Rmu_ssc0000486.1_g000013
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000486.1
OG0000469
Physical Location & Seq
Forward (+)
45825 .. 46917
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000486.1_g000013.1.cds

Sequence Viewer

Length: 780 bp
atgagtatcattgaaatgttggctatgtttctttatattttgggacaaggtcagactaataggaatacacaagaacgttttcaacgttctggtgagacggattgcattggtgctattgatggtgttcatgttcaagcttcgatatctccatgtgatcaggtgccatatattggaagaaaagggatacccacccaaaatatattggctatatgcaacttcgacatgcaattcacatttgcatgtgcagggtgggaaggcactgcccatgatagtagagtattcttatcagctctacgcgatcctcaatcgaattttcctaaaccccgaaatggaaaatactatgtggtggatgccggatatccacaaatgaagggttatttaggaccatataaaggtgagcggtaccaccttccacatttctgtagaggtgatgagccgaccggtcataaagaaatattcaatcatgcacattcttcacttaggggtgttattgagcgcacttttggggtatggaagaagaaatggagtattttacgtgatatgcctcactttccttataaaaaacaagttaagatagttattgctacgatggctcttcataactacatacgaagatatgctccacgagatattgattttgatgaaagtggaaattactcaagtgaagagactagtgaagagatggaggataatgaacatgatggagatggtcctggaagacaagaaatggaggtgttaagaaatgcaattgcacaaagtctaatgaatgcatctacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

259

Amino Acids

29.5

Weight (kDa)

