Rw6G021080
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000469
Physical Location & Seq
Reverse (-)
42135756 .. 42137124
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G021080.1

Sequence Viewer

Length: 1059 bp
ATGGATGCTTCTGGAGATGAGGAGGAGATAGATCAAATTATATGTCTATGTGCTCGTCTTATTCAAGTCTATCTCGAAAAGTACATTCAGAAAACTCCATGTATGACAAGCTCCCAAACAGTCTTCCTCATGCTTTTAAATGATTTGGAAAAGATAATGGATGGTTCAAGAAACATGAGTATTGTTGAAATGTTGGCTATGTTTCTCTATATTGTGGGACAAGGTCAGACAAATAGGAGTACACAAGAACGTTTTCAACGTTCGGGTGAGACGGTTAGTAGGTATTTTGATATAATGTTAGAGATTTTCTATAATATGGCAAAAGTGCTCATAAAGCCATTGGATCCGGAATTTAGGAGCATCCCACAAGAAATTCTAACTGATTCAAGATACATGCCTCATTTTAAGGATTGCATTGGCGCTATCGATGGTGTTCATGTCCAAGCTTCGATATCTCCATGGATACCCACCCAAAATGTATTGGCTATTTGCAACTTCAACATGCAATTCACATTTGTATGTGCAGGATGGGAAGGCACCGCCCATGATAGTAGAGTATTCTTATCAGCTCTACGCAAACCTCGATCGAATTTTCCTAAACCCCCAAATGGAAAATACTATGTGGTGGATGCAGGATATCCACAAATGAAGGGTTATTTAGGACCATATAAAGGTGAGCGGTACCACCTTCCACATTTTCGTAGAGGTGATGAACCGACCGGTCATAAAGAAATATTCAATCATGCACATTCTTCACTCAGGGGTGTTATTGAGCGTACTTTTGGGGTATGGAAAAAGAAATGGAGTATTTTACGTGATATGCCACATTTTCCTTATAAAAAACAAGTGAAGATAGTTATTGCTACTATGGCTCTTCATAATTACATAAGAAGATATGCTCAACGAGATATTGATTTTGATGAAAGTGGAAATTACTCAAGTGAAGAGACTAGTGAAGAGATGGAGGATAATGAACATGATGGAGATGGTCCAGGAAGACAAGAAATGGAGGTGTTAAGAAATGCAATTGCACAAAGTCTAATGAATGCATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

352

Amino Acids

40.61

Weight (kDa)

