Rw6G025480
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000469
Physical Location & Seq
Forward (+)
48821116 .. 48822467
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025480.1

Sequence Viewer

Length: 1095 bp
ATGGACATTTTTGGAGAGGAGGAGGAGGAGGAGATTAACATAATTATTTGCATTTGTGCTTCTGTTATAGAACTCTATTATGAAAAATATATTCACAAAGTCCCTTGTATGAATTCTTCATACACTGGTAACATTTGGTTGATGAAATTGCTAGAAGGGAATGAAAGCCGTTTTCATAACATGTTTCGGATGAACAAAGATGTATTTATAAGATTGTGTGATGAGTTGGAGAATATTTATAAGGTGCAGGGCTCACAGAGAATAAGTGTAGCTGAGACGTTAGGAATGTTTTTGTACACTTTAGGAGAAGGTGCAGGAAACAGAAATGTACAAGAGCGATTTCAATACTCTGGCGAGACTGTTAGTAGGTACTTTAGAGAAATGCTAAATGTGGTATGTGATATGGCAAAAGAATTCATAAAGCCATCTGATCCTGAGTTCAAAAGCATTCCACCAGAAATACTGGGAGATTCTAGATATACGCCTCATTTTAAGGATTGTATTGGAGCTATAGATGGCATACATGTTCCTGCAACTATATCACCTTCGAATCAAGTACCATACATTGGTAGAAAAGGGATACCAACTCAGAATATAATGGTTGTATGTTGGGAAGGCATAACCCACGATACAAGAATATTCCAATCAGCAATTCATAATCCAGCTTTGAAATTTCCTAAACCTCCAAATGGAAAATACTATTTGGTGGATGAAGGATACCCACAAATGAAAGGGTATTTGGGACCATATAAGTGTCAAAGGTATCATCTTTCTGAATTTCGTAGAGGTGCTCAACCAACAGGTTATAAAGAGGTATTCAATCATACACACTCTTCCCTCAGAAGCAATATTTTACGGGACATGCCAAGTTATTCATTCGATAAGCAAGTTAAAATTGTTATAGCGACTATGGCACTTCACAACTATATAAGAAGGTATTCCGTACGTGATTGTGTTTTTGACGAAAGTGAAAACCTTGACATTGAAGAGACTGGGAGAGAGGATGATGCACAAAATGGTCACGGTCATGTTTCCAGAGAAATGGAGGCATTGCGAAACAATATTGCTTCAAGTTTAATGGGTGCACCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

364

Amino Acids

41.86

Weight (kDa)

