FvH4_7g19211
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000469
Physical Location & Seq
Forward (+)
15911669 .. 15916509
4841 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19211.t1

Sequence Viewer

Length: 1011 bp
ATGTCAGAGAAAGATGACATTGAGGATGAGATATACATACGAAGCATACAATTTAATACTCTCCTCATTCAACATTATTATGAGAGTTATGTTCATAAAAATTCTTGCATGACATCGTCTCAAACAGGACATGGATGTGGGAATATGACGGCAAGAGAACGGTTTCAACATTCCGGGGAAACCGTTAGTAGGTATTTTGGAAAAGCATTAGATATGTTGTGTTCATATGGTGAGAAAATGATCAAGCCGTTGGATCCAGAATTTGAAAGTGTTGCGCCGGAGATAATGAGGGATAAGAGATACATGCCGCATTTTAAGGACTGCATTGGTGCTATTGATGGAGTGCATATTCCCGCTTCGATATCTCCTCAACATCAAATACCATTTATTGGTAGAAAAGGGATACCAACCCAAAATGTTATGGCGGTGTGTGATTTTAATATGCAATTTACATTTGTATGTGCCGGTTGGGAAGGGTCTGCTCATGATACAAGGGTGTTTCAATCAGTTCTTCGAAATCCCAATTCGAAGTTTCCTAAACCTCCACAAGGAAAATATTATGTCGTTGATGCGGGATACCCACAAATGAATGGATTTTTGGGACCCTATAAAGGTCCAAAACAACATTTTCAAGAATATCGTGGGCAAGGGCCAAGAAATGAAAAAGAGGTATTTAACCAAGCACACTCTTCTCTTAGAGGCGTTATAGAACGCACATTTGGAGCTTGGAAAAAAAAATGGCATATTTTAAGAAACATTGAAGGTTTTTCATTTAAGAAGCAAGTGAAGATTGTTATTGCAACCATGACTCTTCATAATTATATACGAAGACATGCGAATCATGATAGGCATTTTGACATTGATGAAAATTCGGTTGGCATATCAAATGATGAGATGGAGATGGATGATGCAGAAGAAGAAAATCATGGTCATGTTGCACAAGAAATGGAAGCAATAAGAAAAGAAATTGCTCAAAGTTTGATGAGAGCACGTGGTACCGCAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

337

Amino Acids

38.68

Weight (kDa)

