Rw1G010350
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000469
Physical Location & Seq
Reverse (-)
23071615 .. 23072976
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010350.1

Sequence Viewer

Length: 1200 bp
ATGAACAATTCCGAAGTAGATGAAGTGGAGGAGGAGATATTCTTACGAAGTGTGCAATTTAATGCTCTGCTCATTCAACATTATTACATGAACTATGTTCATAAAACTCCTTGCATGGTATCTTCTCAAACAGGTAATAAATGGATAATGGAAGTATTACAAGGGAATGACAGTCGGTGTTACAATGCATTTAGAATGCAAAAGGAAGTATTTTATCGTTTATGTAGTGATTTGGAAGTTCAATTTGGGGTGTTGGGTTCAAACAGAACAAGTCATATTGAAGTTATGGGAATGCTATTGTGGTGCCTAGGACAGGGATGTGGAATTAGGTCAGTAGCAGAACGATTTCAATATTCTAATGAAACTGTTTCTAGATATTTAGGAAAAGCACTAGATCATGTGTGTAAACTAGGTAAACGTATAATGAGACCTTCGGAGAATGAATTTAATGGTGTTGCACCGGAGATCATGAGGGATAACAGATACATGCCTCATTTTAAGGATTGCGTCGGCGCTATCGACGGAGTCCATATTCCCACTTCTATAGCTCCTGAAAAACAAATACCGTACATTGGTAGAAAAGGAATACCAACACAAAATGTTATGGCGGCATGTAATTTCAATATGCAATTTATCTATGTATGTGCGGGATGGGAAGGGTCTGCTCATGATACGAGAGTGTTTCTATCGGTACTTCGAGATCCCGAAATGAATTTTCCTAAACCTCCACTAGGAAAATATTATGTTGTAGATTCCGGATACCCTCAAATGAATGGATTTTTGGGACCTTACAAAGGTCCGAGACAACATTTTCAACAATACCGTAGGCAAGAACCAAGAAATGAAAAAGAGGTATTTAACCAAGCACACTCTTCTCTTAGAGGCGTTATAGAACGCACATTTGGAGTTTGGAAAAAAAAGTGGAAGATTTTAAGGGACATGCAAGGTTATTCATTTGAAAAGCAAGTGAAGATTGTCATTGCTACCATGACACTTCATAATTATATACGGATACATGCACATGGTGATAGACATTTTGTCCGCAGTGAAGAAAGAGAAGGTTATGGGTCAAGTGGTGAGATAGAAATGGATGATGATGTACAAGAAGAATATCATGGTCACGGTGCACAAGAAATGGAAGCAATAAGAAATAGCATTACTCAAAGTTTGATGAATGCGCGTAATAACGTGAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

399

Amino Acids

46.18

Weight (kDa)

