Rw7G041110
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000469
Physical Location & Seq
Forward (+)
64048703 .. 64049942
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041110.1

Sequence Viewer

Length: 960 bp
ATGAACATCTATGATTATTGGTCTTCATACATAGACAAGGTTCCTTGCCATACATCGATATTATCTGGAGCTGAATATGTGCAAGAGTTGCTTAATGGACATCCAGATAGAATTTATAACTCATTTCGCATGGATAAACATGTATTTCAAAGGTTGTGTTGCACGCTTGAGAGTTTAAATTTATTAAAAGATGATCGGCATGTAGGCATTCAAGAGGCCGTGGCTATTTTCTTATATATAGTATCTCATAGTGAGCGCATGAGAATGGCTACTGAGCGCTTTCAAAGGTCAAAAGATACTATTCATCGACAATTTAAGCGTGTGTTAGCAGCATTGTGTAAGTTATCACCACAGATCATACGTGCTCAAAGTCAAGGAGAAACACCTCCAGAAATTTTGAACAATCCAAAGTTTTATCCATATTTCGAGAAATGTATTGGGGCAATTGATGGAACACATGTCGCTGCATGGGCCCCGGCTCAGAAACAAACTTCATATCGTGGTAGGAAGGACCTTGTTACCCAAAATGTCATGTGTGCATGCTCCTTTGACATGATGGTCTTTGCAGATGCAGTGACCAGGCCAGAGAATAAATTTCCATTTCCAAATGAAGGATATTATTATGTGGTGGATGCTGGGTATACAAACATGCCAGGATTCTTAGCTCCTTATCGAGGTGAGAGGTATCATTTGCGTGATTACAGAGGACCTCGTCGTACACCAAGAGGCCCTAGGGAGTTGTTCAATTACAGACATTCTTCATTGCGAAATGTGATTGAGCGATTTTTGGTAAGACAACGACGTATCCCTATTGCATGTTGTGTTTTACACAATTTTATTCGGAAGGAAGCTCGTCGCGACAGATTGTTTGAAGCTTTTGATGTAGAAGATATGATTTTTGAGGAGGAAAACAGTACACCATTGAACTTAGATATGTCACAAGAGAACCTGCACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

319

Amino Acids

37.53

Weight (kDa)

