Rw6G008410
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000469
Physical Location & Seq
Forward (+)
14298148 .. 14299514
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008410.1

Sequence Viewer

Length: 1152 bp
ATGGAAGATGGTGACTCTGATAGTTCTTCAGAACTAGATGAAATGGCACAACATATGATAATATGTATGAACATCTATGATTATTGGTCTTCATACATAGACAAGGTTCCTTGCCATACATCGATATTATCTGGAGCTGAATATGTGCAAGAGTTGCTGAATGGACATCCAGATAGAATTTATAACTCATTTCGCATGGATAAACATGTATTTCAAAGGTTGTGTTGCACACTTGAGAGTTTAAATTTATTAAAAGATGATCGGCATGTAGGCATTCAAGAGGCCGTGGCTATTTTCTTATATATACGCTTTCAACGGTCAAAAGATACTATTCATCGACAATTTAAGCGTGTGTTAGCAGCCTTGTGTAAGTTATCGCCACAGATCATACGTACTCAAAGTCAAGGAGAAACACCTCCAGAAATTTTGAACAATCCAAAGTTTTATCCATATTTTGAGAAATGTATTGGGGCAATTGATGGAACACATGTCGCTGCATGGGCCCCGGCTCAGAAACAAACTTCATATCGTGGTAGGAAGGTCCTTGTTACCCAAAATGTCATGTGTGCATGCTCCTTTGACATGATGTTCACCTTTGTTTACACTGGATGGGAAGGGACTGCGAATGATTCTAGGGTCTTTGCAGATGCAGTGACCAGGCCAGAGAATAAATTTCCATTTCCAAATGAAGGATATTATTATGTAGTGGATGCTGGGTATACAAACATGCCAGGATTCTTAGCTCCTTATCGAGGTCAGAGGTATCATTTGCGTGATTACAGAGGACCTCGTCGTACACCAAGAGGCCCTAGGGAGTTGTTCAATTACAGACATTCTTCATTGCGAAATGTGATTGAGCGATGTTTTGGTGTACTGAAAGCACGTTTTCCAATTTTAAAATATATGCCTAATTATCCTCCAAGAAGACAACGACGTATCCCTATTGCATGTTGTGTTTTACACAATTTTATTCGGAAGGAAGCTCGTCGCGACAGATTGTTTGAAGCTTTTGATGTAGAAGATATGATTTTTGAGGAGGAAAACAGTACACCAGCGAACTTAGATATGTCACAAGAGAACCTTGCACAAATGACTAATGTTAGAAATGAAATTGCAGAAGACTTGTGGCAAAACTTTATCCCTCACCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

383

Amino Acids

44.82

Weight (kDa)