7.64

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 41 - 136 1.1e-28 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 166 - 333 2.2e-12 Transposase DDE domain
DDE_Tnp_4 PF13359 173 - 334 5.8e-23 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AccII CGCG 1 cut(s) 1180
AccIII TCCGGA 1 cut(s) 755
AciI CCGC 3 cut(s) 608, 647, 1042
AclWI GGATC 1 cut(s) 695
AcsI RAATTY 2 cut(s) 443, 712
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 3 cut(s) 569, 693, 1101
AfiI CCNNNNNNNGG 4 cut(s) 313, 572, 731, 794
AgsI TTSAA 8 cut(s) 77, 242, 261, 281, 350, 622, 815, 959
AhdI GACNNNNNGTC 1 cut(s) 1037
AjuI GAANNNNNNNTTGG 6 cut(s) 228, 260, 764, 796, 885, 917
AluBI AGCT 1 cut(s) 548
AluI AGCT 1 cut(s) 548
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 2 cut(s) 421, 796
Alw44I GTGCAC 1 cut(s) 1125
AlwI GGATC 1 cut(s) 695
Aor13HI TCCGGA 1 cut(s) 755
ApaLI GTGCAC 1 cut(s) 1125
ApoI RAATTY 2 cut(s) 443, 712
Asp700I GAANNNNTTC 1 cut(s) 345
AspA2I CCTAGG 1 cut(s) 307
AspLEI GCGC 2 cut(s) 515, 1180
AspS9I GGNCC 2 cut(s) 785, 797
AsuHPI GGTGA 2 cut(s) 1037, 1088
AvaII GGWCC 2 cut(s) 785, 797
AvrII CCTAGG 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 1129
BaeI ACNNNNGTAYC 2 cut(s) 663, 696
BanI GGYRCC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 1129
BccI CCATC 1 cut(s) 645
BciVI GTATCC 2 cut(s) 752, 1005
BcoDI GTCTC 2 cut(s) 421, 796
BfaI CTAG 5 cut(s) 308, 372, 392, 410, 731
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 516
BfuI GTATCC 2 cut(s) 752, 1005
BisI GCNGC 1 cut(s) 609
BlnI CCTAGG 1 cut(s) 307
BlsI GCNGC 1 cut(s) 610
Bme18I GGWCC 2 cut(s) 785, 797
BmeRI GACNNNNNGTC 1 cut(s) 1037
BmgT120I GGNCC 2 cut(s) 785, 797
BmiI GGNNCC 2 cut(s) 305, 786
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 307
BsaWI WCCGGW 2 cut(s) 460, 755
Bsc4I CCNNNNNNNGG 4 cut(s) 313, 572, 731, 794
Bse3DI GCAATG 1 cut(s) 978
BseAI TCCGGA 1 cut(s) 755
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 3 cut(s) 323, 656, 1096
BseLI CCNNNNNNNGG 4 cut(s) 313, 572, 731, 794
BseMI GCAATG 1 cut(s) 978
BseRI GAGGAG 2 cut(s) 44, 47
BseSI GKGCMC 1 cut(s) 1129
Bsh1236I CGCG 1 cut(s) 1180
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 1129
BsiSI CCGG 2 cut(s) 461, 756
BslFI GGGAC 2 cut(s) 798, 950
BslI CCNNNNNNNGG 4 cut(s) 313, 572, 731, 794
BsmAI GTCTC 2 cut(s) 421, 796
BsmFI GGGAC 2 cut(s) 798, 950
BsmI GAATGC 3 cut(s) 201, 297, 1180
Bso31I GGTCTC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 1129
Bsp13I TCCGGA 1 cut(s) 755
Bsp1407I TGTACA 1 cut(s) 1099
Bsp143I GATC 3 cut(s) 394, 465, 700
BspACI CCGC 3 cut(s) 608, 647, 1042
BspEI TCCGGA 1 cut(s) 755
BspFNI CGCG 1 cut(s) 1180
BspHI TCATGA 2 cut(s) 468, 667
BspLI GGNNCC 2 cut(s) 305, 786
BspPI GGATC 1 cut(s) 695
BspT107I GGYRCC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 978
BsrGI TGTACA 1 cut(s) 1099
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 3 cut(s) 394, 465, 700
BssT1I CCWWGG 1 cut(s) 307
Bst4CI ACNGT 5 cut(s) 173, 367, 567, 824, 1124
Bst6I CTCTTC 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 1099
BstDEI CTNAG 1 cut(s) 878
BstENI CCTNNNNNAGG 3 cut(s) 311, 729, 792
BstF5I GGATG 3 cut(s) 323, 656, 1096
BstFNI CGCG 1 cut(s) 1180
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 515, 1180
BstKTI GATC 3 cut(s) 397, 468, 703
BstMAI GTCTC 2 cut(s) 421, 796
BstMBI GATC 3 cut(s) 394, 465, 700
BstNSI RCATGY 4 cut(s) 490, 615, 943, 1019
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 1129
BstUI CGCG 1 cut(s) 1180
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BsuI GTATCC 2 cut(s) 752, 1005
BtsCI GGATG 3 cut(s) 323, 656, 1096
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 1 cut(s) 1051
CciI TCATGA 2 cut(s) 468, 667
CfoI GCGC 2 cut(s) 515, 1180
Cfr13I GGNCC 2 cut(s) 785, 797
CseI GACGC 1 cut(s) 496
Csp6I GTAC 3 cut(s) 568, 692, 1100
CviJI RGCY 1 cut(s) 548
CviKI_1 RGCY 1 cut(s) 548
CviQI GTAC 3 cut(s) 568, 692, 1100
DdeI CTNAG 1 cut(s) 878
DpnI GATC 3 cut(s) 396, 467, 702
DpnII GATC 3 cut(s) 394, 465, 700
DraIII CACNNNGTG 1 cut(s) 1025
DriI GACNNNNNGTC 1 cut(s) 1037
Eam1104I CTCTTC 1 cut(s) 877
Eam1105I GACNNNNNGTC 1 cut(s) 1037
EarI CTCTTC 1 cut(s) 877
