FvH4_3g21471
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000469
Physical Location & Seq
Reverse (-)
14586564 .. 14595059
8496 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21471.t1

Sequence Viewer

Length: 2661 bp
ATGGGAAGAAAGAAGATTACTGGTGACAATTGCATTGAGATGATCAACCTTGAAAATGGGCAAAGTGGAACTAAATCAGCTACCTGGAATCCTCAAACCGTAGCTATATTTTGCGACTTGTGTATCAAAGAAGTTGGGAAAGGACAAAGGCCTGGTACTCACTTTAATAAAGAAGGATGGGCTAGCTTGGTTGCAAACTTTCATGCAGAGACTGGAAATAACTATGACAAATCACAATTGAAGAACAAGTGGGATTTACTAAAAAAAGAATGGAAATTATGGAAAGATCTGATTGGGAAGGAAACTGGCCTTGGTTGGAATCTCACTAAAAATATTGTTGATGCATCAGATGAATGGTGGAGGAATAAAATCCAGATAAATCCACAATATGCAAAATTGCGTATTCGAGGCATCAATCCTGATATGGAGGTAAAGTTGGATATGATGTTAAATGGCGCTGTAGCTACCGGTAAATATGCTTGGGCTCCTTCTTCTGATCTACCACCGCCTCAAAATGAGAAAGCTCCAAAGGACAACATTATTTCATTGGATGATAATCTTGATTATGAGGAGTTTGACCTCAATGAAAGTCCACAGTCAGCTCAAGTTACCAAAGAGACAGGAAATAAGCGAGCAAATGGTCAACTTGACACAGAAGGGCTAAAAGAGAAAAAGGCTAAAATGGGAGGTGCCGCAAAATTGTCCCTACAAATTAATCATCTTGTTGAGGTAGTTGAGGCTAGGAGTACCACAACGTCTGCATTGATAAAAGGTTCACAATCTACTAGTGTTTCTGAAGTAATGAAGGTAGTTGAAAGTTTGTCAGGGATAGAGATTGGTAGCCAATTGTGGTGGTTTGCAACCGAGTTATTTTGCTCCCAAGAGAAGAGGGAAATGTTTTCTGTTATGGATATGGACATTTTAGAGGAGGAGGAAGAGGAGATTAGTAGAATTGTCTGCATTTGTGCTTCTATGATAGAAATGTATCATGAAAAGTATATTCATAAGGTCCCTTGTATGAATTCTTTATACACTGGTAACATTTGGGTGATGGAATTACAATCAGGGAATGACACTCGTTGTCATAACATGTTCCGGATGAACAAAGATGTATTCTTTAAATTGTGTGATGATTTGAAGAATACTTATAAGGTGAAAGCGTCCCGGAGAATTAGTGTGGCTGAGAAGGTGGCAATGTTTTTGTACACTTTAGGAGGAGGTGAAGCAAACAAAAGTGTTCAAGAGCGATTTCAACACTCTGGTGAGATAGTTAGCAGATACTTCAATAAAATGCTCAATGTGATATGTGATGTCATGGCAAAAGATTTCATCAAGCCATCAGATCCCGAGTTCAAAAGCACTCCACCTGAAATACTTGGTGATTCTACATATATGCCTCACTTTAAGGATTGTATTGGAGCTATAGATGGCGTGCATTTTCATGCAACTATATCACCATCAGATCAAGTACCATACATTGGCAGAAAAGGAATACCGACTCAGAATATAATGGCAGTATGCAACTTTGACATGCAATTTACATTTGCATGTGCAGGTTGGGAAGGCACTGCCCACGATGCAAGAATATTCCAATCAGTAATTCACAATCCAGCTTTGAACTTTCCTAAGCCTCCAAGTGAAAAATACTATTTGGTGGATGCAGGATACCCACAAATGAAAGGGTATTTGGGACCATACAAGTGTCAAAGGTATCATCTTCCTGAATTTCGCAGAGGTGCTCAACCAACAAGTTATAAAGAATCCGACCAGCAATGGCAATACATGAGTGGGATAGCTTCCCTCTCTTTCAATTGTACATGTCGTGCTGATGGAGGTTGTCACACATGGTGTTTGGGGATCTTGGCTTCTGGGACAGTAGAGGGTGATGGCGGCTTTCAAGTCGCTGCGCTCGACATACGCTTCTCGAATCTACAGATGGATTCGTGGCAGCAGCAGTTGGCACTAGGATTGGTACCTTGTACAAGCGGAACATATATGATCTACATACAATCCAAGAGATATGGGGGATGGAGTTTGATCACACAAGAACAGGCAGTGAGTTTTGGGTTTCAGCTGCTGCAAGCTATGGAGATAAAGAATGTGATCGCTGAAAGTGATTGCTTGGCACATACTGCTGCATATGCTCTTAGTGCTATCATCCATGACATCAAAGGCACTCTCAGTGAAGTTAATGCTTTCACTCTGCAATACACCCTAAGGCAAGCCAACATGGTTGCACATAGACTAGCAGGTTTTGGCTTTGCAACAATGAGGCTAGTGATAACAATACTACCGCAGAATGCGCTGGACTACGCCAACATTCCGTACGCCAGAGTGGGTCCAAAACAGCCAGAGTGGGTCCAAAACAGGGCCGGAGGTTCTTGCCGCCAAGACGGCGACGGAGGAGTCGAGGTCAGAGGGCGGTTCTTCGAGGAATATAGTGATGGGGTCGGCACACGACGGAGTAACTTGGTCGATATTGATTCCGATAGAGACGCAGCGGAAACCAACTTCCGGCGAAGCTATGAGCTACTTGTTTGCGAAATTGGTTTTGCAATAATTGAGGCAAAAGGATTGGCTATGCAATACAGGTTTGTGATGGTGTGGGTTGCTTTGCTCTCGGGCTTATCGGAATTAGGAGAGTGCGAGACCAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

887

Amino Acids

99.42

Weight (kDa)

5.83

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 28 - 122 4.5e-24 Myb/SANT-like DNA-binding domain
DUF8040 PF26138 342 - 436 2.9e-36 Domain of unknown function (DUF8040)
DDE_Tnp_4 PF13359 475 - 584 7.5e-09 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1149, 1755
AasI GACNNNNNNGTC 1 cut(s) 2405
Acc36I ACCTGC 2 cut(s) 1544, 2240
Acc65I GGTACC 1 cut(s) 1972
AccB1I GGYRCC 2 cut(s) 689, 1972
AccB7I CCANNNNNTGG 1 cut(s) 1478
AccIII TCCGGA 1 cut(s) 1095
AciI CCGC 8 cut(s) 506, 693, 1890, 1986, 2294, 2386, 2422, 2501
AclWI GGATC 2 cut(s) 1337, 1865
AcsI RAATTY 2 cut(s) 1021, 1724
AcuI CTGAAG 1 cut(s) 816
AdeI CACNNNGTG 1 cut(s) 1848
AfaI GTAC 8 cut(s) 157, 748, 1205, 1470, 1816, 1974, 1981, 2327
AfiI CCNNNNNNNGG 3 cut(s) 1478, 2368, 2514
AflIII ACRYGT 3 cut(s) 1089, 1817, 2655
AgeI ACCGGT 1 cut(s) 467
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 2 cut(s) 83, 151
AjuI GAANNNNNNNTTGG 6 cut(s) 294, 326, 1584, 1616, 1670, 1702
AleI CACNNNNGTG 1 cut(s) 1260
Alw21I GWGCWC 1 cut(s) 1741
Alw26I GTCTC 4 cut(s) 203, 611, 2487, 2642
AlwI GGATC 2 cut(s) 1337, 1865
AlwNI CAGNNNCTG 2 cut(s) 212, 2077
Ama87I CYCGRG 2 cut(s) 1346, 2620
Aor13HI TCCGGA 1 cut(s) 1095
AoxI GGCC 3 cut(s) 149, 307, 2370
ApeKI GCWGC 7 cut(s) 1904, 1948, 1951, 2074, 2077, 2135, 2498
ApoI RAATTY 2 cut(s) 1021, 1724
AseI ATTAAT 1 cut(s) 714
AsiGI ACCGGT 1 cut(s) 467
Asp718I GGTACC 1 cut(s) 1972
AspLEI GCGC 3 cut(s) 458, 1909, 2305
AspS9I GGNCC 5 cut(s) 1009, 1691, 2339, 2359, 2370
AsuC2I CCSGG 1 cut(s) 1165
AsuHPI GGTGA 8 cut(s) 35, 1060, 1165, 1232, 1274, 1391, 1446, 1895
AsuNHI GCTAGC 1 cut(s) 182
AvaI CYCGRG 2 cut(s) 1346, 2620