6.99

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 36 - 75 9.9e-08 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 105 - 252 6.9e-11 Transposase DDE domain
DDE_Tnp_4 PF13359 112 - 273 7.9e-24 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 995
AccB1I GGYRCC 1 cut(s) 995
AccB7I CCANNNNNTGG 1 cut(s) 389
AciI CCGC 5 cut(s) 308, 354, 425, 572, 999
AclWI GGATC 2 cut(s) 248, 261
AcsI RAATTY 4 cut(s) 100, 260, 868, 1003
AcvI CACGTG 1 cut(s) 992
AfaI GTAC 1 cut(s) 997
AfiI CCNNNNNNNGG 4 cut(s) 189, 389, 548, 611
AgsI TTSAA 6 cut(s) 71, 167, 266, 503, 632, 761
AjuI GAANNNNNNNTTGG 6 cut(s) 581, 613, 702, 734, 858, 890
AluBI AGCT 1 cut(s) 725
AluI AGCT 1 cut(s) 725
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 2 cut(s) 248, 261
AoxI GGCC 1 cut(s) 650
ApoI RAATTY 4 cut(s) 100, 260, 868, 1003
Asp700I GAANNNNTTC 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 995
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 3 cut(s) 602, 614, 650
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 242
AsuII TTCGAA 2 cut(s) 514, 527
AvaII GGWCC 2 cut(s) 602, 614
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 995
BbrPI CACGTG 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 835
Bbv12I GWGCWC 1 cut(s) 991
BccI CCATC 3 cut(s) 332, 889, 895
BceAI ACGGC 2 cut(s) 165, 232
BciVI GTATCC 2 cut(s) 396, 569
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 123
BfuI GTATCC 2 cut(s) 396, 569
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 2 cut(s) 602, 614
BmgT120I GGNCC 3 cut(s) 602, 614, 650
BmiI GGNNCC 4 cut(s) 255, 603, 604, 997
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 559, 898
BpiI GAAGAC 1 cut(s) 835
Bpu14I TTCGAA 2 cut(s) 514, 527
BpuMI CCSGG 1 cut(s) 175
BsaAI YACGTR 1 cut(s) 992
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 389, 548, 611
Bse118I RCCGGY 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 3 cut(s) 31, 140, 910
BseLI CCNNNNNNNGG 4 cut(s) 189, 389, 548, 611
BseRI GAGGAG 2 cut(s) 53, 357
BshFI GGCC 1 cut(s) 652
BshNI GGYRCC 1 cut(s) 995
BsiHKAI GWGCWC 1 cut(s) 991
BsiSI CCGG 3 cut(s) 174, 278, 465
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 4 cut(s) 189, 389, 548, 611
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 615
BsnI GGCC 1 cut(s) 652
Bsp119I TTCGAA 2 cut(s) 514, 527
Bsp1286I GDGCHC 1 cut(s) 991
Bsp143I GATC 2 cut(s) 240, 253
BspACI CCGC 5 cut(s) 308, 354, 425, 572, 999
BspANI GGCC 1 cut(s) 652
BspHI TCATGA 2 cut(s) 484, 841
BspLI GGNNCC 4 cut(s) 255, 603, 604, 997
BspPI GGATC 2 cut(s) 248, 261
BspT104I TTCGAA 2 cut(s) 514, 527
BspT107I GGYRCC 1 cut(s) 995
BsrFI RCCGGY 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 2 cut(s) 240, 253
Bst4CI ACNGT 2 cut(s) 162, 184
Bst6I CTCTTC 2 cut(s) 694, 816
BstBAI YACGTR 1 cut(s) 992
BstBI TTCGAA 2 cut(s) 514, 527
BstDEI CTNAG 1 cut(s) 695
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 31, 140, 910
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 2 cut(s) 243, 256
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 240, 253
BstNSI RCATGY 2 cut(s) 307, 836
BstSCI CCNGG 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 835
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 2 cut(s) 396, 569
BsuRI GGCC 1 cut(s) 652
BtsCI GGATG 3 cut(s) 31, 140, 910
CciI TCATGA 2 cut(s) 484, 841
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 3 cut(s) 602, 614, 650
Csp6I GTAC 1 cut(s) 996
CviAII CATG 9 cut(s) 109, 131, 304, 485, 805, 833, 842, 926, 932
CviJI RGCY 3 cut(s) 247, 652, 725
CviKI_1 RGCY 3 cut(s) 247, 652, 725
CviQI GTAC 1 cut(s) 996
DdeI CTNAG 1 cut(s) 695
DpnI GATC 2 cut(s) 242, 255
DpnII GATC 2 cut(s) 240, 253
Eam1104I CTCTTC 2 cut(s) 694, 816
EarI CTCTTC 2 cut(s) 694, 816
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 602, 614
Eco72I CACGTG 1 cut(s) 992
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 602
