139, 224, 433, 612
CviQI GTAC 3 cut(s) 236, 538, 571
DdeI CTNAG 4 cut(s) 150, 168, 429, 730
DpnI GATC 2 cut(s) 147, 267
DpnII GATC 2 cut(s) 145, 265
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 440
Eco81I CCTNAGG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 494
EcoO65I GGTNACC 1 cut(s) 467
EcoRV GATATC 1 cut(s) 488
FaeI CATG 7 cut(s) 16, 26, 242, 337, 354, 380, 685
FatI CATG 7 cut(s) 12, 22, 238, 333, 350, 376, 681
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 3 cut(s) 101, 491, 632
GluI GCNGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 4 cut(s) 143, 357, 555, 606
Hin1II CATG 7 cut(s) 16, 26, 242, 337, 354, 380, 685
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HinfI GANTC 3 cut(s) 54, 301, 710
HpaII CCGG 4 cut(s) 143, 357, 555, 606
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 4 cut(s) 10, 236, 548, 718
Hpy188I TCNGA 2 cut(s) 420, 733
Hpy188III TCNNGA 5 cut(s) 66, 149, 167, 180, 263
Hpy8I GTNNAC 4 cut(s) 10, 236, 548, 718
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 3 cut(s) 279, 359, 475
HpyCH4III ACNGT 3 cut(s) 76, 107, 542
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 5 cut(s) 10, 337, 350, 374, 757
HpyF3I CTNAG 4 cut(s) 150, 168, 429, 730
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 7 cut(s) 16, 26, 242, 337, 354, 380, 685
KpnI GGTACC 1 cut(s) 574
Kzo9I GATC 2 cut(s) 145, 265
LpnPI CCDG 8 cut(s) 51, 156, 162, 180, 370, 450, 568, 619
LweI GCATC 2 cut(s) 403, 451
MaeI CTAG 3 cut(s) 101, 491, 632
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 3 cut(s) 467, 601, 725
MalI GATC 2 cut(s) 147, 267
MboI GATC 2 cut(s) 145, 265
MboII GAAGA 3 cut(s) 515, 698, 712
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 6 cut(s) 162, 211, 325, 338, 530, 597
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 82
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 2 cut(s) 243, 588
MspI CCGG 4 cut(s) 143, 357, 555, 606
MspR9I CCNGG 1 cut(s) 358
MunI CAATTG 1 cut(s) 597
NciI CCSGG 1 cut(s) 358
NdeII GATC 2 cut(s) 145, 265
NlaIII CATG 7 cut(s) 16, 26, 242, 337, 354, 380, 685
NlaIV GGNNCC 2 cut(s) 147, 572
NspI RCATGY 4 cut(s) 16, 242, 337, 354
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 2 cut(s) 12, 238
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PfeI GAWTC 2 cut(s) 54, 710
PflMI CCANNNNNTGG 1 cut(s) 281
PinAI ACCGGT 2 cut(s) 554, 605
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PpuMI RGGWCCY 1 cut(s) 494
PscI ACATGT 2 cut(s) 12, 238
PsiI TTATAA 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 494
PspEI GGTNACC 1 cut(s) 467
PspN4I GGNNCC 2 cut(s) 147, 572
PspPI GGNCC 1 cut(s) 494
PspPPI RGGWCCY 1 cut(s) 494
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 237, 539, 572
RsaNI GTAC 3 cut(s) 236, 538, 571
RseI CAYNNNNRTG 2 cut(s) 243, 588
SalI GTCGAC 1 cut(s) 716
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 145, 265
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 12
SetI ASST 7 cut(s) 41, 64, 259, 499, 508, 518, 553
SfaNI GCATC 2 cut(s) 403, 451
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 494
SlaI CTCGAG 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 243, 588
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 6 cut(s) 162, 211, 325, 338, 530, 597
SsiI CCGC 2 cut(s) 140, 317
SspI AATATT 1 cut(s) 449
SspMI CTAG 3 cut(s) 101, 491, 632
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 3 cut(s) 76, 107, 542
TaiI ACGT 1 cut(s) 64
TaqI TCGA 3 cut(s) 115, 262, 717
TasI AATT 6 cut(s) 162, 211, 325, 338, 530, 597
TatI WGTACW 1 cut(s) 235
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 2 cut(s) 54, 710
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 174, 494
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 281
VneI GTGCAC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 494
XagI CCTNNNNNAGG 1 cut(s) 501
XapI RAATTY 1 cut(s) 162
XceI RCATGY 4 cut(s) 16, 242, 337, 354
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 3 cut(s) 101, 491, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.