Rroxscaffold_1G00014970
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000469
Physical Location & Seq
Reverse (-)
18578376 .. 18580968
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014970.1

Sequence Viewer

Length: 357 bp
ATGGCGAAAGTGCTCATAAAGCCAGAAGATCCCGAATTTACAAGCATCCCAAATGAAATTCTAAATGACTCAAGATACATGCCTCATTTTAAGGATTGTATTGGCGCTATTGATGGTGTTCATGTTCAAGCTTCAATTTCTCCATGTGACCAAGTGCCATACATTGGCCGAAAAGGAACACCCACCCAAAATATTTTGGCTATATGCAACTTCAACATGCAATTCACATTTGCATGTGCAGGGTGGGAAGGCAGTGCCCATGATAGTAGAGTATTTTTATCGGCTTTCCGCAATCCTCAATCGAATTTTCCTAAACCCCCAAATGGTAATTTTTTTTTACCTAAATTGCACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

7.71

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 37 - 92 3.7e-07 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 1 cut(s) 289
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 3 cut(s) 35, 57, 304
AfiI CCNNNNNNNGG 2 cut(s) 164, 323
AgsI TTSAA 3 cut(s) 128, 135, 214
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 166
ApoI RAATTY 3 cut(s) 35, 57, 304
AspLEI GCGC 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 15
BccI CCATC 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 108
BmsI GCATC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 323
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 164, 323
BseSI GKGCMC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 164, 323
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 15, 259
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 23
BssMI GATC 1 cut(s) 28
BstF5I GGATG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 3 cut(s) 82, 220, 237
BstSLI GKGCMC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
CfoI GCGC 1 cut(s) 107
CviAII CATG 6 cut(s) 79, 122, 144, 217, 234, 260
CviJI RGCY 5 cut(s) 22, 131, 168, 200, 284
CviKI_1 RGCY 5 cut(s) 22, 131, 168, 200, 284
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 166
FaeI CATG 6 cut(s) 82, 125, 147, 220, 237, 263
FatI CATG 6 cut(s) 78, 121, 143, 216, 233, 259
FokI GGATG 1 cut(s) 32
GlaI GCGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 168
HhaI GCGC 1 cut(s) 107
Hin1II CATG 6 cut(s) 82, 125, 147, 220, 237, 263
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 32, 72
HpyAV CCTTC 1 cut(s) 242
HpyCH4V TGCA 5 cut(s) 207, 220, 233, 239, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
Hsp92II CATG 6 cut(s) 82, 125, 147, 220, 237, 263
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 36, 225
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 38
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 15, 259
MluCI AATT 7 cut(s) 35, 57, 135, 221, 304, 328, 344
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 2 cut(s) 93, 306
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 28
NlaIII CATG 6 cut(s) 82, 125, 147, 220, 237, 263
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 3 cut(s) 82, 220, 237
PflMI CCANNNNNTGG 1 cut(s) 164
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 232
SaqAI TTAA 1 cut(s) 90
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 15, 259
SetI ASST 2 cut(s) 133, 343
SfaNI GCATC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 7 cut(s) 35, 57, 135, 221, 304, 328, 344
SsiI CCGC 1 cut(s) 289
SspI AATATT 1 cut(s) 193
TaqI TCGA 1 cut(s) 302
TasI AATT 7 cut(s) 35, 57, 135, 221, 304, 328, 344
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 69, 110
TspRI CASTG 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 164
XapI RAATTY 3 cut(s) 35, 57, 304
XceI RCATGY 3 cut(s) 82, 220, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.