Rmu_sc0009438.1_g000007
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009438.1
OG0000469
Physical Location & Seq
Reverse (-)
46639 .. 47064
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009438.1_g000007.1.cds

Sequence Viewer

Length: 426 bp
atgccaggattcttagctccttatcgaggtgagcggtatcatttgcgtgattatagaggacctcgtcgtacaccgagaggccctagggagttgttcaattacagacattcttcattgcgaaatgtaattgagcgatgttttggtgtactgaaagcgcgttttccaattttaaaatatatgcctaattatcctccaagaaggcaacgacgtatacctattgcatgttgtgttttacacaattttattctgaaggaagctcgtcgcgacagattgtttgaagcttttgatgtagaagatatgatttttgaggaggaaaacagtacactggctaacttagatatgtcacaagagaaccttgcacagatgactaatgttagaaatgaaattgcagaagacttgtggcaagattttatccctcacccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

141

Amino Acids

16.97

Weight (kDa)

9.18

Isoelectric Point (pI)

64.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 211
AccII CGCG 2 cut(s) 157, 264
AciI CCGC 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 3 cut(s) 70, 147, 322
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 97, 278
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 3 cut(s) 17, 257, 281
AluI AGCT 3 cut(s) 17, 257, 281
AoxI GGCC 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 59, 80
AsuHPI GGTGA 2 cut(s) 41, 410
AvaII GGWCC 1 cut(s) 59
AvrII CCTAGG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 6
BfaI CTAG 1 cut(s) 84
BlnI CCTAGG 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 59, 80
BmrFI CCNGG 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 323
Bsh1236I CGCG 2 cut(s) 157, 264
BshFI GGCC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 81
Bsp68I TCGCGA 1 cut(s) 264
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 81
BspFNI CGCG 2 cut(s) 157, 264
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 83
BssNAI GTATAC 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 83
Bst1107I GTATAC 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 13, 334, 423
BstENI CCTNNNNNAGG 1 cut(s) 24
BstFNI CGCG 2 cut(s) 157, 264
BstHHI GCGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 2 cut(s) 157, 264
BstV2I GAAGAC 1 cut(s) 399
BstZ17I GTATAC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 323
BtuMI TCGCGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 59, 80
Csp6I GTAC 3 cut(s) 69, 146, 321
CviAII CATG 1 cut(s) 222
CviJI RGCY 5 cut(s) 17, 81, 257, 281, 329
CviKI_1 RGCY 5 cut(s) 17, 81, 257, 281, 329
CviQI GTAC 3 cut(s) 69, 146, 321
DdeI CTNAG 3 cut(s) 13, 334, 423
DraI TTTAAA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoO109I RGGNCCY 2 cut(s) 59, 80
EcoRII CCWGG 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 1 cut(s) 225
FaiI YATR 7 cut(s) 54, 177, 179, 212, 223, 299, 341
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 1 cut(s) 221
FblI GTMKAC 1 cut(s) 211
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 81
HhaI GCGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 225
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 1 cut(s) 9
HphI GGTGA 2 cut(s) 41, 410
Hpy166II GTNNAC 4 cut(s) 71, 146, 212, 323
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 4 cut(s) 71, 146, 212, 323
Hpy99I CGWCG 3 cut(s) 69, 210, 264
HpyAV CCTTC 2 cut(s) 192, 244
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 221, 359, 389
HpyF3I CTNAG 3 cut(s) 13, 334, 423
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 1 cut(s) 225
HspAI GCGC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 2 cut(s) 18, 311
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 342
MbiI CCGCTC 1 cut(s) 34
MboII GAAGA 3 cut(s) 102, 305, 404
MluCI AATT 6 cut(s) 97, 126, 165, 184, 238, 384
MnlI CCTC 8 cut(s) 20, 50, 71, 72, 201, 301, 304, 426
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 2 cut(s) 157, 264
NlaIII CATG 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 342
NruI TCGCGA 1 cut(s) 264
NspI RCATGY 1 cut(s) 225
PfeI GAWTC 1 cut(s) 9
PflFI GACNNNGTC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspPI GGNCC 2 cut(s) 59, 80
PspPPI RGGWCCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 63
RruI TCGCGA 1 cut(s) 264
RsaI GTAC 3 cut(s) 70, 147, 322
RsaNI GTAC 3 cut(s) 69, 146, 321
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 170
Sau96I GGNCC 2 cut(s) 59, 80
ScrFI CCNGG 1 cut(s) 6
SetI ASST 8 cut(s) 19, 31, 64, 211, 217, 259, 283, 357
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 6 cut(s) 97, 126, 165, 184, 238, 384
SsiI CCGC 1 cut(s) 34
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 25
TasI AATT 6 cut(s) 97, 126, 165, 184, 238, 384
TatI WGTACW 2 cut(s) 145, 320
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 102, 396
TspRI CASTG 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 24
XceI RCATGY 1 cut(s) 225
XmaJI CCTAGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.