MD06G1090500.v1.1
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000469
Physical Location & Seq
Forward (+)
21930094 .. 21934133
4040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1090500.v1.1.491

Sequence Viewer

Length: 399 bp
ATGTTTACGATGAACAAAGATGTCTTTTATAGATTATCCAATGACTTGCAAACTAATTATGGATTGAAAGGTTCAAGGAGAATGTATGCAACTGAAATATTAGGAATGTTCTTGCATATGTTAGGACATGGTGTGAAAAATATATTAGCGCAAAAGAGATTTCAACATTCTAGTGAGACTGTTAGTAGATATTTTGGTGCTATGTTAGATATCGTATATAAGATGGCAATAGATATTATCAAACCGATGGATTCGGAATTTCGTGGCATTCCCCAAGAAATAAGGAGAGATGCAAGATACATGTCTCATTTTAAGGATTGTATTGGTGCCATAGATGGAGTACATGTTGAGGCTTCAATACCACCTTCGGATCAAGTTACATACATTAGTAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

133

Amino Acids

15.26

Weight (kDa)

9.27

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 1 - 73 1.7e-24 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 342
AflIII ACRYGT 2 cut(s) 300, 343
AgsI TTSAA 4 cut(s) 67, 75, 164, 357
Alw26I GTCTC 2 cut(s) 170, 309
AlwI GGATC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 326
BccI CCATC 3 cut(s) 217, 241, 329
BcoDI GTCTC 2 cut(s) 170, 309
BfaI CTAG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 328
BmsI GCATC 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
BshNI GGYRCC 1 cut(s) 326
BsmAI GTCTC 2 cut(s) 170, 309
BsmI GAATGC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 326
BssMI GATC 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 181
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 170, 309
BstMBI GATC 1 cut(s) 370
BstNSI RCATGY 2 cut(s) 304, 347
CfoI GCGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 341
CviAII CATG 3 cut(s) 128, 301, 344
CviJI RGCY 1 cut(s) 353
CviKI_1 RGCY 1 cut(s) 353
CviQI GTAC 1 cut(s) 341
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eco32I GATATC 1 cut(s) 211
EcoRV GATATC 1 cut(s) 211
FaeI CATG 3 cut(s) 131, 304, 347
FatI CATG 3 cut(s) 127, 300, 343
FauNDI CATATG 1 cut(s) 117
FspBI CTAG 1 cut(s) 171
GlaI GCGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 151
Hin1II CATG 3 cut(s) 131, 304, 347
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 256, 370
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 4 cut(s) 49, 89, 115, 293
Hsp92II CATG 3 cut(s) 131, 304, 347
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 370
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MluCI AATT 2 cut(s) 55, 257
MnlI CCTC 1 cut(s) 343
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 267
NdeI CATATG 1 cut(s) 117
NdeII GATC 1 cut(s) 370
NlaIII CATG 3 cut(s) 131, 304, 347
NlaIV GGNNCC 1 cut(s) 328
NspI RCATGY 2 cut(s) 304, 347
PciI ACATGT 2 cut(s) 300, 343
PctI GAATGC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 251
PscI ACATGT 2 cut(s) 300, 343
PspN4I GGNNCC 1 cut(s) 328
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 1 cut(s) 370
SetI ASST 2 cut(s) 73, 367
SfaNI GCATC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 2 cut(s) 55, 257
SspI AATATT 1 cut(s) 99
SspMI CTAG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 181
TasI AATT 2 cut(s) 55, 257
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 26
XapI RAATTY 1 cut(s) 257
XceI RCATGY 2 cut(s) 304, 347
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.