8.88

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 18 - 114 3.8e-40 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AasI GACNNNNNNGTC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 641
AccII CGCG 1 cut(s) 858
AcsI RAATTY 4 cut(s) 111, 178, 393, 593
AfaI GTAC 2 cut(s) 718, 916
AfeI AGCGCT 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 611, 674
AflIII ACRYGT 2 cut(s) 139, 457
AgsI TTSAA 7 cut(s) 149, 212, 284, 400, 745, 872, 925
AjnI CCWGG 2 cut(s) 578, 652
AluBI AGCT 4 cut(s) 71, 665, 851, 875
AluI AGCT 4 cut(s) 71, 665, 851, 875
Alw21I GWGCWC 1 cut(s) 367
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 4 cut(s) 216, 471, 581, 727
ApaI GGGCCC 1 cut(s) 475
ApeKI GCWGC 2 cut(s) 329, 464
ApoI RAATTY 4 cut(s) 111, 178, 393, 593
ArsI GACNNNNNNTTYG 2 cut(s) 851, 883
AspA2I CCTAGG 1 cut(s) 731
AspLEI GCGC 2 cut(s) 258, 279
AspS9I GGNCC 5 cut(s) 471, 472, 511, 707, 728
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 339, 689
AvaII GGWCC 2 cut(s) 511, 707
AvrII CCTAGG 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 341, 451
BccI CCATC 2 cut(s) 443, 550
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 580, 654
BciVI GTATCC 1 cut(s) 815
BcnI CCSGG 1 cut(s) 476
BfaI CTAG 1 cut(s) 732
BfoI RGCGCY 1 cut(s) 280
BfuI GTATCC 1 cut(s) 815
BisI GCNGC 2 cut(s) 330, 465
BlnI CCTAGG 1 cut(s) 731
BlsI GCNGC 2 cut(s) 331, 466
Bme1390I CCNGG 3 cut(s) 476, 580, 654
Bme18I GGWCC 2 cut(s) 511, 707
BmgT120I GGNCC 5 cut(s) 471, 472, 511, 707, 728
BmiI GGNNCC 3 cut(s) 42, 473, 474
BmrFI CCNGG 3 cut(s) 476, 580, 654
BmsI GCATC 2 cut(s) 559, 622
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 2 cut(s) 87, 372
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 219, 474, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 611, 674
Bse3DI GCAATG 1 cut(s) 761
BseBI CCWGG 2 cut(s) 580, 654
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 219, 474, 731
BseGI GGATG 2 cut(s) 100, 637
BseLI CCNNNNNNNGG 2 cut(s) 611, 674
BseMI GCAATG 1 cut(s) 761
BseMII CTCAG 2 cut(s) 264, 494
BseRI GAGGAG 1 cut(s) 917
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 2 cut(s) 341, 451
BseYI CCCAGC 1 cut(s) 635
BsgI GTGCAG 1 cut(s) 935
Bsh1236I CGCG 1 cut(s) 858
BshFI GGCC 4 cut(s) 218, 473, 583, 729
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 476
BslI CCNNNNNNNGG 2 cut(s) 611, 674
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 4 cut(s) 218, 473, 583, 729
Bsp120I GGGCCC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 367, 475
Bsp143I GATC 2 cut(s) 193, 354
Bsp68I TCGCGA 1 cut(s) 858
BspANI GGCC 4 cut(s) 218, 473, 583, 729
BspCNI CTCAG 2 cut(s) 265, 493
BspDI ATCGAT 1 cut(s) 56
BspFNI CGCG 1 cut(s) 858
BspLI GGNNCC 3 cut(s) 42, 473, 474
BsrDI GCAATG 1 cut(s) 761
BssECI CCNNGG 3 cut(s) 219, 474, 731
BssMI GATC 2 cut(s) 193, 354
BssNAI GTATAC 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 731
Bst1107I GTATAC 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 580, 654
Bst4CI ACNGT 1 cut(s) 914
BstAPI GCANNNNNTGC 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 164, 541
BstDEI CTNAG 4 cut(s) 273, 480, 661, 928
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 100, 637
BstFNI CGCG 1 cut(s) 858
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 2 cut(s) 258, 279
BstKTI GATC 2 cut(s) 196, 357
BstMBI GATC 2 cut(s) 193, 354
BstMWI GCNNNNNNNGC 2 cut(s) 88, 470
BstNI CCWGG 2 cut(s) 580, 654
BstNSI RCATGY 6 cut(s) 143, 203, 461, 543, 652, 819
BstSCI CCNGG 3 cut(s) 474, 578, 652
BstSLI GKGCMC 1 cut(s) 475
BstUI CGCG 1 cut(s) 858
BstV1I GCAGC 2 cut(s) 341, 451
BstV2I GAAGAC 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 642
Bsu15I ATCGAT 1 cut(s) 56
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 4 cut(s) 218, 473, 583, 729
BsuTUI ATCGAT 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 100, 637
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
BtuMI TCGCGA 1 cut(s) 858
Cac8I GCNNGC 2 cut(s) 164, 541
CfoI GCGC 2 cut(s) 258, 279
Cfr13I GGNCC 5 cut(s) 471, 472, 511, 707, 728
ClaI ATCGAT 1 cut(s) 56
Csp6I GTAC 2 cut(s) 717, 915
CviQI GTAC 2 cut(s) 717, 915
DdeI CTNAG 4 cut(s) 273, 480, 661, 928
DpnI GATC 2 cut(s) 195, 356
DpnII GATC 2 cut(s) 193, 354
DraI TTTAAA 1 cut(s) 177
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 731
Eco24I GRGCYC 1 cut(s) 475
Eco47I GGWCC 2 cut(s) 511, 707
