Rmu_sc0003526.1_g000015
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003526.1
OG0000469
Physical Location & Seq
Reverse (-)
93472 .. 95190
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003526.1_g000015.1.cds

Sequence Viewer

Length: 999 bp
atgagtatcgttgaaatgttggctatgtttctttatattttgggacaaggtcagactaataggagtacacaagaacgttttcaacattctggtgagacggttagtaggtattttgatataatgttagagattttctataatatggcaaaagtgctcataaatccaagggatccggaatttaggagcattccacaagaaattctcactgattcaagatacatgcctcattttaaggattgcattggtactatcgatggtgttcatgttcaagcttcgatatctccatgtgatcaggtgccatatattggaagaaaagggatacccacccaaaatgtattggctatatgcaacttcgacatgcaattcacatttgcatgtgcagggtgggaaggcaccgcccatgatagtagagtattcttatcagctctacgcaatcctcaatcgaattttcctaaacccccaaatggaaaatactatgtggtggatgccggatatccacaaatgaagggttatttaggaccatataaaggtgagcggtaccaccttccacatttccgtagagatgatgagccgaccggtcataaagaaatattcaatcatgcatattcttcacttagaggtgttattgagcgcacttttgggcctaccaagaatcacatcttcacacctgctcaacgagatattgattttgatgaaagtggaaattacgcaagtgaagagactagtgaagagatggaggataatgaacatgatggagatgtttaccaaacacctcagctgcttcctctcacagcaacttcggaagtgcttcctctcacagcaacttcggaagtgattcctctcacagcacagcaatcccaaactatgcctaatattcaaatcaagatctacgggagtatcccccaaagtcagactaattgcccgccgcaggcccacgaacttgaaggcccctcaaacctgctggccacaaactggtatgagtttagacttgaacgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

332

Amino Acids

37.79

Weight (kDa)

