Rmu_sc0000079.1_g000057
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000079.1
OG0000469
Physical Location & Seq
Reverse (-)
265271 .. 266404
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000079.1_g000057.1.cds

Sequence Viewer

Length: 906 bp
atggatgcttctggagataaggaggagatagatcaaattatatgtctatgtgctcgtcttattcaagtctatctcgaaaaggacattcagaaaactccatgtatgacaagctcccaaacaggttacatttggttaatggaagtgttagaaggcaatgaaagtaggtgttacaatcaatttaggatggataagcaagtcttcctcatgcttttaaatgatttggaaaagataatggatggttcaagaaacatgagtattgttgaaatgttggctatgtttctctatattgtgggacaaggtcagacaaataggagtacacaagaacgttttcaacgttcgggtgagacggttagtaggtattttgatataatgttagagattttctataatatggcaaaagtgctcataaagccattggatccggaatttaggagcatcccacaagaaattctaactgattcaagatacatgcctcattttaaggattgcattggcgctatcgatggtgttcatgtccaagcttcgatatctccatgtgatcaagtgccatacattggaagaaaagggatacccacccaaaatgtattggctatttgcaacttcaacatgcaattcacatttgtatgtgcagggtgggaaggcaccgcccatgatagtagagtattcttatcagctctacgcaatcctcgatcgaattttcctaaacccccaaatggatatccacaaatgaagggttatttaggaccatataaaggtgagcggtaccaccttccacattttcgtagaggtgatgaaccgaccggtcataaagaaatattcaatcatgcacattcttcactcaggaagagatggaggataatgaacatgatggagatggtccaggaagacaagaaatggaggtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

301

Amino Acids

35.07

Weight (kDa)

