pycom07g13740
MYB Family

nuclease activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
15619604 .. 15619882
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13740.1

Sequence Viewer

Length: 279 bp
ATGCATTCTTCTCTTAGGAGCATCATTGAACGAACTTTTGGGGTATGGAAGAAAATATGGGCAATTTTAAGGGATATGCCTAATTACCCGTTCAATGAGCAAGTGAAGATTGTCATTGCTACAATGGCTCTTCATAACTACATACGGGGGTATTCTGAACGTGATCGTCATTTTGATGACCCCATGGACTATTGTGAAGAGAGCGATAGTAGTGATGATGATGATGAAGAATACCAAAATTATCAAGTTGAAGGATCCCATGAGATAGAAGCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.99

Weight (kDa)

4.53

Isoelectric Point (pI)

64.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 277
AclWI GGATC 2 cut(s) 249, 262
AgsI TTSAA 3 cut(s) 29, 94, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AlwI GGATC 2 cut(s) 249, 262
BamHI GGATCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 114
BsmI GAATGC 1 cut(s) 4
Bsp143I GATC 2 cut(s) 163, 254
Bsp19I CCATGG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 2 cut(s) 249, 262
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 163, 254
BssT1I CCWWGG 1 cut(s) 183
Bst6I CTCTTC 2 cut(s) 135, 192
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 183
BstKTI GATC 2 cut(s) 166, 257
BstMBI GATC 2 cut(s) 163, 254
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 183
CviAII CATG 2 cut(s) 184, 260
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 165, 256
DpnII GATC 2 cut(s) 163, 254
Eam1104I CTCTTC 2 cut(s) 135, 192
EarI CTCTTC 2 cut(s) 135, 192
Eco130I CCWWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 187, 263
FaiI YATR 8 cut(s) 46, 58, 77, 135, 143, 185, 261, 277
FatI CATG 2 cut(s) 183, 259
Hin1II CATG 2 cut(s) 187, 263
Hpy188I TCNGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 2 cut(s) 187, 263
Kzo9I GATC 2 cut(s) 163, 254
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 18
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 160
MalI GATC 2 cut(s) 165, 256
MboI GATC 2 cut(s) 163, 254
MboII GAAGA 5 cut(s) 61, 118, 122, 209, 239
MflI RGATCY 1 cut(s) 254
MluCI AATT 3 cut(s) 63, 82, 238
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 4
MwoI GCNNNNNNNGC 1 cut(s) 125
NcoI CCATGG 1 cut(s) 183
NdeII GATC 2 cut(s) 163, 254
NlaIII CATG 2 cut(s) 187, 263
NlaIV GGNNCC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 135
PctI GAATGC 1 cut(s) 4
PsiI TTATAA 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 68
Sau3AI GATC 2 cut(s) 163, 254
SetI ASST 1 cut(s) 163
SfaNI GCATC 1 cut(s) 30
SgeI CNNG 7 cut(s) 100, 113, 158, 173, 196, 257, 272
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 3 cut(s) 63, 82, 238
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 163
TasI AATT 3 cut(s) 63, 82, 238
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 122, 240
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.