5.21

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 676
Acc36I ACCTGC 2 cut(s) 676, 966
Acc65I GGTACC 1 cut(s) 537
AccB1I GGYRCC 3 cut(s) 295, 392, 537
AccB7I CCANNNNNTGG 2 cut(s) 305, 972
AccBSI CCGCTC 1 cut(s) 535
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 4 cut(s) 396, 535, 923, 926
AclI AACGTT 1 cut(s) 76
AclWI GGATC 2 cut(s) 164, 177
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 3 cut(s) 176, 198, 445
AfaI GTAC 3 cut(s) 67, 247, 539
AfiI CCNNNNNNNGG 5 cut(s) 305, 464, 527, 928, 972
AgeI ACCGGT 1 cut(s) 575
AgsI TTSAA 8 cut(s) 14, 83, 213, 269, 595, 878, 944, 992
AhlI ACTAGT 1 cut(s) 722
AluBI AGCT 3 cut(s) 272, 425, 778
AluI AGCT 3 cut(s) 272, 425, 778
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 89, 713
AlwI GGATC 2 cut(s) 164, 177
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 4 cut(s) 641, 930, 946, 963
ApeKI GCWGC 1 cut(s) 778
ApoI RAATTY 3 cut(s) 176, 198, 445
AsiGI ACCGGT 1 cut(s) 575
Asp700I GAANNNNTTC 3 cut(s) 78, 807, 834
Asp718I GGTACC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 4 cut(s) 518, 641, 931, 947
AsuHPI GGTGA 2 cut(s) 104, 542
AvaII GGWCC 1 cut(s) 518
BaeI ACNNNNGTAYC 2 cut(s) 880, 913
BalI TGGCCA 1 cut(s) 965
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 3 cut(s) 295, 392, 537
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 1 cut(s) 765
BccI CCATC 3 cut(s) 248, 727, 746
BciVI GTATCC 2 cut(s) 312, 908
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 89, 713
BcuI ACTAGT 1 cut(s) 722
BfaI CTAG 1 cut(s) 723
BfuAI ACCTGC 2 cut(s) 676, 966
BfuI GTATCC 2 cut(s) 312, 908
BglII AGATCT 1 cut(s) 885
BisI GCNGC 2 cut(s) 779, 926
BlsI GCNGC 2 cut(s) 780, 927
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 4 cut(s) 518, 641, 931, 947
BmiI GGNNCC 5 cut(s) 171, 297, 394, 539, 949
BmsI GCATC 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 774
Bsa29I ATCGAT 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 2 cut(s) 172, 575
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 464, 527, 928, 972
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 977
BseAI TCCGGA 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 5 cut(s) 305, 464, 527, 928, 972
BseMII CTCAG 1 cut(s) 788
BseNI ACTGG 1 cut(s) 977
BseXI GCAGC 1 cut(s) 765
BsgI GTGCAG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 4 cut(s) 643, 932, 948, 965
BshNI GGYRCC 3 cut(s) 295, 392, 537
BshTI ACCGGT 1 cut(s) 575
BshVI ATCGAT 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 3 cut(s) 173, 489, 576
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 5 cut(s) 305, 464, 527, 928, 972
BsmAI GTCTC 2 cut(s) 89, 713
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 4 cut(s) 643, 932, 948, 965
Bsp1286I GDGCHC 1 cut(s) 156
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 3 cut(s) 169, 289, 885
BspACI CCGC 4 cut(s) 396, 535, 923, 926
BspANI GGCC 4 cut(s) 643, 932, 948, 965
BspCNI CTCAG 1 cut(s) 787
BspDI ATCGAT 1 cut(s) 252
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 5 cut(s) 171, 297, 394, 539, 949
BspMI ACCTGC 2 cut(s) 676, 966
BspPI GGATC 2 cut(s) 164, 177
BspT107I GGYRCC 3 cut(s) 295, 392, 537
BsrBI CCGCTC 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 1 cut(s) 977
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 169, 289, 885
BssT1I CCWWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 2 cut(s) 711, 723
BstC8I GCNNGC 3 cut(s) 923, 930, 963
BstDEI CTNAG 2 cut(s) 614, 774
BstF5I GGATG 1 cut(s) 490
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 3 cut(s) 172, 292, 888
BstMAI GTCTC 2 cut(s) 89, 713
BstMBI GATC 3 cut(s) 169, 289, 885
BstMCI CGRYCG 1 cut(s) 576
BstNSI RCATGY 3 cut(s) 223, 361, 378
BstV1I GCAGC 1 cut(s) 765
BstX2I RGATCY 2 cut(s) 169, 885
BstYI RGATCY 2 cut(s) 169, 885
Bsu15I ATCGAT 1 cut(s) 252
BsuI GTATCC 2 cut(s) 312, 908
BsuRI GGCC 4 cut(s) 643, 932, 948, 965
BsuTUI ATCGAT 1 cut(s) 252
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 2 cut(s) 676, 966
Cac8I GCNNGC 3 cut(s) 923, 930, 963
CfoI GCGC 1 cut(s) 633
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 4 cut(s) 518, 641, 931, 947
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 3 cut(s) 66, 246, 538
CspAI ACCGGT 1 cut(s) 575
CviAII CATG 8 cut(s) 220, 263, 285, 358, 375, 401, 599, 749
CviQI GTAC 3 cut(s) 66, 246, 538
DdeI CTNAG 2 cut(s) 614, 774