AvaII GGWCC 4 cut(s) 1009, 1691, 2339, 2359
AxyI CCTNAGG 1 cut(s) 2216
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BanI GGYRCC 2 cut(s) 689, 1972
BanII GRGCYC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 1741
BbvI GCAGC 7 cut(s) 1891, 1960, 1963, 2061, 2064, 2122, 2510
BceAI ACGGC 1 cut(s) 2410
BciT130I CCWGG 2 cut(s) 85, 153
BciVI GTATCC 1 cut(s) 1658
BclI TGATCA 2 cut(s) 42, 2037
BcnI CCSGG 1 cut(s) 1165
BcoDI GTCTC 4 cut(s) 203, 611, 2487, 2642
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 6 cut(s) 183, 741, 786, 1964, 2246, 2276
BfmI CTRYAG 3 cut(s) 459, 1422, 1931
BfoI RGCGCY 1 cut(s) 459
BfuAI ACCTGC 2 cut(s) 1544, 2240
BfuI GTATCC 1 cut(s) 1658
BglI GCCNNNNNGGC 1 cut(s) 2394
BglII AGATCT 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 85, 153, 1165
Bme18I GGWCC 4 cut(s) 1009, 1691, 2339, 2359
BmeT110I CYCGRG 2 cut(s) 1346, 2620
BmgT120I GGNCC 5 cut(s) 1009, 1691, 2339, 2359, 2370
BmiI GGNNCC 7 cut(s) 486, 691, 1011, 1692, 1974, 2340, 2360
BmrFI CCNGG 3 cut(s) 85, 153, 1165
BmsI GCATC 5 cut(s) 331, 353, 420, 1567, 1648
BmtI GCTAGC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 1626
BpuEI CTTGAG 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 1165
BsaBI GATNNNNATC 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 2642
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 2 cut(s) 467, 1095
BsaXI ACNNNNNCTCC 6 cut(s) 419, 449, 1159, 1189, 2397, 2427
Bsc4I CCNNNNNNNGG 3 cut(s) 1478, 2368, 2514
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 4 cut(s) 25, 217, 310, 1039
Bse21I CCTNAGG 1 cut(s) 2216
Bse3DI GCAATG 2 cut(s) 1200, 1778
Bse8I GATNNNNATC 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 1095
BseBI CCWGG 2 cut(s) 85, 153
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 6 cut(s) 182, 556, 1104, 1663, 2033, 2157
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 3 cut(s) 1478, 2368, 2514
BseMI GCAATG 2 cut(s) 1200, 1778
BseMII CTCAG 3 cut(s) 1173, 1514, 2194
BseNI ACTGG 4 cut(s) 25, 217, 310, 1039
BseRI GAGGAG 6 cut(s) 584, 941, 944, 953, 1230, 2418
BseXI GCAGC 7 cut(s) 1891, 1960, 1963, 2061, 2064, 2122, 2510
BsgI GTGCAG 1 cut(s) 1572
BshFI GGCC 3 cut(s) 151, 309, 2372
BshNI GGYRCC 2 cut(s) 689, 1972
BshTI ACCGGT 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 1741
BsiHKCI CYCGRG 2 cut(s) 1346, 2620