Eco130I CCWWGG 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 785, 797
EcoNI CCTNNNNNAGG 3 cut(s) 311, 729, 792
EcoO109I RGGNCCY 1 cut(s) 785
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 307
FaqI GGGAC 2 cut(s) 798, 950
FauI CCCGC 1 cut(s) 640
Fnu4HI GCNGC 1 cut(s) 609
FokI GGATG 3 cut(s) 330, 663, 1103
Fsp4HI GCNGC 1 cut(s) 609
FspBI CTAG 5 cut(s) 308, 372, 392, 410, 731
GlaI GCGC 2 cut(s) 514, 1179
GluI GCNGC 1 cut(s) 609
HaeII RGCGCY 1 cut(s) 516
HapII CCGG 2 cut(s) 461, 756
HgaI GACGC 1 cut(s) 496
HhaI GCGC 2 cut(s) 515, 1180
Hin6I GCGC 2 cut(s) 513, 1178
HinP1I GCGC 2 cut(s) 513, 1178
HinfI GANTC 2 cut(s) 525, 752
HpaII CCGG 2 cut(s) 461, 756
HphI GGTGA 2 cut(s) 1037, 1088
Hpy166II GTNNAC 4 cut(s) 407, 416, 1127, 1192
Hpy188I TCNGA 3 cut(s) 13, 436, 801
Hpy188III TCNNGA 7 cut(s) 372, 469, 551, 668, 698, 704, 756
Hpy8I GTNNAC 4 cut(s) 407, 416, 1127, 1192
Hpy99I CGWCG 2 cut(s) 512, 524
HpyAV CCTTC 3 cut(s) 441, 650, 1052
HpyCH4III ACNGT 5 cut(s) 173, 367, 567, 824, 1124
HpyCH4IV ACGT 2 cut(s) 418, 1188
HpyCH4V TGCA 9 cut(s) 55, 114, 188, 199, 458, 628, 943, 1019, 1127
HpyF3I CTNAG 1 cut(s) 878
HpySE526I ACGT 2 cut(s) 418, 1188
HspAI GCGC 2 cut(s) 513, 1178
Kpn2I TCCGGA 1 cut(s) 755
Kzo9I GATC 3 cut(s) 394, 465, 700
LmnI GCTCC 1 cut(s) 553
LpnPI CCDG 5 cut(s) 117, 299, 474, 564, 769
MaeI CTAG 5 cut(s) 308, 372, 392, 410, 731
MaeII ACGT 2 cut(s) 418, 1188
MaeIII GTNAC 2 cut(s) 179, 1118
MalI GATC 3 cut(s) 396, 467, 702
MboI GATC 3 cut(s) 394, 465, 700
MboII GAAGA 6 cut(s) 114, 864, 937, 982, 1061, 1118
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 1129
MluCI AATT 9 cut(s) 7, 56, 242, 324, 443, 616, 629, 712, 1000
MlyI GAGTC 1 cut(s) 534
MnlI CCTC 8 cut(s) 22, 25, 465, 501, 735, 774, 844, 875
Mph1103I ATGCAT 1 cut(s) 190
MroI TCCGGA 1 cut(s) 755
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 5 cut(s) 60, 447, 498, 858, 932
MslI CAYNNNNRTG 1 cut(s) 1020
MspI CCGG 2 cut(s) 461, 756
Mva1269I GAATGC 3 cut(s) 201, 297, 1180
MvnI CGCG 1 cut(s) 1180
NdeII GATC 3 cut(s) 394, 465, 700
NlaIV GGNNCC 2 cut(s) 305, 786
NmuCI GTSAC 1 cut(s) 1118
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 4 cut(s) 490, 615, 943, 1019
PagI TCATGA 2 cut(s) 468, 667
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PctI GAATGC 3 cut(s) 201, 297, 1180
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 752
PflFI GACNNNGTC 1 cut(s) 524
PkrI GCNGC 1 cut(s) 610
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PpuMI RGGWCCY 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 785
PspN4I GGNNCC 2 cut(s) 305, 786
PspPI GGNCC 2 cut(s) 785, 797
PspPPI RGGWCCY 1 cut(s) 785
PsuI RGATCY 1 cut(s) 700
PsyI GACNNNGTC 1 cut(s) 524
RsaI GTAC 3 cut(s) 569, 693, 1101
RsaNI GTAC 3 cut(s) 568, 692, 1100
RseI CAYNNNNRTG 1 cut(s) 1020
SaqAI TTAA 5 cut(s) 60, 447, 498, 858, 932
SatI GCNGC 1 cut(s) 609
Sau3AI GATC 3 cut(s) 394, 465, 700
Sau96I GGNCC 2 cut(s) 785, 797
SchI GAGTC 1 cut(s) 534
SduI GDGCHC 1 cut(s) 1129
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 2 cut(s) 785, 797
SmiMI CAYNNNNRTG 1 cut(s) 1020
Sse9I AATT 9 cut(s) 7, 56, 242, 324, 443, 616, 629, 712, 1000
SsiI CCGC 3 cut(s) 608, 647, 1042
SspI AATATT 2 cut(s) 353, 740
SspMI CTAG 5 cut(s) 308, 372, 392, 410, 731
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 5 cut(s) 173, 367, 567, 824, 1124
TaiI ACGT 2 cut(s) 421, 1191
TaqI TCGA 2 cut(s) 519, 697
TasI AATT 9 cut(s) 7, 56, 242, 324, 443, 616, 629, 712, 1000
TatI WGTACW 1 cut(s) 1099
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 5 cut(s) 60, 447, 498, 858, 932
Tru9I TTAA 5 cut(s) 60, 447, 498, 858, 932
TscAI CASTG 1 cut(s) 1051
TseFI GTSAC 1 cut(s) 1118
Tsp45I GTSAC 1 cut(s) 1118
TspGWI ACGGA 2 cut(s) 537, 1024
TspRI CASTG 1 cut(s) 1051
Tth111I GACNNNGTC 1 cut(s) 524
VneI GTGCAC 1 cut(s) 1125
VpaK11BI GGWCC 2 cut(s) 785, 797
XagI CCTNNNNNAGG 3 cut(s) 311, 729, 792
XapI RAATTY 2 cut(s) 443, 712
XbaI TCTAGA 1 cut(s) 371
XceI RCATGY 4 cut(s) 490, 615, 943, 1019
XmaJI CCTAGG 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 5 cut(s) 308, 372, 392, 410, 731
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.