FvH4_5g23912
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000469
Physical Location & Seq
Reverse (-)
15212543 .. 15213945
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23912.t1

Sequence Viewer

Length: 1188 bp
ATGTCAGAGAAAGACGACGTTGAGGATGAGATATACATACGAAGCATACAATTTAATACTCTCCTCATTCAACATTATTATGAGAGTTATGTTCATAAAAATCCTTGCATGACATCGTCTCAAACAGGTAATAAATGGGTAATGGAAGTATTACAAGGTCATCCAAGTCGGTGTTATAATGAATTTAGAATGCACAAGGAAGTATTTTATCATTTATGTAGTGACTTGGAGACCGAATTTAGGGCGCTGGGTTCAAATAGAACAAGTCATATTGAAGTAGTGGCATTAATACTAAATATTCTAGGACATGGATGTGGGAATAGGACGACAAGAGAACGGTTTCAACATTCCGGGGAAACCGTTAGTAGGTATTTTGGAAAAGCATTAGATATGTTGTGTTCATATGGTGAGAAAATGATCAAGCCGTTAGATCCAGAATTTGAAAGTGTTGCGCCGGAGATAATGAGGGATAAGAGATACATGCCGCATTTTAAGGATTGCATTGGTGCTATTGATGGAGTGCATATTCCCGCTTCGATATCTCCTCAACATCAAATACCATTTATTGGTAGAAAAGGGATACCAACCCAAAATGTTATGGCGGTGTGTGATTTTAATATGCAATTTACATTTGTATGTGCCGGTTGGGAAGGGTCTGCTCATGATACAAGGGTGTTTCAATCGGTTCTTCGAAATCCCAATTCGAAGTTTCCTAAACCTCCACAAGGAAAATATTATGTCGTTGATGCGGGATACCCACAAATGAATGGATTTTTGGGACCCTATAAAGGTCCAAAACAACATTTTCAAGAATATCGTGGGCAAGGGCCAAGAAATGAAAAAGAGGTATTTAACCAAGCACACTCTTCTCTTAGAGGCGTTATAGAACGCACATTTGGAGCTTGGAAAAAGAAATGGCATATTTTAAGAAGCATGGAAGGTTTTTCATTTAAGAAGCAAGTGAAGATTGTTATTGCAACCATGACTCTTCATAATTATATACGAAGACATGCGAATCATGATAGGCATTTTGACATTGATGAAAATTCGGTTGGCATATCAAATGATGAGATGGAGATGGATGATGCAGAAGAAGAAAATCATGGTCATGTTGCACAAGAAATGGAAGCAATAAGAAAAGAAATTGCTCAAAGTTTGATGAGAGCACGTGGTACCGCAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

396

Amino Acids

45.63

Weight (kDa)