BsiSI CCGG 5 cut(s) 468, 1096, 1165, 2373, 2515
BsiWI CGTACG 1 cut(s) 2325
BslFI GGGAC 5 cut(s) 688, 995, 1147, 1704, 1885
BslI CCNNNNNNNGG 3 cut(s) 1478, 2368, 2514
BsmAI GTCTC 4 cut(s) 203, 611, 2487, 2642
BsmBI CGTCTC 1 cut(s) 2487
BsmFI GGGAC 5 cut(s) 688, 995, 1147, 1704, 1885
BsmI GAATGC 1 cut(s) 2305
BsnI GGCC 3 cut(s) 151, 309, 2372
Bso31I GGTCTC 1 cut(s) 2642
BsoBI CYCGRG 2 cut(s) 1346, 2620
Bsp1286I GDGCHC 2 cut(s) 487, 1741
Bsp13I TCCGGA 1 cut(s) 1095
Bsp1407I TGTACA 3 cut(s) 1203, 1814, 1979
Bsp143I GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
BspACI CCGC 8 cut(s) 506, 693, 1890, 1986, 2294, 2386, 2422, 2501
BspANI GGCC 3 cut(s) 151, 309, 2372
BspCNI CTCAG 3 cut(s) 1174, 1513, 2193
BspEI TCCGGA 1 cut(s) 1095
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 7 cut(s) 486, 691, 1011, 1692, 1974, 2340, 2360
BspMI ACCTGC 2 cut(s) 1544, 2240
BspOI GCTAGC 1 cut(s) 186
BspPI GGATC 2 cut(s) 1337, 1865
BspT107I GGYRCC 2 cut(s) 689, 1972
BspTNI GGTCTC 1 cut(s) 2642
BsrDI GCAATG 2 cut(s) 1200, 1778
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 3 cut(s) 1203, 1814, 1979
BsrI ACTGG 4 cut(s) 25, 217, 310, 1039
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 85, 153
Bst4CI ACNGT 3 cut(s) 100, 597, 1876
Bst6I CTCTTC 2 cut(s) 881, 930
BstAPI GCANNNNNTGC 1 cut(s) 2132
BstAUI TGTACA 3 cut(s) 1203, 1814, 1979
BstC8I GCNNGC 5 cut(s) 184, 633, 1433, 2082, 2223
BstDEI CTNAG 6 cut(s) 1182, 1500, 1626, 2147, 2180, 2216
BstF5I GGATG 6 cut(s) 182, 556, 1104, 1663, 2033, 2157
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 3 cut(s) 458, 1909, 2305
BstKTI GATC 9 cut(s) 45, 289, 499, 1345, 1465, 1860, 2001, 2040, 2106
BstMAI GTCTC 4 cut(s) 203, 611, 2487, 2642
BstMBI GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
BstMWI GCNNNNNNNGC 6 cut(s) 1577, 2132, 2141, 2150, 2302, 2394
BstNI CCWGG 2 cut(s) 85, 153
BstNSI RCATGY 5 cut(s) 1093, 1534, 1551, 1821, 2659
BstSCI CCNGG 3 cut(s) 83, 151, 1163
BstSFI CTRYAG 3 cut(s) 459, 1422, 1931
BstV1I GCAGC 7 cut(s) 1891, 1960, 1963, 2061, 2064, 2122, 2510
BstX2I RGATCY 3 cut(s) 286, 1342, 1857
BstYI RGATCY 3 cut(s) 286, 1342, 1857
Bsu36I CCTNAGG 1 cut(s) 2216
BsuI GTATCC 1 cut(s) 1658
BsuRI GGCC 3 cut(s) 151, 309, 2372
BtsCI GGATG 6 cut(s) 182, 556, 1104, 1663, 2033, 2157
BtsI GCAGTG 2 cut(s) 1566, 2061
