Rmu_co8287949.1_g000001
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8287949.1
OG0000469
Physical Location & Seq
Reverse (-)
2 .. 737
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8287949.1_g000001.1.cds

Sequence Viewer

Length: 559 bp
atggtgtgtaacttggctatagaagtcatacaaccagaggatcgtgagttcaagaacactgcaccacagatattgagggattctagatatatgcctcattttaaggattgtatcggtgccatagacggtgtacatgttcgtgcttcaattcgtcctgcagatcaaataccctatattggaagaaaagggatgccgactcaaaacataatggctgcatgtaactttgatatgcaattcatatttgcatgtgcaggttgggaaggtactgcacatgatacaaggattttcttatctgccatacggaatcctaagtggaattttcccaagcctcctagtggaaaatattatttagttgatgcaggatacccccaaatgaaagggtacctgggaccatataaaaataacacatatcatcttccagattttcgtaggggtggtggcccgacaggccctaaggaggtattcaactacgtgcactcttctctcagaagcgtcattgaacgcacttttggagtctggaagaaaaagtggaagattttaagggacatgcctaactatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

186

Amino Acids

21.38

Weight (kDa)

9.53

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
Acc65I GGTACC 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 116, 381
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 3 cut(s) 132, 265, 383
AfiI CCNNNNNNNGG 3 cut(s) 176, 335, 457
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 4 cut(s) 52, 147, 466, 500
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
Alw21I GWGCWC 1 cut(s) 477
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 1 cut(s) 48
AoxI GGCC 2 cut(s) 439, 448
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 316
Asp718I GGTACC 1 cut(s) 381
AspS9I GGNCC 3 cut(s) 389, 440, 449
AvaII GGWCC 1 cut(s) 389
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 2 cut(s) 116, 381
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 386
BciVI GTATCC 1 cut(s) 356
BfaI CTAG 2 cut(s) 84, 333
BfmI CTRYAG 2 cut(s) 18, 156
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 447
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 389, 440, 449
BmiI GGNNCC 3 cut(s) 118, 383, 390
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 180, 346
BsaAI YACGTR 1 cut(s) 472
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 335, 457
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 3 cut(s) 176, 335, 457
BseMII CTCAG 1 cut(s) 499
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 3 cut(s) 45, 252, 270
BshFI GGCC 2 cut(s) 441, 450
BshNI GGYRCC 2 cut(s) 116, 381
BsiHKAI GWGCWC 1 cut(s) 477
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 3 cut(s) 176, 335, 457
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 2 cut(s) 441, 450
Bsp1286I GDGCHC 1 cut(s) 477
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 2 cut(s) 40, 160
BspANI GGCC 2 cut(s) 441, 450
BspCNI CTCAG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 118, 383, 390
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 116, 381
BsrGI TGTACA 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 2 cut(s) 40, 160
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 484
BstAUI TGTACA 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 472
BstDEI CTNAG 3 cut(s) 309, 453, 485
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 2 cut(s) 43, 163
BstMBI GATC 2 cut(s) 40, 160
BstMWI GCNNNNNNNGC 1 cut(s) 447
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 4 cut(s) 137, 219, 249, 550
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 2 cut(s) 18, 156
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 453
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 2 cut(s) 441, 450
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 242
Cfr13I GGNCC 3 cut(s) 389, 440, 449
CseI GACGC 1 cut(s) 481
Csp6I GTAC 3 cut(s) 131, 264, 382
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 5 cut(s) 134, 216, 246, 272, 547
CviJI RGCY 5 cut(s) 17, 212, 328, 441, 450
CviKI_1 RGCY 5 cut(s) 17, 212, 328, 441, 450
CviQI GTAC 3 cut(s) 131, 264, 382
DdeI CTNAG 3 cut(s) 309, 453, 485
DpnI GATC 2 cut(s) 42, 162
DpnII GATC 2 cut(s) 40, 160
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 384
FaeI CATG 5 cut(s) 137, 219, 249, 275, 550
FaqI GGGAC 1 cut(s) 402
FatI CATG 5 cut(s) 133, 215, 245, 271, 546
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 84, 333
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 2 cut(s) 441, 450
HgaI GACGC 1 cut(s) 481
Hin1II CATG 5 cut(s) 137, 219, 249, 275, 550
HinfI GANTC 4 cut(s) 80, 196, 304, 513
Hpy166II GTNNAC 2 cut(s) 131, 475
Hpy188I TCNGA 1 cut(s) 488
Hpy188III TCNNGA 5 cut(s) 44, 52, 84, 419, 517
Hpy8I GTNNAC 2 cut(s) 131, 475
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 9 cut(s) 62, 158, 215, 232, 245, 251, 269, 359, 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 447
HpyF3I CTNAG 3 cut(s) 309, 453, 485
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 5 cut(s) 137, 219, 249, 275, 550
KpnI GGTACC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 40, 160
LpnPI CCDG 9 cut(s) 48, 168, 237, 345, 371, 398, 432, 432, 502
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 180, 346
MaeI CTAG 2 cut(s) 84, 333
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 8, 218
MalI GATC 2 cut(s) 42, 162
MboI GATC 2 cut(s) 40, 160
MboII GAAGA 5 cut(s) 192, 407, 471, 532, 544
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 3 cut(s) 147, 233, 316
MlyI GAGTC 2 cut(s) 190, 522
MnlI CCTC 5 cut(s) 31, 69, 105, 339, 451
MseI TTAA 2 cut(s) 102, 539
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 447
NdeII GATC 2 cut(s) 40, 160
NlaIII CATG 5 cut(s) 137, 219, 249, 275, 550
NlaIV GGNNCC 3 cut(s) 118, 383, 390
NspI RCATGY 4 cut(s) 137, 219, 249, 550
PciI ACATGT 1 cut(s) 133
PfeI GAWTC 2 cut(s) 80, 304
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 2 cut(s) 190, 521
PpsI GAGTC 2 cut(s) 190, 521
Ppu21I YACGTR 1 cut(s) 472
PscI ACATGT 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 3 cut(s) 118, 383, 390
PspPI GGNCC 3 cut(s) 389, 440, 449
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 3 cut(s) 132, 265, 383
RsaNI GTAC 3 cut(s) 131, 264, 382
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 2 cut(s) 102, 539
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 40, 160
Sau96I GGNCC 3 cut(s) 389, 440, 449
SchI GAGTC 2 cut(s) 190, 522
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 477
SetI ASST 5 cut(s) 256, 265, 387, 462, 474
SfaNI GCATC 2 cut(s) 180, 346
SfcI CTRYAG 2 cut(s) 18, 156
SfiI GGCCNNNNNGGCC 1 cut(s) 447
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 3 cut(s) 147, 233, 316
SspI AATATT 1 cut(s) 344
SspMI CTAG 2 cut(s) 84, 333
StyD4I CCNGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 474
TasI AATT 3 cut(s) 147, 233, 316
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 2 cut(s) 80, 304
Tru1I TTAA 2 cut(s) 102, 539
Tru9I TTAA 2 cut(s) 102, 539
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 226, 389
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 1 cut(s) 64
VneI GTGCAC 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 1 cut(s) 316
XbaI TCTAGA 1 cut(s) 83
XceI RCATGY 4 cut(s) 137, 219, 249, 550
XspI CTAG 2 cut(s) 84, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.