EcoRV GATATC 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 9 cut(s) 112, 134, 307, 488, 808, 836, 845, 929, 935
FaqI GGGAC 1 cut(s) 615
FatI CATG 9 cut(s) 108, 130, 303, 484, 804, 832, 841, 925, 931
FauI CCCGC 2 cut(s) 361, 565
FauNDI CATATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 3 cut(s) 38, 147, 917
Fsp4HI GCNGC 1 cut(s) 308
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 652
HapII CCGG 3 cut(s) 174, 278, 465
HhaI GCGC 1 cut(s) 277
Hin1II CATG 9 cut(s) 112, 134, 307, 488, 808, 836, 845, 929, 935
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 2 cut(s) 808, 838
HpaII CCGG 3 cut(s) 174, 278, 465
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 4 cut(s) 257, 485, 632, 842
HpyAV CCTTC 2 cut(s) 467, 755
HpyCH4III ACNGT 2 cut(s) 162, 184
HpyCH4IV ACGT 1 cut(s) 991
HpyCH4V TGCA 7 cut(s) 108, 324, 346, 445, 800, 911, 938
HpyF3I CTNAG 1 cut(s) 695
HpySE526I ACGT 1 cut(s) 991
Hsp92II CATG 9 cut(s) 112, 134, 307, 488, 808, 836, 845, 929, 935
HspAI GCGC 1 cut(s) 275
KflI GGGWCCC 1 cut(s) 602
KpnI GGTACC 1 cut(s) 999
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 2 cut(s) 240, 253
LmnI GCTCC 1 cut(s) 722
LpnPI CCDG 5 cut(s) 111, 187, 270, 291, 478
LweI GCATC 2 cut(s) 559, 898
MaeII ACGT 1 cut(s) 991
MalI GATC 2 cut(s) 242, 255
MboI GATC 2 cut(s) 240, 253
MboII GAAGA 7 cut(s) 503, 681, 799, 803, 840, 926, 929
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 991
MluCI AATT 9 cut(s) 50, 100, 260, 446, 523, 817, 868, 966, 1003
MlyI GAGTC 1 cut(s) 802
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 7 cut(s) 16, 74, 282, 378, 552, 661, 692
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 7 cut(s) 54, 315, 438, 675, 749, 774, 1009
MslI CAYNNNNRTG 4 cut(s) 78, 135, 457, 930
MspI CCGG 3 cut(s) 174, 278, 465
MspR9I CCNGG 1 cut(s) 175
NciI CCSGG 1 cut(s) 175
NdeI CATATG 1 cut(s) 226
NdeII GATC 2 cut(s) 240, 253
NlaIII CATG 9 cut(s) 112, 134, 307, 488, 808, 836, 845, 929, 935
NlaIV GGNNCC 4 cut(s) 255, 603, 604, 997
NspI RCATGY 2 cut(s) 307, 836
NspV TTCGAA 2 cut(s) 514, 527
PagI TCATGA 2 cut(s) 484, 841
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 838
PflFI GACNNNGTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 802
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 1 cut(s) 802
Ppu21I YACGTR 1 cut(s) 992
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
PspCI CACGTG 1 cut(s) 992
PspN4I GGNNCC 4 cut(s) 255, 603, 604, 997
PspPI GGNCC 3 cut(s) 602, 614, 650
PspPPI RGGWCCY 1 cut(s) 602
PsuI RGATCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 115
RsaI GTAC 1 cut(s) 997
RsaNI GTAC 1 cut(s) 996
RseI CAYNNNNRTG 4 cut(s) 78, 135, 457, 930
SaqAI TTAA 7 cut(s) 54, 315, 438, 675, 749, 774, 1009
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 2 cut(s) 240, 253
Sau96I GGNCC 3 cut(s) 602, 614, 650
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 991
SetI ASST 7 cut(s) 194, 544, 616, 672, 727, 766, 994
SfaNI GCATC 2 cut(s) 559, 898
SfuI TTCGAA 2 cut(s) 514, 527
SinI GGWCC 2 cut(s) 602, 614
SmiMI CAYNNNNRTG 4 cut(s) 78, 135, 457, 930
Sse9I AATT 9 cut(s) 50, 100, 260, 446, 523, 817, 868, 966, 1003
SsiI CCGC 5 cut(s) 308, 354, 425, 572, 999
SspI AATATT 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 162, 184
TaiI ACGT 1 cut(s) 994
TaqI TCGA 3 cut(s) 359, 514, 527
TasI AATT 9 cut(s) 50, 100, 260, 446, 523, 817, 868, 966, 1003
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 1 cut(s) 838
Tru1I TTAA 7 cut(s) 54, 315, 438, 675, 749, 774, 1009
Tru9I TTAA 7 cut(s) 54, 315, 438, 675, 749, 774, 1009
TspDTI ATGAA 7 cut(s) 83, 213, 602, 675, 759, 803, 879
Tth111I GACNNNGTC 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 602, 614
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 4 cut(s) 100, 260, 868, 1003
XceI RCATGY 2 cut(s) 307, 836
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.