BtsIMutI CAGTG 4 cut(s) 1032, 1566, 2061, 2188
BveI ACCTGC 2 cut(s) 1544, 2240
Cac8I GCNNGC 5 cut(s) 184, 633, 1433, 2082, 2223
CaiI CAGNNNCTG 2 cut(s) 212, 2077
CciI TCATGA 1 cut(s) 988
CfoI GCGC 3 cut(s) 458, 1909, 2305
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 5 cut(s) 1009, 1691, 2339, 2359, 2370
CseI GACGC 2 cut(s) 1149, 2504
Csp6I GTAC 8 cut(s) 156, 747, 1204, 1469, 1815, 1973, 1980, 2326
CspAI ACCGGT 1 cut(s) 467
CspCI CAANNNNNGTGG 2 cut(s) 833, 868
CviQI GTAC 8 cut(s) 156, 747, 1204, 1469, 1815, 1973, 1980, 2326
DdeI CTNAG 6 cut(s) 1182, 1500, 1626, 2147, 2180, 2216
DpnI GATC 9 cut(s) 44, 288, 498, 1344, 1464, 1859, 2000, 2039, 2105
DpnII GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
DraI TTTAAA 1 cut(s) 1120
DraIII CACNNNGTG 1 cut(s) 1848
DrdI GACNNNNNNGTC 1 cut(s) 2405
DseDI GACNNNNNNGTC 1 cut(s) 2405
Eam1104I CTCTTC 2 cut(s) 881, 930
EarI CTCTTC 2 cut(s) 881, 930
Eco130I CCWWGG 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 2642
Eco47I GGWCC 4 cut(s) 1009, 1691, 2339, 2359
Eco57I CTGAAG 1 cut(s) 816
Eco81I CCTNAGG 1 cut(s) 2216
Eco88I CYCGRG 2 cut(s) 1346, 2620
EcoO109I RGGNCCY 1 cut(s) 1009
EcoRI GAATTC 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 83, 151
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 2487
FaqI GGGAC 5 cut(s) 688, 995, 1147, 1704, 1885
FauNDI CATATG 1 cut(s) 2140
FbaI TGATCA 2 cut(s) 42, 2037
FokI GGATG 6 cut(s) 189, 563, 1111, 1670, 2040, 2144
FriOI GRGCYC 1 cut(s) 487
FspBI CTAG 6 cut(s) 183, 741, 786, 1964, 2246, 2276
GlaI GCGC 3 cut(s) 457, 1908, 2304
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 3 cut(s) 151, 309, 2372
HapII CCGG 5 cut(s) 468, 1096, 1165, 2373, 2515
HgaI GACGC 2 cut(s) 1149, 2504
HhaI GCGC 3 cut(s) 458, 1909, 2305
Hin6I GCGC 3 cut(s) 456, 1907, 2303
HinP1I GCGC 3 cut(s) 456, 1907, 2303
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HinfI GANTC 9 cut(s) 88, 319, 1382, 1498, 1760, 1927, 1940, 2406, 2483
HpaII CCGG 5 cut(s) 468, 1096, 1165, 2373, 2515
HphI GGTGA 8 cut(s) 35, 1060, 1165, 1232, 1274, 1391, 1446, 1895
Hpy166II GTNNAC 4 cut(s) 593, 644, 776, 1206
Hpy188III TCNNGA 9 cut(s) 373, 419, 560, 989, 1096, 1241, 1346, 1721, 1924
Hpy8I GTNNAC 4 cut(s) 593, 644, 776, 1206
Hpy99I CGWCG 2 cut(s) 2402, 2463
HpyAV CCTTC 7 cut(s) 167, 292, 498, 650, 799, 1180, 1556
