RchiOBHm_Chr4g0414051
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000469
Physical Location & Seq
Forward (+)
38402678 .. 38403137
460 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38450

Sequence Viewer

Length: 432 bp
ATGAATGGATTTTTGGGACCTTACAAAGGTCCGAGACAACATTTTCAACAATACCGTAGGCAAGAACCAAGAAATGAAAAAGAGGTATTTAACCAAGCACACTCTTCTCTTAGAGGCGTTATAGAACGCACATTTGGAGTTTGGAAAAAAAAGTGGAAGATTTTAAGGGACATGCAAGGTTATTCATTTGAAAAGCAAGTGAAGATTGTCATTGCTACCATGACACTTCATAATTATATACGGATACATGCACATGGTGATAGACATTTTGTCCGCAGTGAAGAAAGAGAAGGTTATGGGTCAAGTGGTGAGATAGAAATGGATGATGATGTAGAAGAAGAATATCATGGTCACGGTGCACAAGAAATGGAAGCAATAAGAAATAACATTACTCAAAGTTTGATGAATGCGCGTAATAACGTGAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

143

Amino Acids

16.91

Weight (kDa)

8.05

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 18 - 78 7.9e-10 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 412
AciI CCGC 1 cut(s) 274
AdeI CACNNNGTG 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 47, 191
AhdI GACNNNNNGTC 1 cut(s) 269
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 117, 149
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 28
Alw44I GTGCAC 1 cut(s) 357
ApaLI GTGCAC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 17, 29
AsuHPI GGTGA 2 cut(s) 269, 320
AvaII GGWCC 2 cut(s) 17, 29
BaeGI GKGCMC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 361
BciVI GTATCC 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 28
BfuI GTATCC 1 cut(s) 237
Bme18I GGWCC 2 cut(s) 17, 29
BmeRI GACNNNNNGTC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 17, 29
BmiI GGNNCC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 210
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 361
BslFI GGGAC 2 cut(s) 30, 182
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 30, 182
BsmI GAATGC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 361
BspACI CCGC 1 cut(s) 274
BspFNI CGCG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 56, 356
Bst6I CTCTTC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 412
BstHHI GCGC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 28
BstNSI RCATGY 2 cut(s) 175, 251
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 1 cut(s) 412
BsuI GTATCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 17, 29
CviAII CATG 5 cut(s) 172, 220, 248, 254, 347
DdeI CTNAG 1 cut(s) 110
DraIII CACNNNGTG 1 cut(s) 257
DriI GACNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 17, 29
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 17
FaeI CATG 5 cut(s) 175, 223, 251, 257, 350
FaqI GGGAC 2 cut(s) 30, 182
FatI CATG 5 cut(s) 171, 219, 247, 253, 346
FokI GGATG 1 cut(s) 335
GlaI GCGC 1 cut(s) 411
HhaI GCGC 1 cut(s) 412
Hin1II CATG 5 cut(s) 175, 223, 251, 257, 350
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HphI GGTGA 2 cut(s) 269, 320
Hpy166II GTNNAC 2 cut(s) 359, 424
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 2 cut(s) 359, 424
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 2 cut(s) 56, 356
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 175, 251, 359
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 5 cut(s) 175, 223, 251, 257, 350
HspAI GCGC 1 cut(s) 410
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 350
MboII GAAGA 6 cut(s) 96, 169, 214, 293, 347, 350
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 1 cut(s) 232
MnlI CCTC 2 cut(s) 76, 107
MseI TTAA 2 cut(s) 90, 164
MslI CAYNNNNRTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 412
MvnI CGCG 1 cut(s) 412
NlaIII CATG 5 cut(s) 175, 223, 251, 257, 350
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 2 cut(s) 175, 251
PctI GAATGC 1 cut(s) 412
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 17, 29
PspPPI RGGWCCY 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 2 cut(s) 90, 164
Sau96I GGNCC 2 cut(s) 17, 29
SduI GDGCHC 1 cut(s) 361
SetI ASST 6 cut(s) 22, 31, 87, 181, 295, 423
SinI GGWCC 2 cut(s) 17, 29
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 274
TaaI ACNGT 2 cut(s) 56, 356
TaiI ACGT 1 cut(s) 423
TasI AATT 1 cut(s) 232
Tru1I TTAA 2 cut(s) 90, 164
Tru9I TTAA 2 cut(s) 90, 164
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 5 cut(s) 17, 90, 174, 218, 419
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 283
VneI GTGCAC 1 cut(s) 357
VpaK11BI GGWCC 2 cut(s) 17, 29
XagI CCTNNNNNAGG 1 cut(s) 24
XceI RCATGY 2 cut(s) 175, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.