Eco47III AGCGCT 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 672
EcoO109I RGGNCCY 4 cut(s) 472, 511, 707, 728
EcoRII CCWGG 2 cut(s) 578, 652
EcoT14I CCWWGG 1 cut(s) 731
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 731
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 2 cut(s) 330, 465
FokI GGATG 2 cut(s) 87, 644
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 330, 465
FspBI CTAG 1 cut(s) 732
GlaI GCGC 2 cut(s) 257, 278
GluI GCNGC 2 cut(s) 330, 465
GsaI CCCAGC 1 cut(s) 639
GsuI CTGGAG 2 cut(s) 87, 372
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 4 cut(s) 218, 473, 583, 729
HapII CCGG 1 cut(s) 476
HhaI GCGC 2 cut(s) 258, 279
Hin6I GCGC 2 cut(s) 256, 277
HinP1I GCGC 2 cut(s) 256, 277
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 1 cut(s) 657
HpaII CCGG 1 cut(s) 476
HphI GGTGA 2 cut(s) 339, 689
Hpy166II GTNNAC 3 cut(s) 642, 719, 917
Hpy188I TCNGA 2 cut(s) 483, 843
Hpy188III TCNNGA 6 cut(s) 66, 104, 212, 389, 427, 857
Hpy8I GTNNAC 3 cut(s) 642, 719, 917
Hpy99I CGWCG 3 cut(s) 717, 804, 858
HpyAV CCTTC 3 cut(s) 502, 605, 838
HpyCH4III ACNGT 1 cut(s) 914
HpyCH4IV ACGT 2 cut(s) 361, 802
HpyCH4V TGCA 8 cut(s) 82, 162, 467, 539, 566, 572, 815, 952
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 470
HpyF3I CTNAG 4 cut(s) 273, 480, 661, 928
HpySE526I ACGT 2 cut(s) 361, 802
HspAI GCGC 2 cut(s) 256, 277
Kzo9I GATC 2 cut(s) 193, 354
LmnI GCTCC 3 cut(s) 68, 548, 670
Lsp1109I GCAGC 2 cut(s) 341, 451
LweI GCATC 2 cut(s) 559, 622
MaeI CTAG 1 cut(s) 732
MaeII ACGT 2 cut(s) 361, 802
MaeIII GTNAC 3 cut(s) 517, 574, 936
MalI GATC 2 cut(s) 195, 356
MboI GATC 2 cut(s) 193, 354
MboII GAAGA 3 cut(s) 15, 750, 899
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 2 cut(s) 367, 475
MluCI AATT 8 cut(s) 111, 178, 311, 393, 444, 593, 745, 832
MnlI CCTC 9 cut(s) 208, 396, 668, 675, 698, 719, 720, 895, 898
MseI TTAA 4 cut(s) 93, 176, 185, 315
MslI CAYNNNNRTG 2 cut(s) 263, 693
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 3 cut(s) 476, 580, 654
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 2 cut(s) 580, 654
MvnI CGCG 1 cut(s) 858
MwoI GCNNNNNNNGC 2 cut(s) 88, 470
NciI CCSGG 1 cut(s) 476
NdeII GATC 2 cut(s) 193, 354
NlaIV GGNNCC 3 cut(s) 42, 473, 474
NmuCI GTSAC 2 cut(s) 574, 936
NruI TCGCGA 1 cut(s) 858
NspI RCATGY 6 cut(s) 143, 203, 461, 543, 652, 819
PaeI GCATGC 1 cut(s) 543
PciI ACATGT 2 cut(s) 139, 457
PctI GAATGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 657
PflFI GACNNNGTC 1 cut(s) 711
PkrI GCNGC 2 cut(s) 331, 466
Ppu21I YACGTR 1 cut(s) 362
PpuMI RGGWCCY 2 cut(s) 511, 707
PscI ACATGT 2 cut(s) 139, 457
PsiI TTATAA 1 cut(s) 117
Psp5II RGGWCCY 2 cut(s) 511, 707
Psp6I CCWGG 2 cut(s) 578, 652
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 2 cut(s) 578, 652
PspN4I GGNNCC 3 cut(s) 42, 473, 474
PspOMI GGGCCC 1 cut(s) 471
PspPI GGNCC 5 cut(s) 471, 472, 511, 707, 728
PspPPI RGGWCCY 2 cut(s) 511, 707
PsyI GACNNNGTC 1 cut(s) 711
RruI TCGCGA 1 cut(s) 858
RsaI GTAC 2 cut(s) 718, 916
RsaNI GTAC 2 cut(s) 717, 915
RseI CAYNNNNRTG 2 cut(s) 263, 693
SaqAI TTAA 4 cut(s) 93, 176, 185, 315
SatI GCNGC 2 cut(s) 330, 465
Sau3AI GATC 2 cut(s) 193, 354
Sau96I GGNCC 5 cut(s) 471, 472, 511, 707, 728
ScrFI CCNGG 3 cut(s) 476, 580, 654
SduI GDGCHC 2 cut(s) 367, 475
SfaNI GCATC 2 cut(s) 559, 622
SinI GGWCC 2 cut(s) 511, 707
SmiMI CAYNNNNRTG 2 cut(s) 263, 693
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SphI GCATGC 1 cut(s) 543
Sse9I AATT 8 cut(s) 111, 178, 311, 393, 444, 593, 745, 832
SspMI CTAG 1 cut(s) 732
StyD4I CCNGG 3 cut(s) 474, 578, 652
StyI CCWWGG 1 cut(s) 731
TaaI ACNGT 1 cut(s) 914
TaiI ACGT 2 cut(s) 364, 805
TaqI TCGA 4 cut(s) 56, 307, 426, 673
TasI AATT 8 cut(s) 111, 178, 311, 393, 444, 593, 745, 832
TatI WGTACW 1 cut(s) 914
TfiI GAWTC 1 cut(s) 657
Tru1I TTAA 4 cut(s) 93, 176, 185, 315
Tru9I TTAA 4 cut(s) 93, 176, 185, 315
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 2 cut(s) 574, 936
TseI GCWGC 2 cut(s) 329, 464
Tsp45I GTSAC 2 cut(s) 574, 936
TspDTI ATGAA 6 cut(s) 15, 17, 293, 483, 624, 750
TspRI CASTG 1 cut(s) 579
Tth111I GACNNNGTC 1 cut(s) 711
VpaK11BI GGWCC 2 cut(s) 511, 707
XagI CCTNNNNNAGG 1 cut(s) 672
XapI RAATTY 4 cut(s) 111, 178, 393, 593
XceI RCATGY 6 cut(s) 143, 203, 461, 543, 652, 819
XmaJI CCTAGG 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.