HpyCH4III ACNGT 3 cut(s) 100, 597, 1876
HpyCH4IV ACGT 1 cut(s) 755
HpyF10VI GCNNNNNNNGC 6 cut(s) 1577, 2132, 2141, 2150, 2302, 2394
HpyF3I CTNAG 6 cut(s) 1182, 1500, 1626, 2147, 2180, 2216
HpySE526I ACGT 1 cut(s) 755
HspAI GCGC 3 cut(s) 456, 1907, 2303
Kpn2I TCCGGA 1 cut(s) 1095
KpnI GGTACC 1 cut(s) 1976
Ksp22I TGATCA 2 cut(s) 42, 2037
Kzo9I GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
LmnI GCTCC 4 cut(s) 490, 529, 881, 1418
Lsp1109I GCAGC 7 cut(s) 1891, 1960, 1963, 2061, 2064, 2122, 2510
LweI GCATC 5 cut(s) 331, 353, 420, 1567, 1648
MaeI CTAG 6 cut(s) 183, 741, 786, 1964, 2246, 2276
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 5 cut(s) 23, 607, 1037, 1838, 2465
MalI GATC 9 cut(s) 44, 288, 498, 1344, 1464, 1859, 2000, 2039, 2105
MboI GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
MboII GAAGA 9 cut(s) 18, 25, 253, 483, 898, 947, 1150, 1709, 2419
MfeI CAATTG 4 cut(s) 28, 236, 845, 1810
MflI RGATCY 3 cut(s) 286, 1342, 1857
MhlI GDGCHC 2 cut(s) 487, 1741
MlyI GAGTC 2 cut(s) 1492, 2415
MmeI TCCRAC 3 cut(s) 296, 417, 1788
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 1095
MseI TTAA 6 cut(s) 165, 449, 714, 1119, 1404, 2190
MslI CAYNNNNRTG 6 cut(s) 38, 1046, 1260, 1440, 1546, 1699
MspA1I CMGCKG 2 cut(s) 2074, 2501
MspI CCGG 5 cut(s) 468, 1096, 1165, 2373, 2515
MspR9I CCNGG 3 cut(s) 85, 153, 1165
MunI CAATTG 4 cut(s) 28, 236, 845, 1810
Mva1269I GAATGC 1 cut(s) 2305
MvaI CCWGG 2 cut(s) 85, 153
MwoI GCNNNNNNNGC 6 cut(s) 1577, 2132, 2141, 2150, 2302, 2394
NciI CCSGG 1 cut(s) 1165
NdeI CATATG 1 cut(s) 2140
NdeII GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
NheI GCTAGC 1 cut(s) 182
NlaIV GGNNCC 7 cut(s) 486, 691, 1011, 1692, 1974, 2340, 2360
NmuCI GTSAC 2 cut(s) 23, 1838
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 5 cut(s) 1093, 1534, 1551, 1821, 2659
OliI CACNNNNGTG 1 cut(s) 1260
PagI TCATGA 1 cut(s) 988
PceI AGGCCT 1 cut(s) 151
PciI ACATGT 3 cut(s) 1089, 1817, 2655
PcsI WCGNNNNNNNCGW 2 cut(s) 1908, 2406
PctI GAATGC 1 cut(s) 2305
PfeI GAWTC 7 cut(s) 88, 319, 1382, 1760, 1927, 1940, 2483
Pfl23II CGTACG 1 cut(s) 2325
PflMI CCANNNNNTGG 1 cut(s) 1478
PfoI TCCNGGA 1 cut(s) 1163
PinAI ACCGGT 1 cut(s) 467
PleI GAGTC 2 cut(s) 1492, 2414
PpsI GAGTC 2 cut(s) 1492, 2414
PpuMI RGGWCCY 1 cut(s) 1009
PscI ACATGT 3 cut(s) 1089, 1817, 2655
PshBI ATTAAT 1 cut(s) 714
