Prupe.1G096200_v2.0.a1
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000469
Physical Location & Seq
Reverse (-)
7589545 .. 7590935
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G096200.1

Sequence Viewer

Length: 978 bp
ATGGACTTAAATGAAGTTGACAATCGTCATTCAAGTTTTGAAAGTGATTCATCATCTCATTCAAGTTCTGAAAATGATTCATCATCTGATTTGGATGATTCACCTGGAGAGTTCCTTTTAATTACAAAACTAAATGCATATTACTCGCGTTTACCTAAAGAGCCATGTATGACTTCAGAACTCTCAGGTCGCCAATTTGTTATAGAGTTGTTGAATGGACATCCAGATAGGTTATTTGATTTTGCTATAATGAATAAGAACACATTTACGAACTTGTGTTCAACATTGAAGGGCTTGGATTTCTTACAAGATGATAGATCAATTTGCGTCGAGGGGATGATTGCTGAGAAATCTAGACAATTTAACAGAATTCTCAAAGCAATATGTCAACTTGGTACTCCGATAATTCAACCTCCAAATTTGGACGTGACACCACCTAAAATCATGGAGAATCCTAATTACCACCTGTGGTTTAAGATAAATGATTGTATTGGTGCTATTGATGGAACACATATCAGTGCATGGGCTCCTACATCAAAACAAATTCCATATCGAGGAAAATATTATCTTGTTGATTCTGGTTATGCAAATATGCGTGAGTTTCTCGCACCATATCGTGGAGAGCGTTATCACTTGCGTGATTATAGAGGGAGAGGCAGACATCCAAGGGAGGCAATGGAATTATTCTACTATAGGCATTCATCACTACGTAACGGTATTGAAAGATGCTTTGGAGTGCTTAAGGCTCGCTTTCCTATTCTGAAACGTATTCCTGTTGCTTGTTGTACCATGCATAACTTCATTAGAATGCAATCAAGAAATGACATCATATTTCATCAATATCAAGCCAATGATCTTCAAGTGGTAGATGAAGAACACATCCATTTGCATGAGGACAATGCTAATGAAATGAGTGATGCTAGAGATCACATTGCCGAAGCAATGGATGGATTATATTCAGAATCATTAGTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

326

Amino Acids

37.51

Weight (kDa)

