FvH4_7g00061
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000469
Physical Location & Seq
Reverse (-)
660875 .. 661446
572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00061.t1

Sequence Viewer

Length: 483 bp
ATGTTTCTATATATTTTGGGAGGGGGTGAGACCAATAGGAATACACAAGAACGTTTTCAATGTTCGGGTGAGACGGTGAGCAAGTATTTCTCCCAAATGCTAGACATTCTCTATAATATGGCTAGAGTGCTAATAAAGCCATTGGATCCCGAATTCAGAAGTACCCCAAAAGAAATTGAAAGGGACACAAGATACATGCCTCATTTTAAGGATTGTGTTGGCCCAATTGATGGTGTTCATGTTCAAGCTATTATTTCTCCATATGATCAAGTGCCGTATATCAGTAGAAAAGGGATACCCACCCAAAATGTGATGGCCGTATGTGACTTCGACACACAATTCACATTTGTTTCTGCAGGGTGGGAAGGCACTGCCCATGATAGTAGAGTATTCTTGTCGGCCATGCGCAACCCTCTAGCAAATTTTCCCAAACCCCCAAACGGTAATATTTGTTTTTTCTTAGATTGTGATATACTAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

161

Amino Acids

18.23

Weight (kDa)

5.55

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 1 - 37 6.6e-11 Domain of unknown function (DUF8040)
DDE_Tnp_4 PF13359 76 - 131 2.5e-06 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 230
AclI AACGTT 1 cut(s) 52
AclWI GGATC 2 cut(s) 140, 153
AcoI YGGCCR 2 cut(s) 315, 399
AcsI RAATTY 2 cut(s) 152, 421
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 230, 440
AgsI TTSAA 3 cut(s) 59, 179, 245
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 2 cut(s) 23, 65
AlwI GGATC 2 cut(s) 140, 153
AoxI GGCC 3 cut(s) 220, 315, 399
ApoI RAATTY 2 cut(s) 152, 421
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 38, 80, 88
BamHI GGATCC 1 cut(s) 145
BccI CCATC 2 cut(s) 224, 307
BceAI ACGGC 2 cut(s) 259, 302
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 23, 65
BfaI CTAG 3 cut(s) 101, 123, 416
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 440
BseLI CCNNNNNNNGG 2 cut(s) 230, 440
BshFI GGCC 3 cut(s) 222, 317, 401
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 230, 440
BsmAI GTCTC 2 cut(s) 23, 65
BsmBI CGTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 3 cut(s) 222, 317, 401
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 145, 265
BspANI GGCC 3 cut(s) 222, 317, 401
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 2 cut(s) 140, 153
BspTNI GGTCTC 1 cut(s) 23
BssMI GATC 2 cut(s) 145, 265
Bst4CI ACNGT 2 cut(s) 76, 443
BstDEI CTNAG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 2 cut(s) 148, 268
BstMAI GTCTC 2 cut(s) 23, 65
BstMBI GATC 2 cut(s) 145, 265
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 3 cut(s) 222, 317, 401
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 162
CviAII CATG 4 cut(s) 196, 239, 377, 403
CviJI RGCY 6 cut(s) 122, 139, 222, 248, 317, 401
CviKI_1 RGCY 6 cut(s) 122, 139, 222, 248, 317, 401
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 460
DpnI GATC 2 cut(s) 147, 267
DpnII GATC 2 cut(s) 145, 265
EaeI YGGCCR 2 cut(s) 315, 399
Eco31I GGTCTC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 4 cut(s) 199, 242, 380, 406
FaqI GGGAC 1 cut(s) 197
FatI CATG 4 cut(s) 195, 238, 376, 402
FauNDI CATATG 1 cut(s) 262
FbaI TGATCA 1 cut(s) 265
FspBI CTAG 3 cut(s) 101, 123, 416
FspI TGCGCA 1 cut(s) 407
GlaI GCGC 1 cut(s) 407
HaeIII GGCC 3 cut(s) 222, 317, 401
HhaI GCGC 1 cut(s) 408
Hin1II CATG 4 cut(s) 199, 242, 380, 406
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HphI GGTGA 3 cut(s) 38, 80, 88
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 76, 443
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 460
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 4 cut(s) 199, 242, 380, 406
HspAI GCGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 145, 265
LpnPI CCDG 1 cut(s) 342
MaeI CTAG 3 cut(s) 101, 123, 416
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 147, 267
MboI GATC 2 cut(s) 145, 265
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 145
MluCI AATT 5 cut(s) 152, 174, 225, 338, 421
MnlI CCTC 3 cut(s) 14, 210, 423
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 207
MunI CAATTG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeI CATATG 1 cut(s) 262
NdeII GATC 2 cut(s) 145, 265
NlaIII CATG 4 cut(s) 199, 242, 380, 406
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 323
NsbI TGCGCA 1 cut(s) 407
NspI RCATGY 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 2 cut(s) 145, 265
Sau96I GGNCC 1 cut(s) 221
SetI ASST 2 cut(s) 55, 250
SfcI CTRYAG 1 cut(s) 354
Sse9I AATT 5 cut(s) 152, 174, 225, 338, 421
SspI AATATT 1 cut(s) 448
SspMI CTAG 3 cut(s) 101, 123, 416
TaaI ACNGT 2 cut(s) 76, 443
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 330
TasI AATT 5 cut(s) 152, 174, 225, 338, 421
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 376
Van91I CCANNNNNTGG 1 cut(s) 230
XapI RAATTY 2 cut(s) 152, 421
XceI RCATGY 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 3 cut(s) 101, 123, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.