5.88

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 38 - 133 1.1e-35 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 209, 240, 807
AccB7I CCANNNNNTGG 1 cut(s) 566
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 4 cut(s) 112, 413, 671, 776
AfaI GTAC 5 cut(s) 296, 330, 371, 558, 945
AfiI CCNNNNNNNGG 2 cut(s) 566, 689
AflIII ACRYGT 2 cut(s) 180, 523
AgsI TTSAA 6 cut(s) 344, 442, 670, 820, 986, 1071
AjuI GAANNNNNNNTTGG 4 cut(s) 636, 668, 722, 754
AluBI AGCT 3 cut(s) 272, 509, 665
AluI AGCT 3 cut(s) 272, 509, 665
Alw21I GWGCWC 2 cut(s) 793, 1087
Alw26I GTCTC 3 cut(s) 269, 350, 983
Alw44I GTGCAC 1 cut(s) 1083
AlwI GGATC 1 cut(s) 425
ApaLI GTGCAC 1 cut(s) 1083
ApoI RAATTY 4 cut(s) 112, 413, 671, 776
Asp700I GAANNNNTTC 1 cut(s) 937
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 1 cut(s) 534
AsuII TTCGAA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 1087
BanII GRGCYC 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
Bbv12I GWGCWC 2 cut(s) 793, 1087
BccI CCATC 2 cut(s) 433, 509
BceAI ACGGC 1 cut(s) 153
BciVI GTATCC 2 cut(s) 573, 710
BcoDI GTCTC 3 cut(s) 269, 350, 983
BfaI CTAG 2 cut(s) 152, 474
BfmI CTRYAG 1 cut(s) 510
BfuI GTATCC 2 cut(s) 573, 710
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 1 cut(s) 744
BmrI ACTGGG 2 cut(s) 473, 1002
BmsI GCATC 1 cut(s) 997
BmuI ACTGGG 2 cut(s) 473, 1002
Bpu14I TTCGAA 1 cut(s) 548
BsaAI YACGTR 1 cut(s) 947
Bsc4I CCNNNNNNNGG 2 cut(s) 566, 689
Bse1I ACTGG 3 cut(s) 130, 468, 997
Bse3DI GCAATG 1 cut(s) 1049
BseGI GGATG 3 cut(s) 195, 715, 1009
BseLI CCNNNNNNNGG 2 cut(s) 566, 689
BseMI GCAATG 1 cut(s) 1049
BseMII CTCAG 4 cut(s) 264, 426, 602, 853
BseNI ACTGG 3 cut(s) 130, 468, 997
BseRI GAGGAG 5 cut(s) 32, 35, 38, 41, 44
BseSI GKGCMC 1 cut(s) 1087
BsgI GTGCAG 2 cut(s) 266, 333
BsiHKAI GWGCWC 2 cut(s) 793, 1087
BsiWI CGTACG 1 cut(s) 943
BslFI GGGAC 3 cut(s) 86, 756, 872
BslI CCNNNNNNNGG 2 cut(s) 566, 689
BsmAI GTCTC 3 cut(s) 269, 350, 983
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 3 cut(s) 86, 756, 872
BsmI GAATGC 1 cut(s) 447
Bsp119I TTCGAA 1 cut(s) 548
Bsp1286I GDGCHC 3 cut(s) 254, 793, 1087
Bsp1407I TGTACA 2 cut(s) 294, 328
Bsp143I GATC 1 cut(s) 430
BspCNI CTCAG 4 cut(s) 265, 427, 601, 852
BspLI GGNNCC 1 cut(s) 744
BspPI GGATC 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 1049
BsrGI TGTACA 2 cut(s) 294, 328
BsrI ACTGG 3 cut(s) 130, 468, 997
BssMI GATC 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 361, 1025
Bst6I CTCTTC 2 cut(s) 838, 981
BstAUI TGTACA 2 cut(s) 294, 328
BstBAI YACGTR 1 cut(s) 947
BstBI TTCGAA 1 cut(s) 548
BstDEI CTNAG 4 cut(s) 273, 435, 588, 839
BstF5I GGATG 3 cut(s) 195, 715, 1009
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 3 cut(s) 269, 350, 983
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 1 cut(s) 911
BstNSI RCATGY 3 cut(s) 184, 527, 865
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 1087
BstXI CCANNNNNNTGG 1 cut(s) 1042
BsuI GTATCC 2 cut(s) 573, 710
BtsCI GGATG 3 cut(s) 195, 715, 1009
BtsIMutI CAGTG 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 743
Csp6I GTAC 5 cut(s) 295, 329, 370, 557, 944
CviAII CATG 4 cut(s) 181, 524, 862, 1028
CviJI RGCY 6 cut(s) 168, 252, 272, 424, 509, 665
CviKI_1 RGCY 6 cut(s) 168, 252, 272, 424, 509, 665
CviQI GTAC 5 cut(s) 295, 329, 370, 557, 944
DdeI CTNAG 4 cut(s) 273, 435, 588, 839