DpnI GATC 3 cut(s) 171, 291, 887
DpnII GATC 3 cut(s) 169, 289, 885
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 2 cut(s) 711, 723
EarI CTCTTC 2 cut(s) 711, 723
Eco130I CCWWGG 1 cut(s) 164
Eco32I GATATC 2 cut(s) 279, 494
Eco47I GGWCC 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 947
EcoRV GATATC 2 cut(s) 279, 494
EcoT14I CCWWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 8 cut(s) 223, 266, 288, 361, 378, 404, 602, 752
FaqI GGGAC 1 cut(s) 57
FatI CATG 8 cut(s) 219, 262, 284, 357, 374, 400, 598, 748
FauI CCCGC 1 cut(s) 930
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 779, 926
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 2 cut(s) 779, 926
FspBI CTAG 1 cut(s) 723
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 779, 926
HaeIII GGCC 4 cut(s) 643, 932, 948, 965
HapII CCGG 3 cut(s) 173, 489, 576
HhaI GCGC 1 cut(s) 633
Hin1II CATG 8 cut(s) 223, 266, 288, 361, 378, 404, 602, 752
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 3 cut(s) 209, 652, 835
HpaII CCGG 3 cut(s) 173, 489, 576
HphI GGTGA 2 cut(s) 104, 542
Hpy166II GTNNAC 2 cut(s) 68, 763
Hpy188I TCNGA 4 cut(s) 54, 802, 829, 912
Hpy188III TCNNGA 3 cut(s) 173, 213, 883
Hpy8I GTNNAC 2 cut(s) 68, 763
HpyAV CCTTC 4 cut(s) 383, 499, 554, 938
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 6 cut(s) 240, 348, 361, 374, 380, 602
HpyF3I CTNAG 2 cut(s) 614, 774
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 8 cut(s) 223, 266, 288, 361, 378, 404, 602, 752
HspAI GCGC 1 cut(s) 631
Kpn2I TCCGGA 1 cut(s) 172
KpnI GGTACC 1 cut(s) 541
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 3 cut(s) 169, 289, 885
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 765
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 723
MaeII ACGT 1 cut(s) 76
MalI GATC 3 cut(s) 171, 291, 887
MbiI CCGCTC 1 cut(s) 535
MboI GATC 3 cut(s) 169, 289, 885
MboII GAAGA 5 cut(s) 321, 600, 652, 728, 740
MflI RGATCY 2 cut(s) 169, 885
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 6 cut(s) 176, 198, 362, 445, 703, 916
MluNI TGGCCA 1 cut(s) 965
MnlI CCTC 9 cut(s) 234, 447, 611, 730, 783, 795, 822, 849, 961
Mox20I TGGCCA 1 cut(s) 965
Mph1103I ATGCAT 1 cut(s) 604
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 3 cut(s) 78, 807, 834
MscI TGGCCA 1 cut(s) 965
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 2 cut(s) 90, 373
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 778
MspI CCGG 3 cut(s) 173, 489, 576
Mva1269I GAATGC 1 cut(s) 186
NdeII GATC 3 cut(s) 169, 289, 885
NlaIII CATG 8 cut(s) 223, 266, 288, 361, 378, 404, 602, 752
NlaIV GGNNCC 5 cut(s) 171, 297, 394, 539, 949
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 3 cut(s) 223, 361, 378
PaqCI CACCTGC 1 cut(s) 676
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 3 cut(s) 78, 807, 834
PfeI GAWTC 3 cut(s) 209, 652, 835
PflFI GACNNNGTC 1 cut(s) 48
PflMI CCANNNNNTGG 2 cut(s) 305, 972
PinAI ACCGGT 1 cut(s) 575
PkrI GCNGC 2 cut(s) 780, 927
Psp1406I AACGTT 1 cut(s) 76
PspN4I GGNNCC 5 cut(s) 171, 297, 394, 539, 949
PspPI GGNCC 4 cut(s) 518, 641, 931, 947
PsuI RGATCY 2 cut(s) 169, 885
PsyI GACNNNGTC 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 778
RsaI GTAC 3 cut(s) 67, 247, 539
RsaNI GTAC 3 cut(s) 66, 246, 538
RseI CAYNNNNRTG 2 cut(s) 90, 373
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 779, 926
Sau3AI GATC 3 cut(s) 169, 289, 885
Sau96I GGNCC 4 cut(s) 518, 641, 931, 947
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 475
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 2 cut(s) 90, 373
SpeI ACTAGT 1 cut(s) 722
Sse9I AATT 6 cut(s) 176, 198, 362, 445, 703, 916
SsiI CCGC 4 cut(s) 396, 535, 923, 926
SspI AATATT 2 cut(s) 591, 874
SspMI CTAG 1 cut(s) 723
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 79
TaqI TCGA 4 cut(s) 252, 275, 354, 443
TasI AATT 6 cut(s) 176, 198, 362, 445, 703, 916
TatI WGTACW 1 cut(s) 65
TauI GCSGC 1 cut(s) 928
TfiI GAWTC 3 cut(s) 209, 652, 835
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 251, 518, 708, 759
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 48
Van91I CCANNNNNTGG 2 cut(s) 305, 972
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 3 cut(s) 176, 198, 445
XceI RCATGY 3 cut(s) 223, 361, 378
XmnI GAANNNNTTC 3 cut(s) 78, 807, 834
XspI CTAG 1 cut(s) 723
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.