Rw5G005670
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000469
Physical Location & Seq
Forward (+)
6002286 .. 6002922
637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G005670.1

Sequence Viewer

Length: 492 bp
ATGGGAATGAAAAAAATGGAAAATATTATGTATTATGTTGTAGATTCCGGATACCCTCAAATGAATGGGTTTTTGGGACCTTACAAAGGTCCGAGACAACATTTTCAACAATACCATAGGCAAGAACCAAGAAATGAAAAAGAGGTATTTAACCAAGCACACTCTTCTCTTAGAAGCGTTATAGAACGCATATTTGGAGTTTGGAAAAAAAAGTGGAAGATTTTAAGGGACATGCAAGGTTATTCATTTGAAAAGCAAGTGAAGATTGTCATTGCTACCATGACACTTCGTAATTATATATGGAGACATGCATATGGTGATAGACATTTTGTCCGCAGTGAAAAAAGAGAAGGTTATGGGTCAAGTGGTGAGATAGAAATGGATGATGATATAGAAGAAGAATATCATGGTCACGGTGCACAAGAAATGGAAGCAATAAGAAATAGCATTACTCAAAGTTTGATGAATGCGCGTAATAACGTGAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

163

Amino Acids

19.4

Weight (kDa)

9.02

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 6 - 98 3.2e-11 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 107, 251
AhdI GACNNNNNGTC 1 cut(s) 329
AjuI GAANNNNNNNTTGG 4 cut(s) 56, 88, 177, 209
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 88, 298
Alw44I GTGCAC 1 cut(s) 417
Aor13HI TCCGGA 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 417
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 77, 89
AsuHPI GGTGA 2 cut(s) 329, 380
AvaII GGWCC 2 cut(s) 77, 89
BaeGI GKGCMC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BciVI GTATCC 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 88, 298
BfuI GTATCC 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 77, 89
BmeRI GACNNNNNGTC 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 77, 89
BmiI GGNNCC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 47
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 2 cut(s) 90, 242
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 88, 298
BsmFI GGGAC 2 cut(s) 90, 242
BsmI GAATGC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 47
BspACI CCGC 1 cut(s) 334
BspEI TCCGGA 1 cut(s) 47
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 472
BstMAI GTCTC 2 cut(s) 88, 298
BstNSI RCATGY 2 cut(s) 235, 311
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 1 cut(s) 472
BsuI GTATCC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 77, 89
CviAII CATG 4 cut(s) 232, 280, 308, 407
DdeI CTNAG 1 cut(s) 170
DriI GACNNNNNGTC 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 169
Eam1105I GACNNNNNGTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 77, 89
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 4 cut(s) 235, 283, 311, 410
FaqI GGGAC 2 cut(s) 90, 242
FatI CATG 4 cut(s) 231, 279, 307, 406
FauNDI CATATG 1 cut(s) 313
FokI GGATG 1 cut(s) 395
GlaI GCGC 1 cut(s) 471
HapII CCGG 1 cut(s) 48
HhaI GCGC 1 cut(s) 472
Hin1II CATG 4 cut(s) 235, 283, 311, 410
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 329, 380
Hpy166II GTNNAC 2 cut(s) 419, 484
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 2 cut(s) 419, 484
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 235, 311, 419
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 4 cut(s) 235, 283, 311, 410
HspAI GCGC 1 cut(s) 470
Kpn2I TCCGGA 1 cut(s) 47
LpnPI CCDG 1 cut(s) 61
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 410
MboII GAAGA 5 cut(s) 156, 229, 274, 407, 410
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 292
MnlI CCTC 2 cut(s) 66, 136
Mph1103I ATGCAT 1 cut(s) 313
MroI TCCGGA 1 cut(s) 47
MseI TTAA 2 cut(s) 150, 224
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 472
MvnI CGCG 1 cut(s) 472
NdeI CATATG 1 cut(s) 313
NlaIII CATG 4 cut(s) 235, 283, 311, 410
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 2 cut(s) 235, 311
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 77, 89
PspPPI RGGWCCY 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 2 cut(s) 150, 224
Sau96I GGNCC 2 cut(s) 77, 89
SduI GDGCHC 1 cut(s) 421
SetI ASST 6 cut(s) 82, 91, 147, 241, 355, 483
SinI GGWCC 2 cut(s) 77, 89
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 1 cut(s) 292
SsiI CCGC 1 cut(s) 334
SspI AATATT 1 cut(s) 25
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 1 cut(s) 483
TasI AATT 1 cut(s) 292
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 150, 224
Tru9I TTAA 2 cut(s) 150, 224
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 5 cut(s) 23, 77, 150, 234, 479
TspRI CASTG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 2 cut(s) 77, 89
XagI CCTNNNNNAGG 1 cut(s) 84
XceI RCATGY 2 cut(s) 235, 311
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.