7.07

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 38 - 134 3e-32 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 164 - 311 1e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 171 - 332 1.6e-23 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
Acc65I GGTACC 1 cut(s) 1172
AccB1I GGYRCC 1 cut(s) 1172
AccB7I CCANNNNNTGG 1 cut(s) 566
AciI CCGC 5 cut(s) 485, 531, 602, 749, 1176
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 5 cut(s) 182, 236, 437, 1045, 1180
AcvI CACGTG 1 cut(s) 1169
AfaI GTAC 1 cut(s) 1174
AfiI CCNNNNNNNGG 5 cut(s) 240, 366, 566, 725, 788
AgsI TTSAA 7 cut(s) 71, 255, 275, 344, 443, 680, 809
AjuI GAANNNNNNNTTGG 6 cut(s) 758, 790, 879, 911, 1035, 1067
AluBI AGCT 1 cut(s) 902
AluI AGCT 1 cut(s) 902
Alw21I GWGCWC 1 cut(s) 1168
Alw26I GTCTC 2 cut(s) 123, 224
AlwI GGATC 1 cut(s) 425
AoxI GGCC 1 cut(s) 827
ApoI RAATTY 5 cut(s) 182, 236, 437, 1045, 1180
AseI ATTAAT 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 339
Asp718I GGTACC 1 cut(s) 1172
AspLEI GCGC 2 cut(s) 247, 454
AspS9I GGNCC 3 cut(s) 779, 791, 827
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 419
AsuII TTCGAA 2 cut(s) 691, 704
AvaII GGWCC 2 cut(s) 779, 791
BaeI ACNNNNGTAYC 2 cut(s) 657, 690
BanI GGYRCC 1 cut(s) 1172
BbrPI CACGTG 1 cut(s) 1169
BbsI GAAGAC 1 cut(s) 1012
Bbv12I GWGCWC 1 cut(s) 1168
BccI CCATC 3 cut(s) 509, 1066, 1072
BceAI ACGGC 1 cut(s) 409
BciVI GTATCC 2 cut(s) 573, 746
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 123, 224
BfaI CTAG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 248
BfuI GTATCC 2 cut(s) 573, 746
BisI GCNGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 486
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 2 cut(s) 779, 791
BmgT120I GGNCC 3 cut(s) 779, 791, 827
BmiI GGNNCC 3 cut(s) 780, 781, 1174
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 736, 1075
BpiI GAAGAC 1 cut(s) 1012
Bpu14I TTCGAA 2 cut(s) 691, 704
BpuMI CCSGG 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 1169
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 5 cut(s) 240, 366, 566, 725, 788
Bse118I RCCGGY 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 4 cut(s) 31, 160, 317, 1087
BseLI CCNNNNNNNGG 5 cut(s) 240, 366, 566, 725, 788
BseRI GAGGAG 2 cut(s) 53, 534
BseYI CCCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 829
BshNI GGYRCC 1 cut(s) 1172
BsiHKAI GWGCWC 1 cut(s) 1168
BsiSI CCGG 3 cut(s) 351, 455, 642
BslFI GGGAC 1 cut(s) 792
BslI CCNNNNNNNGG 5 cut(s) 240, 366, 566, 725, 788
BsmAI GTCTC 2 cut(s) 123, 224
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 792
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 829
Bso31I GGTCTC 1 cut(s) 224
Bsp119I TTCGAA 2 cut(s) 691, 704
Bsp1286I GDGCHC 1 cut(s) 1168
Bsp143I GATC 2 cut(s) 417, 430
BspACI CCGC 5 cut(s) 485, 531, 602, 749, 1176
BspANI GGCC 1 cut(s) 829
BspHI TCATGA 2 cut(s) 661, 1018
BspLI GGNNCC 3 cut(s) 780, 781, 1174
BspPI GGATC 1 cut(s) 425
BspT104I TTCGAA 2 cut(s) 691, 704
BspT107I GGYRCC 1 cut(s) 1172
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 2 cut(s) 417, 430
Bst4CI ACNGT 2 cut(s) 339, 361
Bst6I CTCTTC 2 cut(s) 871, 993
BstBAI YACGTR 1 cut(s) 1169
BstBI TTCGAA 2 cut(s) 691, 704
BstDEI CTNAG 1 cut(s) 872
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 4 cut(s) 31, 160, 317, 1087
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 247, 454
BstKTI GATC 2 cut(s) 420, 433
BstMAI GTCTC 2 cut(s) 123, 224
BstMBI GATC 2 cut(s) 417, 430
BstNSI RCATGY 2 cut(s) 484, 1013
BstSCI CCNGG 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 1012
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 2 cut(s) 573, 746
BsuRI GGCC 1 cut(s) 829
BtsCI GGATG 4 cut(s) 31, 160, 317, 1087
CciI TCATGA 2 cut(s) 661, 1018
CfoI GCGC 2 cut(s) 247, 454
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 779, 791, 827
Csp6I GTAC 1 cut(s) 1173
CviJI RGCY 3 cut(s) 424, 829, 902
CviKI_1 RGCY 3 cut(s) 424, 829, 902
CviQI GTAC 1 cut(s) 1173
DdeI CTNAG 1 cut(s) 872
DpnI GATC 2 cut(s) 419, 432
DpnII GATC 2 cut(s) 417, 430
Eam1104I CTCTTC 2 cut(s) 871, 993
EarI CTCTTC 2 cut(s) 871, 993