7.96

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 40 - 124 9.8e-29 Domain of unknown function (DUF8040)
Plant_tran PF04827 152 - 328 1.6e-08 Plant transposon protein
DDE_Tnp_1 PF01609 153 - 300 1.8e-06 Transposase DDE domain
DDE_Tnp_4 PF13359 159 - 322 2.1e-23 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AccI GTMKAC 1 cut(s) 719
AccII CGCG 1 cut(s) 990
AcsI RAATTY 4 cut(s) 177, 244, 423, 671
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 4 cut(s) 394, 796, 873, 1048
AfiI CCNNNNNNNGG 2 cut(s) 689, 752
AflIII ACRYGT 2 cut(s) 205, 487
AgsI TTSAA 6 cut(s) 215, 278, 314, 430, 823, 1004
AjnI CCWGG 2 cut(s) 656, 730
AluBI AGCT 4 cut(s) 137, 743, 983, 1007
AluI AGCT 4 cut(s) 137, 743, 983, 1007
AoxI GGCC 4 cut(s) 282, 501, 659, 805
ApaI GGGCCC 1 cut(s) 505
ApeKI GCWGC 2 cut(s) 359, 494
ApoI RAATTY 4 cut(s) 177, 244, 423, 671
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
AspA2I CCTAGG 1 cut(s) 809
AspS9I GGNCC 5 cut(s) 501, 502, 541, 785, 806
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 3 cut(s) 23, 583, 1136
AvaII GGWCC 2 cut(s) 541, 785
AvrII CCTAGG 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 505
BbsI GAAGAC 3 cut(s) 81, 931, 1125
BbvI GCAGC 2 cut(s) 371, 481
BccI CCATC 3 cut(s) 2, 473, 603
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 658, 732
BciVI GTATCC 1 cut(s) 947
BcnI CCSGG 1 cut(s) 506
BfaI CTAG 3 cut(s) 35, 633, 810
BfuI GTATCC 1 cut(s) 947
BisI GCNGC 2 cut(s) 360, 495
BlnI CCTAGG 1 cut(s) 809
BlsI GCNGC 2 cut(s) 361, 496
Bme1390I CCNGG 3 cut(s) 506, 658, 732
Bme18I GGWCC 2 cut(s) 541, 785
BmgT120I GGNCC 5 cut(s) 501, 502, 541, 785, 806
BmiI GGNNCC 3 cut(s) 108, 503, 504
BmrFI CCNGG 3 cut(s) 506, 658, 732
BmsI GCATC 2 cut(s) 637, 700
BpiI GAAGAC 3 cut(s) 81, 931, 1125
BpmI CTGGAG 2 cut(s) 153, 402
BpuEI CTTGAG 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 506
Bsa29I ATCGAT 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 285, 504, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 752
Bse1I ACTGG 1 cut(s) 610
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 2 cut(s) 658, 732
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 285, 504, 809
BseGI GGATG 3 cut(s) 166, 614, 715
BseLI CCNNNNNNNGG 2 cut(s) 689, 752
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 1 cut(s) 1049
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 371, 481
BseYI CCCAGC 1 cut(s) 713
Bsh1236I CGCG 1 cut(s) 990
BshFI GGCC 4 cut(s) 284, 503, 661, 807
BshVI ATCGAT 1 cut(s) 122
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 2 cut(s) 689, 752
BsmFI GGGAC 1 cut(s) 631
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 4 cut(s) 284, 503, 661, 807
Bsp120I GGGCCC 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 2 cut(s) 259, 384
Bsp68I TCGCGA 1 cut(s) 990
BspANI GGCC 4 cut(s) 284, 503, 661, 807
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 122
BspFNI CGCG 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 108, 503, 504
BsrDI GCAATG 1 cut(s) 839
BsrI ACTGG 1 cut(s) 610
BssECI CCNNGG 3 cut(s) 285, 504, 809
BssMI GATC 2 cut(s) 259, 384
BssNAI GTATAC 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 809
Bst1107I GTATAC 1 cut(s) 720
Bst2UI CCWGG 2 cut(s) 658, 732
Bst4CI ACNGT 2 cut(s) 318, 1046
BstAPI GCANNNNNTGC 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 4 cut(s) 510, 739, 1060, 1149
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 750
BstF5I GGATG 3 cut(s) 166, 614, 715
BstFNI CGCG 1 cut(s) 990
BstKTI GATC 2 cut(s) 262, 387
BstMBI GATC 2 cut(s) 259, 384
BstMWI GCNNNNNNNGC 2 cut(s) 154, 500
BstNI CCWGG 2 cut(s) 658, 732
BstNSI RCATGY 6 cut(s) 209, 269, 491, 573, 730, 951
BstSCI CCNGG 3 cut(s) 504, 656, 730
BstSLI GKGCMC 1 cut(s) 505
BstSNI TACGTA 1 cut(s) 392
BstUI CGCG 1 cut(s) 990
BstV1I GCAGC 2 cut(s) 371, 481
BstV2I GAAGAC 3 cut(s) 81, 931, 1125
BstZ17I GTATAC 1 cut(s) 720
Bsu15I ATCGAT 1 cut(s) 122
BsuI GTATCC 1 cut(s) 947
BsuRI GGCC 4 cut(s) 284, 503, 661, 807
BsuTUI ATCGAT 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 874
BtsCI GGATG 3 cut(s) 166, 614, 715
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 2 cut(s) 603, 657
BtuMI TCGCGA 1 cut(s) 990
Cac8I GCNNGC 1 cut(s) 571
Cfr13I GGNCC 5 cut(s) 501, 502, 541, 785, 806
ClaI ATCGAT 1 cut(s) 122
Csp6I GTAC 4 cut(s) 393, 795, 872, 1047
CviQI GTAC 4 cut(s) 393, 795, 872, 1047
DdeI CTNAG 4 cut(s) 510, 739, 1060, 1149
DpnI GATC 2 cut(s) 261, 386
DpnII GATC 2 cut(s) 259, 384
DraI TTTAAA 2 cut(s) 243, 897