6.36

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 2 cut(s) 160, 402
AccB7I CCANNNNNTGG 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 400
AccII CGCG 1 cut(s) 297
AciI CCGC 1 cut(s) 400
AclI AACGTT 2 cut(s) 76, 85
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 170, 329, 392
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 4 cut(s) 14, 83, 134, 460
AhlI ACTAGT 1 cut(s) 671
AjnI CCWGG 1 cut(s) 712
AluBI AGCT 2 cut(s) 137, 290
AluI AGCT 2 cut(s) 137, 290
Alw26I GTCTC 2 cut(s) 89, 662
AlwI GGATC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 310
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 2 cut(s) 383, 710
AsuHPI GGTGA 3 cut(s) 104, 407, 440
AvaII GGWCC 2 cut(s) 383, 710
BanI GGYRCC 2 cut(s) 160, 402
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 724
BccI CCATC 5 cut(s) 113, 583, 676, 695, 701
BciT130I CCWGG 1 cut(s) 714
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 89, 662
BcuI ACTAGT 1 cut(s) 671
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 1 cut(s) 421
BfuI GTATCC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 2 cut(s) 383, 710
BmgT120I GGNCC 2 cut(s) 383, 710
BmiI GGNNCC 2 cut(s) 162, 404
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 724
BpuEI CTTGAG 1 cut(s) 643
BsaAI YACGTR 1 cut(s) 536
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 329, 392
Bse118I RCCGGY 1 cut(s) 440
BseBI CCWGG 1 cut(s) 714
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 3 cut(s) 170, 329, 392
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 441
BshNI GGYRCC 2 cut(s) 160, 402
BshTI ACCGGT 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 441
BsiSI CCGG 2 cut(s) 354, 441
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 170, 329, 392
BsmAI GTCTC 2 cut(s) 89, 662
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 772
Bsp143I GATC 2 cut(s) 154, 298
BspACI CCGC 1 cut(s) 400
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 162, 404
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 600
BspT107I GGYRCC 2 cut(s) 160, 402
BsrBI CCGCTC 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 440
BssMI GATC 2 cut(s) 154, 298
BssSI CACGAG 1 cut(s) 624
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 714
Bst6I CTCTTC 3 cut(s) 600, 660, 672
BstBAI YACGTR 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 479, 777
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 2 cut(s) 157, 301
BstMAI GTCTC 2 cut(s) 89, 662
BstMBI GATC 2 cut(s) 154, 298
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 2 cut(s) 226, 243
BstSCI CCNGG 1 cut(s) 712
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 724
BsuI GTATCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 383, 710
Csp6I GTAC 1 cut(s) 403
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 7 cut(s) 128, 150, 223, 240, 266, 464, 698
CviJI RGCY 6 cut(s) 23, 137, 206, 290, 436, 593
CviKI_1 RGCY 6 cut(s) 23, 137, 206, 290, 436, 593
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 479, 777
DpnI GATC 2 cut(s) 156, 300
DpnII GATC 2 cut(s) 154, 298
Eam1104I CTCTTC 3 cut(s) 600, 660, 672
EarI CTCTTC 3 cut(s) 600, 660, 672
Eco32I GATATC 2 cut(s) 144, 359
Eco47I GGWCC 2 cut(s) 383, 710
EcoRII CCWGG 1 cut(s) 712
EcoRV GATATC 2 cut(s) 144, 359
EcoT22I ATGCAT 1 cut(s) 772
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 7 cut(s) 131, 153, 226, 243, 269, 467, 701
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 127, 149, 222, 239, 265, 463, 697
FbaI TGATCA 1 cut(s) 154
FokI GGATG 1 cut(s) 362
FspBI CTAG 1 cut(s) 672
GlaI GCGC 1 cut(s) 497
HapII CCGG 2 cut(s) 354, 441
HhaI GCGC 1 cut(s) 498
Hin1II CATG 7 cut(s) 131, 153, 226, 243, 269, 467, 701
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 135
HpaII CCGG 2 cut(s) 354, 441
HphI GGTGA 3 cut(s) 104, 407, 440
Hpy188I TCNGA 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 248, 364, 419
HpyCH4IV ACGT 3 cut(s) 76, 85, 535
HpyCH4V TGCA 9 cut(s) 105, 213, 226, 239, 245, 467, 746, 752, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 2 cut(s) 479, 777
HpySE526I ACGT 3 cut(s) 76, 85, 535
Hsp92II CATG 7 cut(s) 131, 153, 226, 243, 269, 467, 701
HspAI GCGC 1 cut(s) 496
KpnI GGTACC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 154, 298
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 625
LpnPI CCDG 7 cut(s) 75, 143, 231, 367, 454, 699, 726
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 672
MaeII ACGT 3 cut(s) 76, 85, 535
MalI GATC 2 cut(s) 156, 300
MbiI CCGCTC 1 cut(s) 400
MboI GATC 2 cut(s) 154, 298
MboII GAAGA 9 cut(s) 186, 465, 526, 529, 587, 624, 677, 689, 729
MfeI CAATTG 1 cut(s) 747
MluCI AATT 4 cut(s) 227, 310, 652, 747
MnlI CCTC 5 cut(s) 312, 419, 555, 679, 724
Mph1103I ATGCAT 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 570, 737
MslI CAYNNNNRTG 2 cut(s) 14, 238
MspI CCGG 2 cut(s) 354, 441
MspR9I CCNGG 1 cut(s) 714
MunI CAATTG 1 cut(s) 747
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeII GATC 2 cut(s) 154, 298
NlaIII CATG 7 cut(s) 131, 153, 226, 243, 269, 467, 701
NlaIV GGNNCC 2 cut(s) 162, 404
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 2 cut(s) 226, 243
PciSI GCTCTTC 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 712
PinAI ACCGGT 1 cut(s) 440
Ppu21I YACGTR 1 cut(s) 536
PsiI TTATAA 1 cut(s) 558
Psp1406I AACGTT 2 cut(s) 76, 85
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 162, 404
PspPI GGNCC 2 cut(s) 383, 710
PsyI GACNNNGTC 1 cut(s) 48
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 2 cut(s) 14, 238
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 2 cut(s) 570, 737
Sau3AI GATC 2 cut(s) 154, 298
Sau96I GGNCC 2 cut(s) 383, 710
ScrFI CCNGG 1 cut(s) 714
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 421
SinI GGWCC 2 cut(s) 383, 710
SmiMI CAYNNNNRTG 2 cut(s) 14, 238
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
SpeI ACTAGT 1 cut(s) 671
Sse9I AATT 4 cut(s) 227, 310, 652, 747
SsiI CCGC 1 cut(s) 400
SspI AATATT 1 cut(s) 456
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 1 cut(s) 712
TaiI ACGT 3 cut(s) 79, 88, 538
TaqI TCGA 3 cut(s) 140, 219, 308
TasI AATT 4 cut(s) 227, 310, 652, 747
Tru1I TTAA 2 cut(s) 570, 737
Tru9I TTAA 2 cut(s) 570, 737
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 6 cut(s) 116, 383, 587, 657, 708, 779
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 48
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 383, 710
XapI RAATTY 1 cut(s) 310
XceI RCATGY 2 cut(s) 226, 243
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 672
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.