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eam1104I CTCTTC 2 cut(s) 838, 981
EarI CTCTTC 2 cut(s) 838, 981
Eco24I GRGCYC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 743
EcoRI GAATTC 2 cut(s) 112, 413
EcoT38I GRGCYC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 4 cut(s) 184, 527, 865, 1031
FaqI GGGAC 3 cut(s) 86, 756, 872
FatI CATG 4 cut(s) 180, 523, 861, 1027
FokI GGATG 3 cut(s) 202, 722, 1016
FriOI GRGCYC 1 cut(s) 254
FspBI CTAG 2 cut(s) 152, 474
Hin1II CATG 4 cut(s) 184, 527, 865, 1031
HinfI GANTC 2 cut(s) 470, 550
HphI GGTGA 1 cut(s) 534
Hpy166II GTNNAC 2 cut(s) 297, 1085
Hpy188I TCNGA 5 cut(s) 189, 430, 591, 775, 842
Hpy188III TCNNGA 3 cut(s) 434, 474, 1035
Hpy8I GTNNAC 2 cut(s) 297, 1085
HpyAV CCTTC 6 cut(s) 149, 302, 555, 608, 707, 927
HpyCH4III ACNGT 2 cut(s) 361, 1025
HpyCH4IV ACGT 2 cut(s) 278, 946
HpyCH4V TGCA 6 cut(s) 51, 247, 314, 533, 1010, 1085
HpyF10VI GCNNNNNNNGC 1 cut(s) 911
HpyF3I CTNAG 4 cut(s) 273, 435, 588, 839
HpySE526I ACGT 2 cut(s) 278, 946
Hsp92II CATG 4 cut(s) 184, 527, 865, 1031
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 506
LweI GCATC 1 cut(s) 997
MaeI CTAG 2 cut(s) 152, 474
MaeII ACGT 2 cut(s) 278, 946
MaeIII GTNAC 2 cut(s) 128, 1019
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 3 cut(s) 108, 825, 998
MhlI GDGCHC 3 cut(s) 254, 793, 1087
MluCI AATT 8 cut(s) 42, 112, 146, 413, 651, 671, 776, 894
MmeI TCCRAC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 937
MseI TTAA 4 cut(s) 36, 492, 891, 1076
MslI CAYNNNNRTG 2 cut(s) 751, 1026
Mva1269I GAATGC 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 911
NdeII GATC 1 cut(s) 430
NlaIII CATG 4 cut(s) 184, 527, 865, 1031
NlaIV GGNNCC 1 cut(s) 744
NmuCI GTSAC 1 cut(s) 1019
NspI RCATGY 3 cut(s) 184, 527, 865
NspV TTCGAA 1 cut(s) 548
PciI ACATGT 2 cut(s) 180, 523
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 2 cut(s) 470, 550
Pfl23II CGTACG 1 cut(s) 943
PflMI CCANNNNNTGG 1 cut(s) 566
Ppu21I YACGTR 1 cut(s) 947
PscI ACATGT 2 cut(s) 180, 523
PsiI TTATAA 3 cut(s) 209, 240, 807
PspLI CGTACG 1 cut(s) 943
PspN4I GGNNCC 1 cut(s) 744
PspPI GGNCC 1 cut(s) 743
RsaI GTAC 5 cut(s) 296, 330, 371, 558, 945
RsaNI GTAC 5 cut(s) 295, 329, 370, 557, 944
RseI CAYNNNNRTG 2 cut(s) 751, 1026
SaqAI TTAA 4 cut(s) 36, 492, 891, 1076
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 1 cut(s) 743
SduI GDGCHC 3 cut(s) 254, 793, 1087
SfaNI GCATC 1 cut(s) 997
SfcI CTRYAG 1 cut(s) 510
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 2 cut(s) 751, 1026
Sse9I AATT 8 cut(s) 42, 112, 146, 413, 651, 671, 776, 894
SspI AATATT 4 cut(s) 235, 639, 850, 1063
SspMI CTAG 2 cut(s) 152, 474
TaaI ACNGT 2 cut(s) 361, 1025
TaiI ACGT 2 cut(s) 281, 949
TaqI TCGA 2 cut(s) 548, 879
TasI AATT 8 cut(s) 42, 112, 146, 413, 651, 671, 776, 894
TatI WGTACW 2 cut(s) 294, 328
TfiI GAWTC 2 cut(s) 470, 550
Tru1I TTAA 4 cut(s) 36, 492, 891, 1076
Tru9I TTAA 4 cut(s) 36, 492, 891, 1076
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 1019
Tsp45I GTSAC 1 cut(s) 1019
TspGWI ACGGA 1 cut(s) 931
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 566
VneI GTGCAC 1 cut(s) 1083
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 4 cut(s) 112, 413, 671, 776
XbaI TCTAGA 1 cut(s) 473
XceI RCATGY 3 cut(s) 184, 527, 865
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 2 cut(s) 152, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.