Eco105I TACGTA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 809
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 541, 785
Eco57I CTGAAG 1 cut(s) 12
EcoNI CCTNNNNNAGG 1 cut(s) 750
EcoO109I RGGNCCY 4 cut(s) 502, 541, 785, 806
EcoRII CCWGG 2 cut(s) 656, 730
EcoT14I CCWWGG 1 cut(s) 809
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 809
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FaqI GGGAC 1 cut(s) 631
FauNDI CATATG 1 cut(s) 54
FblI GTMKAC 1 cut(s) 719
Fnu4HI GCNGC 2 cut(s) 360, 495
FokI GGATG 3 cut(s) 153, 621, 722
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 2 cut(s) 360, 495
FspBI CTAG 3 cut(s) 35, 633, 810
GluI GCNGC 2 cut(s) 360, 495
GsaI CCCAGC 1 cut(s) 717
GsuI CTGGAG 2 cut(s) 153, 402
HaeIII GGCC 4 cut(s) 284, 503, 661, 807
HapII CCGG 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 1005
HinfI GANTC 3 cut(s) 14, 629, 735
HpaII CCGG 1 cut(s) 506
HphI GGTGA 3 cut(s) 23, 583, 1136
Hpy166II GTNNAC 6 cut(s) 591, 601, 720, 797, 872, 1049
Hpy188I TCNGA 5 cut(s) 19, 31, 513, 759, 975
Hpy188III TCNNGA 5 cut(s) 132, 170, 278, 419, 989
Hpy8I GTNNAC 6 cut(s) 591, 601, 720, 797, 872, 1049
Hpy99I CGWCG 3 cut(s) 795, 936, 990
HpyAV CCTTC 4 cut(s) 532, 608, 683, 970
HpyCH4III ACNGT 2 cut(s) 318, 1046
HpyCH4IV ACGT 3 cut(s) 391, 883, 934
HpyCH4V TGCA 9 cut(s) 148, 228, 497, 569, 644, 650, 947, 1085, 1115
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 500
HpyF3I CTNAG 4 cut(s) 510, 739, 1060, 1149
HpySE526I ACGT 3 cut(s) 391, 883, 934
Kzo9I GATC 2 cut(s) 259, 384
LmnI GCTCC 3 cut(s) 134, 578, 748
Lsp1109I GCAGC 2 cut(s) 371, 481
LweI GCATC 2 cut(s) 637, 700
MaeI CTAG 3 cut(s) 35, 633, 810
MaeII ACGT 3 cut(s) 391, 883, 934
MaeIII GTNAC 4 cut(s) 11, 547, 652, 1068
MalI GATC 2 cut(s) 261, 386
MboI GATC 2 cut(s) 259, 384
MboII GAAGA 7 cut(s) 17, 18, 81, 828, 936, 1031, 1130
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 8
MseI TTAA 4 cut(s) 242, 251, 345, 896
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 3 cut(s) 506, 658, 732
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 2 cut(s) 658, 732
MvnI CGCG 1 cut(s) 990
MwoI GCNNNNNNNGC 2 cut(s) 154, 500
NciI CCSGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 54
NdeII GATC 2 cut(s) 259, 384
NlaIV GGNNCC 3 cut(s) 108, 503, 504
NmuCI GTSAC 3 cut(s) 11, 652, 1068
NruI TCGCGA 1 cut(s) 990
NspI RCATGY 6 cut(s) 209, 269, 491, 573, 730, 951
PaeI GCATGC 1 cut(s) 573
PciI ACATGT 2 cut(s) 205, 487
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 629, 735
PflFI GACNNNGTC 1 cut(s) 789
PkrI GCNGC 2 cut(s) 361, 496
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 392
PpuMI RGGWCCY 2 cut(s) 541, 785
PscI ACATGT 2 cut(s) 205, 487
PsiI TTATAA 1 cut(s) 183
Psp5II RGGWCCY 2 cut(s) 541, 785
Psp6I CCWGG 2 cut(s) 656, 730
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 2 cut(s) 656, 730
PspN4I GGNNCC 3 cut(s) 108, 503, 504
PspOMI GGGCCC 1 cut(s) 501
PspPI GGNCC 5 cut(s) 501, 502, 541, 785, 806
PspPPI RGGWCCY 2 cut(s) 541, 785
PsyI GACNNNGTC 1 cut(s) 789
RruI TCGCGA 1 cut(s) 990
RsaI GTAC 4 cut(s) 394, 796, 873, 1048
RsaNI GTAC 4 cut(s) 393, 795, 872, 1047
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 4 cut(s) 242, 251, 345, 896
SatI GCNGC 2 cut(s) 360, 495
Sau3AI GATC 2 cut(s) 259, 384
Sau96I GGNCC 5 cut(s) 501, 502, 541, 785, 806
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 3 cut(s) 506, 658, 732
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 2 cut(s) 637, 700
SinI GGWCC 2 cut(s) 541, 785
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SnaBI TACGTA 1 cut(s) 392
SphI GCATGC 1 cut(s) 573
SspMI CTAG 3 cut(s) 35, 633, 810
StyD4I CCNGG 3 cut(s) 504, 656, 730
StyI CCWWGG 1 cut(s) 809
TaaI ACNGT 2 cut(s) 318, 1046
TaiI ACGT 3 cut(s) 394, 886, 937
TaqI TCGA 3 cut(s) 122, 337, 751
TatI WGTACW 2 cut(s) 871, 1046
TfiI GAWTC 2 cut(s) 629, 735
Tru1I TTAA 4 cut(s) 242, 251, 345, 896
Tru9I TTAA 4 cut(s) 242, 251, 345, 896
TscAI CASTG 2 cut(s) 610, 657
TseFI GTSAC 3 cut(s) 11, 652, 1068
TseI GCWGC 2 cut(s) 359, 494
Tsp45I GTSAC 3 cut(s) 11, 652, 1068
TspDTI ATGAA 8 cut(s) 54, 81, 83, 323, 513, 702, 828, 1122
TspRI CASTG 2 cut(s) 610, 657
Tth111I GACNNNGTC 1 cut(s) 789
VpaK11BI GGWCC 2 cut(s) 541, 785
XagI CCTNNNNNAGG 1 cut(s) 750
XapI RAATTY 4 cut(s) 177, 244, 423, 671
XceI RCATGY 6 cut(s) 209, 269, 491, 573, 730, 951
XmaJI CCTAGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 3 cut(s) 35, 633, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.