8.03

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 762
AccB1I GGYRCC 2 cut(s) 641, 762
AccB7I CCANNNNNTGG 1 cut(s) 554
AccBSI CCGCTC 1 cut(s) 760
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 2 cut(s) 645, 760
AclI AACGTT 2 cut(s) 325, 334
AclWI GGATC 2 cut(s) 413, 426
AcsI RAATTY 3 cut(s) 425, 447, 694
AfaI GTAC 2 cut(s) 316, 764
AfiI CCNNNNNNNGG 3 cut(s) 554, 713, 752
AgeI ACCGGT 1 cut(s) 800
AgsI TTSAA 7 cut(s) 65, 243, 263, 332, 462, 604, 820
AjnI CCWGG 1 cut(s) 879
AluBI AGCT 3 cut(s) 111, 521, 674
AluI AGCT 3 cut(s) 111, 521, 674
Alw21I GWGCWC 2 cut(s) 55, 405
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 413, 426
Aor13HI TCCGGA 1 cut(s) 421
ApoI RAATTY 3 cut(s) 425, 447, 694
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AsiGI ACCGGT 1 cut(s) 800
Asp700I GAANNNNTTC 1 cut(s) 327
Asp718I GGTACC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 2 cut(s) 743, 877
AsuHPI GGTGA 3 cut(s) 353, 767, 800
AvaII GGWCC 2 cut(s) 743, 877
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 2 cut(s) 641, 762
BbsI GAAGAC 2 cut(s) 190, 891
Bbv12I GWGCWC 2 cut(s) 55, 405
BccI CCATC 6 cut(s) 178, 230, 497, 843, 862, 868
BciT130I CCWGG 1 cut(s) 881
BciVI GTATCC 1 cut(s) 561
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 338
BfoI RGCGCY 1 cut(s) 498
BfuI GTATCC 1 cut(s) 561
Bme1390I CCNGG 1 cut(s) 881
Bme18I GGWCC 2 cut(s) 743, 877
BmgT120I GGNCC 2 cut(s) 743, 877
BmiI GGNNCC 3 cut(s) 420, 643, 764
BmrFI CCNGG 1 cut(s) 881
BmsI GCATC 1 cut(s) 444
BpiI GAAGAC 2 cut(s) 190, 891
BpmI CTGGAG 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 501
BsaWI WCCGGW 2 cut(s) 421, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 713, 752
Bse118I RCCGGY 1 cut(s) 800
Bse3DI GCAATG 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 1 cut(s) 881
BseCI ATCGAT 1 cut(s) 501
BseGI GGATG 4 cut(s) 10, 189, 241, 435
BseLI CCNNNNNNNGG 3 cut(s) 554, 713, 752
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 853
BseRI GAGGAG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 648
Bsh1285I CGRYCG 2 cut(s) 692, 801
BshNI GGYRCC 2 cut(s) 641, 762
BshTI ACCGGT 1 cut(s) 800
BshVI ATCGAT 1 cut(s) 501
BsiEI CGRYCG 2 cut(s) 692, 801
BsiHKAI GWGCWC 2 cut(s) 55, 405
BsiSI CCGG 2 cut(s) 422, 801
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 3 cut(s) 554, 713, 752
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 55, 405
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 4 cut(s) 31, 418, 538, 689
BspACI CCGC 2 cut(s) 645, 760
BspCNI CTCAG 1 cut(s) 852
BspDI ATCGAT 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 421
BspLI GGNNCC 3 cut(s) 420, 643, 764
BspPI GGATC 2 cut(s) 413, 426
BspT107I GGYRCC 2 cut(s) 641, 762
BsrBI CCGCTC 1 cut(s) 760
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 800
BssAI RCCGGY 1 cut(s) 800
BssMI GATC 4 cut(s) 31, 418, 538, 689
Bst2UI CCWGG 1 cut(s) 881
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 839
BstDEI CTNAG 1 cut(s) 839
BstF5I GGATG 4 cut(s) 10, 189, 241, 435
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 4 cut(s) 34, 421, 541, 692
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 4 cut(s) 31, 418, 538, 689
BstMCI CGRYCG 2 cut(s) 692, 801
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstNI CCWGG 1 cut(s) 881
BstNSI RCATGY 2 cut(s) 472, 610
BstSCI CCNGG 1 cut(s) 879
BstV2I GAAGAC 2 cut(s) 190, 891
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 501
BsuI GTATCC 1 cut(s) 561
BsuTUI ATCGAT 1 cut(s) 501
BtsCI GGATG 4 cut(s) 10, 189, 241, 435
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 2 cut(s) 743, 877
ClaI ATCGAT 1 cut(s) 501
Csp6I GTAC 2 cut(s) 315, 763
CspAI ACCGGT 1 cut(s) 800
CviJI RGCY 6 cut(s) 111, 272, 412, 521, 590, 674