6.14

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 38 - 103 4.2e-19 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 135 - 292 3.3e-09 Transposase DDE domain
DDE_Tnp_4 PF13359 157 - 294 4.2e-20 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
Acc65I GGTACC 1 cut(s) 681
AccB1I GGYRCC 2 cut(s) 536, 681
AccBSI CCGCTC 1 cut(s) 679
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 2 cut(s) 540, 679
AclI AACGTT 2 cut(s) 250, 259
AclWI GGATC 2 cut(s) 338, 351
AcsI RAATTY 3 cut(s) 350, 372, 589
AfaI GTAC 4 cut(s) 83, 241, 683, 778
AfiI CCNNNNNNNGG 2 cut(s) 608, 671
AgeI ACCGGT 1 cut(s) 719
AgsI TTSAA 7 cut(s) 65, 168, 188, 257, 387, 499, 739
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 1 cut(s) 991
AluBI AGCT 3 cut(s) 111, 446, 569
AluI AGCT 3 cut(s) 111, 446, 569
Alw21I GWGCWC 2 cut(s) 55, 330
Alw26I GTCTC 2 cut(s) 263, 941
AlwI GGATC 2 cut(s) 338, 351
Aor13HI TCCGGA 1 cut(s) 346
ApoI RAATTY 3 cut(s) 350, 372, 589
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AsiGI ACCGGT 1 cut(s) 719
Asp700I GAANNNNTTC 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 681
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 2 cut(s) 662, 989
AsuHPI GGTGA 3 cut(s) 278, 686, 719
AvaII GGWCC 2 cut(s) 662, 989
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 2 cut(s) 536, 681
BbsI GAAGAC 2 cut(s) 115, 1003
Bbv12I GWGCWC 2 cut(s) 55, 330
BccI CCATC 6 cut(s) 155, 422, 522, 955, 974, 980
BciT130I CCWGG 1 cut(s) 993
BciVI GTATCC 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 263, 941
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 1 cut(s) 951
BfoI RGCGCY 1 cut(s) 423
BfuI GTATCC 1 cut(s) 456
Bme1390I CCNGG 1 cut(s) 993
Bme18I GGWCC 2 cut(s) 662, 989
BmgT120I GGNCC 2 cut(s) 662, 989
BmiI GGNNCC 3 cut(s) 345, 538, 683
BmrFI CCNGG 1 cut(s) 993
BmsI GCATC 2 cut(s) 369, 619
BpiI GAAGAC 2 cut(s) 115, 1003
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 922
Bsa29I ATCGAT 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 815
BsaJI CCNNGG 1 cut(s) 458
BsaWI WCCGGW 2 cut(s) 346, 719
Bsc4I CCNNNNNNNGG 2 cut(s) 608, 671
Bse118I RCCGGY 1 cut(s) 719
BseAI TCCGGA 1 cut(s) 346
BseBI CCWGG 1 cut(s) 993
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 5 cut(s) 10, 166, 360, 533, 634
BseLI CCNNNNNNNGG 2 cut(s) 608, 671
BseMII CTCAG 1 cut(s) 772
BseRI GAGGAG 2 cut(s) 35, 38
BsgI GTGCAG 1 cut(s) 543
Bsh1285I CGRYCG 2 cut(s) 587, 720
BshNI GGYRCC 2 cut(s) 536, 681
BshTI ACCGGT 1 cut(s) 719
BshVI ATCGAT 1 cut(s) 426
BsiEI CGRYCG 2 cut(s) 587, 720
BsiHKAI GWGCWC 2 cut(s) 55, 330
BsiSI CCGG 2 cut(s) 347, 720
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 608, 671
BsmAI GTCTC 2 cut(s) 263, 941
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 1051
Bsp1286I GDGCHC 2 cut(s) 55, 330
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 31, 343, 584
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 2 cut(s) 540, 679
BspCNI CTCAG 1 cut(s) 771
BspDI ATCGAT 1 cut(s) 426
BspEI TCCGGA 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 345, 538, 683
BspPI GGATC 2 cut(s) 338, 351
BspQI GCTCTTC 1 cut(s) 879
BspT107I GGYRCC 2 cut(s) 536, 681
BsrBI CCGCTC 1 cut(s) 679
BsrFI RCCGGY 1 cut(s) 719
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 3 cut(s) 31, 343, 584
BssT1I CCWWGG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 993
Bst4CI ACNGT 2 cut(s) 121, 274
Bst6I CTCTTC 3 cut(s) 879, 939, 951
BstBAI YACGTR 1 cut(s) 815
BstDEI CTNAG 2 cut(s) 758, 1056
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 5 cut(s) 10, 166, 360, 533, 634
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 3 cut(s) 34, 346, 587
BstMAI GTCTC 2 cut(s) 263, 941
BstMBI GATC 3 cut(s) 31, 343, 584
BstMCI CGRYCG 2 cut(s) 587, 720
BstMWI GCNNNNNNNGC 2 cut(s) 334, 869
BstNI CCWGG 1 cut(s) 993
BstNSI RCATGY 2 cut(s) 397, 505
BstSCI CCNGG 1 cut(s) 991
BstV2I GAAGAC 2 cut(s) 115, 1003
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
Bsu15I ATCGAT 1 cut(s) 426
BsuI GTATCC 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 5 cut(s) 10, 166, 360, 533, 634
CfoI GCGC 1 cut(s) 422
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 2 cut(s) 662, 989
ClaI ATCGAT 1 cut(s) 426
Csp6I GTAC 4 cut(s) 82, 240, 682, 777
CspAI ACCGGT 1 cut(s) 719
CviJI RGCY 7 cut(s) 111, 197, 337, 446, 485, 569, 872