5.86

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 976
AccB7I CCANNNNNTGG 1 cut(s) 617
AccII CGCG 1 cut(s) 148
AcsI RAATTY 3 cut(s) 369, 418, 543
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 397, 787
AfiI CCNNNNNNNGG 2 cut(s) 554, 617
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 9 cut(s) 33, 41, 63, 214, 282, 289, 410, 722, 860
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AleI CACNNNNGTG 1 cut(s) 636
ApoI RAATTY 3 cut(s) 369, 418, 543
AsuHPI GGTGA 1 cut(s) 93
BanII GRGCYC 1 cut(s) 529
BccI CCATC 2 cut(s) 497, 941
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 1 cut(s) 105
BfaI CTAG 2 cut(s) 354, 921
BfmI CTRYAG 1 cut(s) 691
BfrI CTTAAG 1 cut(s) 740
Bme1390I CCNGG 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 716, 907
BoxI GACNNNNGTC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 710
BsaJI CCNNGG 1 cut(s) 665
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 617
Bse3DI GCAATG 3 cut(s) 681, 930, 948
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 6 cut(s) 100, 220, 342, 661, 879, 952
BseLI CCNNNNNNNGG 2 cut(s) 554, 617
BseMI GCAATG 3 cut(s) 681, 930, 948
BseMII CTCAG 2 cut(s) 198, 336
Bsh1236I CGCG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 554, 617
BsmI GAATGC 2 cut(s) 697, 813
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 3 cut(s) 317, 853, 925
BspCNI CTCAG 2 cut(s) 197, 337
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 3 cut(s) 681, 930, 948
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 3 cut(s) 317, 853, 925
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 716
BstAFI CTTAAG 1 cut(s) 740
BstBAI YACGTR 1 cut(s) 710
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 2 cut(s) 184, 345
BstF5I GGATG 6 cut(s) 100, 220, 342, 661, 879, 952
BstFNI CGCG 1 cut(s) 148
BstKTI GATC 3 cut(s) 320, 856, 928
BstMBI GATC 3 cut(s) 317, 853, 925
BstNI CCWGG 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 691
BstSNI TACGTA 1 cut(s) 710
BstUI CGCG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 6 cut(s) 100, 220, 342, 661, 879, 952
BtsIMutI CAGTG 1 cut(s) 523
Cac8I GCNNGC 1 cut(s) 748
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 396, 786
CviAII CATG 5 cut(s) 165, 445, 522, 790, 890
CviJI RGCY 5 cut(s) 163, 294, 527, 746, 848
CviKI_1 RGCY 5 cut(s) 163, 294, 527, 746, 848
CviQI GTAC 2 cut(s) 396, 786
DdeI CTNAG 2 cut(s) 184, 345
DpnI GATC 3 cut(s) 319, 855, 927
DpnII GATC 3 cut(s) 317, 853, 925
Eco105I TACGTA 1 cut(s) 710
Eco130I CCWWGG 1 cut(s) 665
Eco24I GRGCYC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 665
EcoT22I ATGCAT 2 cut(s) 139, 795
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 665
FaeI CATG 5 cut(s) 168, 448, 525, 793, 893
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 5 cut(s) 164, 444, 521, 789, 889
FokI GGATG 6 cut(s) 107, 207, 349, 648, 866, 959
FriOI GRGCYC 1 cut(s) 529
FspBI CTAG 2 cut(s) 354, 921
GsuI CTGGAG 1 cut(s) 126
HgaI GACGC 1 cut(s) 316
Hin1II CATG 5 cut(s) 168, 448, 525, 793, 893
HincII GTYRAC 2 cut(s) 19, 389
HindII GTYRAC 2 cut(s) 19, 389
HinfI GANTC 6 cut(s) 47, 77, 98, 451, 575, 962
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 3 cut(s) 19, 152, 389
Hpy188I TCNGA 6 cut(s) 70, 88, 178, 402, 762, 961
Hpy188III TCNNGA 3 cut(s) 224, 354, 816
Hpy8I GTNNAC 3 cut(s) 19, 152, 389
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4IV ACGT 3 cut(s) 426, 709, 766
HpyCH4V TGCA 6 cut(s) 137, 521, 587, 793, 811, 889
HpyF3I CTNAG 2 cut(s) 184, 345
HpySE526I ACGT 3 cut(s) 426, 709, 766
Hsp92II CATG 5 cut(s) 168, 448, 525, 793, 893
Kzo9I GATC 3 cut(s) 317, 853, 925
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 7 cut(s) 90, 117, 171, 237, 479, 564, 786
LweI GCATC 2 cut(s) 716, 907
MaeI CTAG 2 cut(s) 354, 921
MaeII ACGT 3 cut(s) 426, 709, 766
MaeIII GTNAC 2 cut(s) 427, 710
MalI GATC 3 cut(s) 319, 855, 927
MboI GATC 3 cut(s) 317, 853, 925
MboII GAAGA 2 cut(s) 848, 884
MhlI GDGCHC 1 cut(s) 529
MnlI CCTC 7 cut(s) 325, 423, 548, 641, 647, 664, 886
Mph1103I ATGCAT 2 cut(s) 139, 795
MseI TTAA 5 cut(s) 8, 119, 363, 474, 741
MslI CAYNNNNRTG 4 cut(s) 516, 636, 806, 888
MspCI CTTAAG 1 cut(s) 740
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 2 cut(s) 697, 813
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 148
NdeII GATC 3 cut(s) 317, 853, 925
NlaIII CATG 5 cut(s) 168, 448, 525, 793, 893
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 2 cut(s) 139, 795
OliI CACNNNNGTG 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PctI GAATGC 2 cut(s) 697, 813
PfeI GAWTC 6 cut(s) 47, 77, 98, 451, 575, 962
PflMI CCANNNNNTGG 1 cut(s) 617
Ppu21I YACGTR 1 cut(s) 710
PshAI GACNNNNGTC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 976
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 528
RsaI GTAC 2 cut(s) 397, 787
RsaNI GTAC 2 cut(s) 396, 786
RseI CAYNNNNRTG 4 cut(s) 516, 636, 806, 888
SaqAI TTAA 5 cut(s) 8, 119, 363, 474, 741
Sau3AI GATC 3 cut(s) 317, 853, 925
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 2 cut(s) 716, 907
SfcI CTRYAG 1 cut(s) 691
SmiMI CAYNNNNRTG 4 cut(s) 516, 636, 806, 888
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
SnaBI TACGTA 1 cut(s) 710
SspI AATATT 1 cut(s) 563
SspMI CTAG 2 cut(s) 354, 921
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 1 cut(s) 716
TaiI ACGT 3 cut(s) 429, 712, 769
TaqI TCGA 2 cut(s) 330, 553
TfiI GAWTC 6 cut(s) 47, 77, 98, 451, 575, 962
Tru1I TTAA 5 cut(s) 8, 119, 363, 474, 741
Tru9I TTAA 5 cut(s) 8, 119, 363, 474, 741
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 9 cut(s) 27, 39, 69, 266, 690, 790, 824, 885, 921
TspRI CASTG 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 617
Vha464I CTTAAG 1 cut(s) 740
XapI RAATTY 3 cut(s) 369, 418, 543
XbaI TCTAGA 1 cut(s) 353
XspI CTAG 2 cut(s) 354, 921
Zsp2I ATGCAT 2 cut(s) 139, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.