CviKI_1 RGCY 6 cut(s) 111, 272, 412, 521, 590, 674
CviQI GTAC 2 cut(s) 315, 763
DdeI CTNAG 1 cut(s) 839
DpnI GATC 4 cut(s) 33, 420, 540, 691
DpnII GATC 4 cut(s) 31, 418, 538, 689
DraI TTTAAA 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 839
EarI CTCTTC 1 cut(s) 839
Eco32I GATATC 2 cut(s) 528, 719
Eco47I GGWCC 2 cut(s) 743, 877
EcoRII CCWGG 1 cut(s) 879
EcoRV GATATC 2 cut(s) 528, 719
Esp3I CGTCTC 1 cut(s) 338
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 306
FbaI TGATCA 1 cut(s) 538
FokI GGATG 4 cut(s) 17, 196, 248, 422
GlaI GCGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 498
HapII CCGG 2 cut(s) 422, 801
HhaI GCGC 1 cut(s) 497
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 1 cut(s) 458
HpaII CCGG 2 cut(s) 422, 801
HphI GGTGA 3 cut(s) 353, 767, 800
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 2 cut(s) 90, 303
Hpy188III TCNNGA 6 cut(s) 12, 74, 243, 422, 462, 841
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 4 cut(s) 143, 632, 724, 779
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 325, 334
HpyCH4V TGCA 5 cut(s) 489, 597, 610, 629, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 1 cut(s) 839
HpySE526I ACGT 2 cut(s) 325, 334
HspAI GCGC 1 cut(s) 495
Kpn2I TCCGGA 1 cut(s) 421
KpnI GGTACC 1 cut(s) 766
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 4 cut(s) 31, 418, 538, 689
LmnI GCTCC 2 cut(s) 116, 432
LpnPI CCDG 7 cut(s) 105, 435, 615, 814, 826, 866, 893
LweI GCATC 1 cut(s) 444
MaeII ACGT 2 cut(s) 325, 334
MaeIII GTNAC 2 cut(s) 122, 167
MalI GATC 4 cut(s) 33, 420, 540, 691
MbiI CCGCTC 1 cut(s) 760
MboI GATC 4 cut(s) 31, 418, 538, 689
MboII GAAGA 5 cut(s) 190, 570, 825, 856, 896
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 2 cut(s) 55, 405
MluCI AATT 6 cut(s) 36, 176, 425, 447, 611, 694
MnlI CCTC 7 cut(s) 16, 212, 483, 696, 779, 846, 891
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 4 cut(s) 134, 212, 480, 904
MslI CAYNNNNRTG 1 cut(s) 622
MspI CCGG 2 cut(s) 422, 801
MspR9I CCNGG 1 cut(s) 881
MvaI CCWGG 1 cut(s) 881
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeII GATC 4 cut(s) 31, 418, 538, 689
NlaIV GGNNCC 3 cut(s) 420, 643, 764
NspI RCATGY 2 cut(s) 472, 610
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 685
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 458
PflFI GACNNNGTC 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 554
PfoI TCCNGGA 1 cut(s) 879
PinAI ACCGGT 1 cut(s) 800
Ple19I CGATCG 1 cut(s) 692
Psp1406I AACGTT 2 cut(s) 325, 334
Psp6I CCWGG 1 cut(s) 879
PspGI CCWGG 1 cut(s) 879
PspN4I GGNNCC 3 cut(s) 420, 643, 764
PspPI GGNCC 2 cut(s) 743, 877
PsuI RGATCY 1 cut(s) 418
PsyI GACNNNGTC 1 cut(s) 297
PvuI CGATCG 1 cut(s) 692
RsaI GTAC 2 cut(s) 316, 764
RsaNI GTAC 2 cut(s) 315, 763
RseI CAYNNNNRTG 1 cut(s) 622
SaqAI TTAA 4 cut(s) 134, 212, 480, 904
Sau3AI GATC 4 cut(s) 31, 418, 538, 689
Sau96I GGNCC 2 cut(s) 743, 877
ScrFI CCNGG 1 cut(s) 881
SduI GDGCHC 2 cut(s) 55, 405
SfaNI GCATC 1 cut(s) 444
SinI GGWCC 2 cut(s) 743, 877
SmiMI CAYNNNNRTG 1 cut(s) 622
Sse9I AATT 6 cut(s) 36, 176, 425, 447, 611, 694
SsiI CCGC 2 cut(s) 645, 760
SspI AATATT 1 cut(s) 816
StyD4I CCNGG 1 cut(s) 879
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 328, 337
TaqI TCGA 5 cut(s) 75, 501, 524, 688, 692
TasI AATT 6 cut(s) 36, 176, 425, 447, 611, 694
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 4 cut(s) 134, 212, 480, 904
Tru9I TTAA 4 cut(s) 134, 212, 480, 904
TspDTI ATGAA 5 cut(s) 171, 500, 743, 807, 875
Tth111I GACNNNGTC 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 743, 877
XapI RAATTY 3 cut(s) 425, 447, 694
XceI RCATGY 2 cut(s) 472, 610
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.