CviKI_1 RGCY 7 cut(s) 111, 197, 337, 446, 485, 569, 872
CviQI GTAC 4 cut(s) 82, 240, 682, 777
DdeI CTNAG 2 cut(s) 758, 1056
DpnI GATC 3 cut(s) 33, 345, 586
DpnII GATC 3 cut(s) 31, 343, 584
DraI TTTAAA 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 879, 939, 951
EarI CTCTTC 3 cut(s) 879, 939, 951
Eco130I CCWWGG 1 cut(s) 458
Eco32I GATATC 2 cut(s) 453, 638
Eco47I GGWCC 2 cut(s) 662, 989
EcoRII CCWGG 1 cut(s) 991
EcoRV GATATC 2 cut(s) 453, 638
EcoT14I CCWWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 1051
ErhI CCWWGG 1 cut(s) 458
Esp3I CGTCTC 1 cut(s) 263
FaqI GGGAC 1 cut(s) 231
FokI GGATG 5 cut(s) 17, 173, 347, 540, 641
FspBI CTAG 1 cut(s) 951
GlaI GCGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 423
HapII CCGG 2 cut(s) 347, 720
HhaI GCGC 1 cut(s) 422
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 1 cut(s) 383
HpaII CCGG 2 cut(s) 347, 720
HphI GGTGA 3 cut(s) 278, 686, 719
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 90, 228
Hpy188III TCNNGA 5 cut(s) 12, 74, 168, 347, 387
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 527, 643, 698
HpyCH4III ACNGT 2 cut(s) 121, 274
HpyCH4IV ACGT 3 cut(s) 250, 259, 814
HpyCH4V TGCA 9 cut(s) 414, 492, 505, 524, 632, 746, 1025, 1031, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 334, 869
HpyF3I CTNAG 2 cut(s) 758, 1056
HpySE526I ACGT 3 cut(s) 250, 259, 814
HspAI GCGC 1 cut(s) 420
Kpn2I TCCGGA 1 cut(s) 346
KpnI GGTACC 1 cut(s) 685
Kzo9I GATC 3 cut(s) 31, 343, 584
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 2 cut(s) 116, 357
LpnPI CCDG 7 cut(s) 360, 510, 618, 733, 745, 978, 1005
LweI GCATC 2 cut(s) 369, 619
MaeI CTAG 1 cut(s) 951
MaeII ACGT 3 cut(s) 250, 259, 814
MalI GATC 3 cut(s) 33, 345, 586
MbiI CCGCTC 1 cut(s) 679
MboI GATC 3 cut(s) 31, 343, 584
MboII GAAGA 8 cut(s) 115, 744, 862, 866, 903, 956, 968, 1008
MfeI CAATTG 1 cut(s) 1026
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 55, 330
MluCI AATT 8 cut(s) 36, 350, 372, 506, 589, 880, 931, 1026
MnlI CCTC 8 cut(s) 13, 16, 137, 408, 591, 698, 958, 1003
Mph1103I ATGCAT 1 cut(s) 1051
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 3 cut(s) 137, 405, 1016
MslI CAYNNNNRTG 1 cut(s) 517
MspI CCGG 2 cut(s) 347, 720
MspR9I CCNGG 1 cut(s) 993
MunI CAATTG 1 cut(s) 1026
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 1 cut(s) 993
MwoI GCNNNNNNNGC 2 cut(s) 334, 869
NcoI CCATGG 1 cut(s) 458
NdeII GATC 3 cut(s) 31, 343, 584
NlaIV GGNNCC 3 cut(s) 345, 538, 683
NsiI ATGCAT 1 cut(s) 1051
NspI RCATGY 2 cut(s) 397, 505
PciSI GCTCTTC 1 cut(s) 879
PcsI WCGNNNNNNNCGW 2 cut(s) 256, 580
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 991
PinAI ACCGGT 1 cut(s) 719
Ple19I CGATCG 1 cut(s) 587
Ppu21I YACGTR 1 cut(s) 815
PsiI TTATAA 1 cut(s) 837
Psp1406I AACGTT 2 cut(s) 250, 259
Psp6I CCWGG 1 cut(s) 991
PspGI CCWGG 1 cut(s) 991
PspN4I GGNNCC 3 cut(s) 345, 538, 683
PspPI GGNCC 2 cut(s) 662, 989
PsuI RGATCY 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 222
PvuI CGATCG 1 cut(s) 587
RsaI GTAC 4 cut(s) 83, 241, 683, 778
RsaNI GTAC 4 cut(s) 82, 240, 682, 777
RseI CAYNNNNRTG 1 cut(s) 517
SapI GCTCTTC 1 cut(s) 879
SaqAI TTAA 3 cut(s) 137, 405, 1016
Sau3AI GATC 3 cut(s) 31, 343, 584
Sau96I GGNCC 2 cut(s) 662, 989
ScrFI CCNGG 1 cut(s) 993
SduI GDGCHC 2 cut(s) 55, 330
SfaNI GCATC 2 cut(s) 369, 619
SinI GGWCC 2 cut(s) 662, 989
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 937
SmoI CTYRAG 1 cut(s) 937
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 8 cut(s) 36, 350, 372, 506, 589, 880, 931, 1026
SsiI CCGC 2 cut(s) 540, 679
SspI AATATT 1 cut(s) 735
SspMI CTAG 1 cut(s) 951
StyD4I CCNGG 1 cut(s) 991
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 121, 274
TaiI ACGT 3 cut(s) 253, 262, 817
TaqI TCGA 5 cut(s) 75, 426, 449, 583, 587
TasI AATT 8 cut(s) 36, 350, 372, 506, 589, 880, 931, 1026
TatI WGTACW 2 cut(s) 81, 239
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 137, 405, 1016
Tru9I TTAA 3 cut(s) 137, 405, 1016
TspDTI ATGAA 7 cut(s) 425, 662, 726, 866, 936, 987, 1058
Tth111I GACNNNGTC 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 662, 989
XapI RAATTY 3 cut(s) 350, 372, 589
XceI RCATGY 2 cut(s) 397, 505
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 951
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.