PsiI TTATAA 2 cut(s) 1149, 1755
Psp5II RGGWCCY 1 cut(s) 1009
Psp6I CCWGG 2 cut(s) 83, 151
PspGI CCWGG 2 cut(s) 83, 151
PspLI CGTACG 1 cut(s) 2325
PspN4I GGNNCC 7 cut(s) 486, 691, 1011, 1692, 1974, 2340, 2360
PspPI GGNCC 5 cut(s) 1009, 1691, 2339, 2359, 2370
PspPPI RGGWCCY 1 cut(s) 1009
PstNI CAGNNNCTG 2 cut(s) 212, 2077
PsuI RGATCY 3 cut(s) 286, 1342, 1857
PvuII CAGCTG 1 cut(s) 2074
RsaI GTAC 8 cut(s) 157, 748, 1205, 1470, 1816, 1974, 1981, 2327
RsaNI GTAC 8 cut(s) 156, 747, 1204, 1469, 1815, 1973, 1980, 2326
RseI CAYNNNNRTG 6 cut(s) 38, 1046, 1260, 1440, 1546, 1699
SaqAI TTAA 6 cut(s) 165, 449, 714, 1119, 1404, 2190
Sau3AI GATC 9 cut(s) 42, 286, 496, 1342, 1462, 1857, 1998, 2037, 2103
Sau96I GGNCC 5 cut(s) 1009, 1691, 2339, 2359, 2370
SchI GAGTC 2 cut(s) 1492, 2415
ScrFI CCNGG 3 cut(s) 85, 153, 1165
SduI GDGCHC 2 cut(s) 487, 1741
SfaNI GCATC 5 cut(s) 331, 353, 420, 1567, 1648
SfcI CTRYAG 3 cut(s) 459, 1422, 1931
SinI GGWCC 4 cut(s) 1009, 1691, 2339, 2359
SmiMI CAYNNNNRTG 6 cut(s) 38, 1046, 1260, 1440, 1546, 1699
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SpeI ACTAGT 1 cut(s) 785
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 8 cut(s) 506, 693, 1890, 1986, 2294, 2386, 2422, 2501
SspI AATATT 2 cut(s) 334, 1587
SspMI CTAG 6 cut(s) 183, 741, 786, 1964, 2246, 2276
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 83, 151, 1163
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 100, 597, 1876
TaiI ACGT 1 cut(s) 758
TaqI TCGA 6 cut(s) 406, 1911, 1925, 2409, 2430, 2475
TatI WGTACW 3 cut(s) 1203, 1814, 1979
TauI GCSGC 3 cut(s) 695, 1893, 2388
TfiI GAWTC 7 cut(s) 88, 319, 1382, 1760, 1927, 1940, 2483
Tru1I TTAA 6 cut(s) 165, 449, 714, 1119, 1404, 2190
Tru9I TTAA 6 cut(s) 165, 449, 714, 1119, 1404, 2190
TscAI CASTG 4 cut(s) 1039, 1573, 2061, 2188
TseFI GTSAC 2 cut(s) 23, 1838
TseI GCWGC 7 cut(s) 1904, 1948, 1951, 2074, 2077, 2135, 2498
Tsp45I GTSAC 2 cut(s) 23, 1838
TspGWI ACGGA 3 cut(s) 2313, 2415, 2476
TspRI CASTG 4 cut(s) 1039, 1573, 2061, 2188
Van91I CCANNNNNTGG 1 cut(s) 1478
VpaK11BI GGWCC 4 cut(s) 1009, 1691, 2339, 2359
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 2 cut(s) 1021, 1724
XceI RCATGY 5 cut(s) 1093, 1534, 1551, 1821, 2659
XspI CTAG 6 cut(s) 183, 741, 786, 1964, 2246, 2276
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.