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 540
Eco47I GGWCC 2 cut(s) 779, 791
Eco72I CACGTG 1 cut(s) 1169
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 779
EcoRV GATATC 1 cut(s) 540
Esp3I CGTCTC 1 cut(s) 123
FaqI GGGAC 1 cut(s) 792
FauI CCCGC 2 cut(s) 538, 742
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 485
FokI GGATG 4 cut(s) 38, 147, 324, 1094
Fsp4HI GCNGC 1 cut(s) 485
FspBI CTAG 1 cut(s) 302
GlaI GCGC 2 cut(s) 246, 453
GluI GCNGC 1 cut(s) 485
GsaI CCCAGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 1 cut(s) 829
HapII CCGG 3 cut(s) 351, 455, 642
HhaI GCGC 2 cut(s) 247, 454
Hin6I GCGC 2 cut(s) 245, 452
HinP1I GCGC 2 cut(s) 245, 452
HinfI GANTC 2 cut(s) 985, 1015
HpaII CCGG 3 cut(s) 351, 455, 642
HphI GGTGA 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 4 cut(s) 434, 662, 809, 1019
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 644, 932
HpyCH4III ACNGT 2 cut(s) 339, 361
HpyCH4IV ACGT 2 cut(s) 18, 1168
HpyCH4V TGCA 8 cut(s) 108, 193, 501, 523, 622, 977, 1088, 1115
HpyF3I CTNAG 1 cut(s) 872
HpySE526I ACGT 2 cut(s) 18, 1168
HspAI GCGC 2 cut(s) 245, 452
KflI GGGWCCC 1 cut(s) 779
KpnI GGTACC 1 cut(s) 1176
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 2 cut(s) 417, 430
LmnI GCTCC 1 cut(s) 899
LpnPI CCDG 6 cut(s) 111, 233, 364, 447, 468, 655
LweI GCATC 2 cut(s) 736, 1075
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 18, 1168
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 419, 432
MboI GATC 2 cut(s) 417, 430
MboII GAAGA 7 cut(s) 680, 858, 976, 980, 1017, 1103, 1106
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 1168
MlyI GAGTC 1 cut(s) 979
MnlI CCTC 7 cut(s) 16, 74, 459, 555, 729, 838, 869
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 8 cut(s) 54, 287, 492, 615, 852, 926, 951, 1186
MslI CAYNNNNRTG 4 cut(s) 78, 312, 634, 1107
MspI CCGG 3 cut(s) 351, 455, 642
MspR9I CCNGG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 352
NdeI CATATG 1 cut(s) 403
NdeII GATC 2 cut(s) 417, 430
NlaIV GGNNCC 3 cut(s) 780, 781, 1174
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 2 cut(s) 484, 1013
NspV TTCGAA 2 cut(s) 691, 704
PagI TCATGA 2 cut(s) 661, 1018
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 1015
PflFI GACNNNGTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 566
PkrI GCNGC 1 cut(s) 486
PleI GAGTC 1 cut(s) 979
PmaCI CACGTG 1 cut(s) 1169
PmlI CACGTG 1 cut(s) 1169
PpsI GAGTC 1 cut(s) 979
Ppu21I YACGTR 1 cut(s) 1169
PpuMI RGGWCCY 1 cut(s) 779
PshBI ATTAAT 1 cut(s) 287
PsiI TTATAA 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 779
PspCI CACGTG 1 cut(s) 1169
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 780, 781, 1174
PspPI GGNCC 3 cut(s) 779, 791, 827
PspPPI RGGWCCY 1 cut(s) 779
PsuI RGATCY 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 115
RsaI GTAC 1 cut(s) 1174
RsaNI GTAC 1 cut(s) 1173
RseI CAYNNNNRTG 4 cut(s) 78, 312, 634, 1107
SaqAI TTAA 8 cut(s) 54, 287, 492, 615, 852, 926, 951, 1186
SatI GCNGC 1 cut(s) 485
Sau3AI GATC 2 cut(s) 417, 430
Sau96I GGNCC 3 cut(s) 779, 791, 827
SchI GAGTC 1 cut(s) 979
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 1168
SfaNI GCATC 2 cut(s) 736, 1075
SfuI TTCGAA 2 cut(s) 691, 704
SinI GGWCC 2 cut(s) 779, 791
SmiMI CAYNNNNRTG 4 cut(s) 78, 312, 634, 1107
SsiI CCGC 5 cut(s) 485, 531, 602, 749, 1176
SspI AATATT 2 cut(s) 298, 734
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 339, 361
TaiI ACGT 2 cut(s) 21, 1171
TaqI TCGA 3 cut(s) 536, 691, 704
TaqII GACCGA 1 cut(s) 248
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 1 cut(s) 1015
Tru1I TTAA 8 cut(s) 54, 287, 492, 615, 852, 926, 951, 1186
Tru9I TTAA 8 cut(s) 54, 287, 492, 615, 852, 926, 951, 1186
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 8 cut(s) 83, 195, 390, 779, 852, 936, 980, 1056
Tth111I GACNNNGTC 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 779, 791
VspI ATTAAT 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 5 cut(s) 182, 236, 437, 1045, 1180
XceI RCATGY 2 cut(s) 484, 1013
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.