Rmu_sc0009205.1_g000006
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009205.1
OG0000469
Physical Location & Seq
Reverse (-)
46126 .. 47475
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009205.1_g000006.1.cds

Sequence Viewer

Length: 810 bp
atgcatccgaggagtggtggcgtggcaaaattgagaaaaacaaggaatatgcaatgttcaaagaaaaaggggattacacctgagtttgaagtcaagttggataagatgttcatgggtattgcagccaccggaaagcatgcatatgcaccatcttctacactacccattcctagaagtccagagcaaggtggcaaccttgaaggtagtggtgactctgaggacaatgatcaacctaaaaccactctacctaaaagaaaaagaaatgagagagctgagaaagggtctgctcatgatacaagagtgtttctatcggttcttcgaaatcccgattggaattttcctaaaccaccaccgggaaaatattatgtggtagattcgggataccctcaaatgagtgggtttttgggaccttacaaaggtccaagacaacattttcaagaatatcataggcaagaaccaagaaatgaaaaagaggtatttaaccaagcacactcttctcttagaagcgttatagaacgcacatttggagtttggaaaaaaaagtggaagattttaaaggacatgcaaggtttttcatttgagaaacaagtgaagattgtcattgccaccatgacacttcataattatatacggagacatgcacatcgtgataggcattttgttcacggtgaagaaagagaaggtgatgggtcaagtcatgggatagagatggatgatgatgtagaagaagaatatcatggtcatggtgcacaagaaatggaaatgataagaaatagcattactcaaactttgatgagtgcacgaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

269

Amino Acids

30.89

Weight (kDa)

9.48

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 334
AdeI CACNNNGTG 1 cut(s) 647
AfiI CCNNNNNNNGG 4 cut(s) 14, 185, 353, 416
AgsI TTSAA 4 cut(s) 60, 89, 200, 437
AjuI GAANNNNNNNTTGG 4 cut(s) 313, 345, 507, 539
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw21I GWGCWC 2 cut(s) 751, 802
Alw26I GTCTC 1 cut(s) 628
Alw44I GTGCAC 2 cut(s) 747, 798
ApaLI GTGCAC 2 cut(s) 747, 798
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 407, 419
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 221, 680, 695
AsuII TTCGAA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 407, 419
BaeGI GKGCMC 2 cut(s) 751, 802
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
Bbv12I GWGCWC 2 cut(s) 751, 802
BbvI GCAGC 1 cut(s) 134
BccI CCATC 3 cut(s) 157, 680, 703
BciVI GTATCC 1 cut(s) 374
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 374
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 2 cut(s) 407, 419
BmgT120I GGNCC 2 cut(s) 407, 419
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 13
Bpu14I TTCGAA 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 185, 353, 416
Bse3DI GCAATG 2 cut(s) 59, 600
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 4, 718
BseLI CCNNNNNNNGG 4 cut(s) 14, 185, 353, 416
BseMI GCAATG 2 cut(s) 59, 600
BseMII CTCAG 3 cut(s) 72, 207, 264
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 2 cut(s) 751, 802
BseXI GCAGC 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 751, 802
BsiSI CCGG 2 cut(s) 129, 353
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 4 cut(s) 14, 185, 353, 416
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 751, 802
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 3 cut(s) 73, 208, 265
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 319
BsrDI GCAATG 2 cut(s) 59, 600
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 1 cut(s) 499
BstBI TTCGAA 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 4 cut(s) 81, 216, 273, 500
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 4, 718
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 1 cut(s) 226
BstNSI RCATGY 3 cut(s) 140, 565, 641
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 2 cut(s) 751, 802
BstV1I GCAGC 1 cut(s) 134
BsuI GTATCC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 4, 718
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 407, 419
CviAII CATG 9 cut(s) 112, 137, 290, 562, 610, 638, 698, 737, 743
CviJI RGCY 2 cut(s) 125, 272
CviKI_1 RGCY 2 cut(s) 125, 272
DdeI CTNAG 4 cut(s) 81, 216, 273, 500
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraI TTTAAA 1 cut(s) 555
DraIII CACNNNGTG 1 cut(s) 647
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 407, 419
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 407
EcoT22I ATGCAT 2 cut(s) 6, 142
FaeI CATG 9 cut(s) 115, 140, 293, 565, 613, 641, 701, 740, 746
FaqI GGGAC 1 cut(s) 420
FatI CATG 9 cut(s) 111, 136, 289, 561, 609, 637, 697, 736, 742
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 123
HapII CCGG 2 cut(s) 129, 353
Hin1II CATG 9 cut(s) 115, 140, 293, 565, 613, 641, 701, 740, 746
HinfI GANTC 2 cut(s) 212, 374
HpaII CCGG 2 cut(s) 129, 353
HphI GGTGA 3 cut(s) 221, 680, 695
Hpy166II GTNNAC 3 cut(s) 664, 749, 800
Hpy188I TCNGA 2 cut(s) 9, 217
Hpy188III TCNNGA 6 cut(s) 179, 290, 326, 378, 437, 647
Hpy8I GTNNAC 3 cut(s) 664, 749, 800
HpyAV CCTTC 2 cut(s) 194, 674
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4V TGCA 9 cut(s) 4, 52, 122, 140, 146, 565, 641, 749, 800
HpyF3I CTNAG 4 cut(s) 81, 216, 273, 500
Hsp92II CATG 9 cut(s) 115, 140, 293, 565, 613, 641, 701, 740, 746
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 93, 142, 192, 366
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 8 cut(s) 144, 308, 486, 559, 604, 683, 737, 740
MhlI GDGCHC 2 cut(s) 751, 802
MluCI AATT 3 cut(s) 29, 334, 622
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 3, 211, 396, 466
Mph1103I ATGCAT 2 cut(s) 6, 142
MseI TTAA 2 cut(s) 480, 554
MslI CAYNNNNRTG 2 cut(s) 141, 741
MspI CCGG 2 cut(s) 129, 353
MspR9I CCNGG 1 cut(s) 354
NciI CCSGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 142
NdeII GATC 1 cut(s) 226
NlaIII CATG 9 cut(s) 115, 140, 293, 565, 613, 641, 701, 740, 746
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 2 cut(s) 6, 142
NspI RCATGY 3 cut(s) 140, 565, 641
NspV TTCGAA 1 cut(s) 319
PaeI GCATGC 1 cut(s) 140
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 2 cut(s) 407, 419
PspPPI RGGWCCY 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 141, 741
SaqAI TTAA 2 cut(s) 480, 554
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 407, 419
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 751, 802
SfaNI GCATC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 319
SinI GGWCC 2 cut(s) 407, 419
SmiMI CAYNNNNRTG 2 cut(s) 141, 741
SphI GCATGC 1 cut(s) 140
Sse9I AATT 3 cut(s) 29, 334, 622
SspI AATATT 1 cut(s) 362
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 668
TaqI TCGA 1 cut(s) 319
TasI AATT 3 cut(s) 29, 334, 622
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 480, 554
Tru9I TTAA 2 cut(s) 480, 554
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 100, 480, 564, 608
TspGWI ACGGA 1 cut(s) 646
VneI GTGCAC 2 cut(s) 747, 798
VpaK11BI GGWCC 2 cut(s) 407, 419
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 334
XceI RCATGY 3 cut(s) 140, 565, 641
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 2 cut(s) 6, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.