Prupe.6G192900_v2.0.a1
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000469
Physical Location & Seq
Reverse (-)
20024205 .. 20025468
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G192900.1

Sequence Viewer

Length: 684 bp
ACTCCTTGCCGTAATTCAATTTTATCGGGGCATGAATATGTTCAAGAGTTGTTAAATGGAAATCCGGATAGAATTTATGACTCATTTCGCATGGACAAACATGTATTTTTAAGGTTATGTCAAACTCTTGAGACTTTAGATCTTTTACACTATGATAGACATGTGGGTTTTCAAGAAGCAGTTCATATTTTCTTATTTATAGTTTCTCATAATATTCGTATGCGAGTTGAGGCTGAGCGTTTTCAACGATCAAAAGACACAATTCACAGACAATTTAAGCATGTGTTGACAGCTTTATGTGGATTATCACCATGTATTATATGCCCAAGTAGTAAAGGGGAAACACCGCCCGAAATTTTGAATAACCCAAAGTATTATCCTTATTTTGAGCGGTTTTTTGGTGTGTTGAAAGCTCGTTTTCCAATTTTCAAATTGATGCCCAATTATCTTCCACATAGGCAACGACGTATCCCTATTGCATGTTGTGTGTTACATAATTTTATCCAAAGAGAAGCACGTCGTGATAGGCTGTTCGAAGAGTTTCAAGTAGATGACATCATTGTTGAGGGTGAAGATATGGCTACACCAAATTTAGATATGTCTCCAGAAAATATTGCACAAATGACCAACATTAGAGATAAGATTGCACAAGATTTGTGGCGTGATTTCACCCAAGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

228

Amino Acids

26.9

Weight (kDa)

6.76

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 391
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 2 cut(s) 347, 391
AcsI RAATTY 3 cut(s) 72, 354, 589
AdeI CACNNNGTG 1 cut(s) 521
AflIII ACRYGT 2 cut(s) 100, 160
AgsI TTSAA 8 cut(s) 18, 44, 173, 245, 361, 409, 430, 545
AjiI CACGTC 1 cut(s) 518
AluBI AGCT 2 cut(s) 293, 413
AluI AGCT 2 cut(s) 293, 413
Alw26I GTCTC 2 cut(s) 125, 606
Aor13HI TCCGGA 1 cut(s) 64
ApoI RAATTY 3 cut(s) 72, 354, 589
Asp700I GAANNNNTTC 3 cut(s) 39, 180, 540
AsuHPI GGTGA 3 cut(s) 300, 581, 661
AsuII TTCGAA 1 cut(s) 534
BciVI GTATCC 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 125, 606
BfuI GTATCC 1 cut(s) 479
BglII AGATCT 1 cut(s) 139
BlpI GCTNAGC 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 518
BmsI GCATC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 64
BseMII CTCAG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 65
BsmAI GTCTC 2 cut(s) 125, 606
Bsp119I TTCGAA 1 cut(s) 534
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 139, 248
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 2 cut(s) 347, 391
BspCNI CTCAG 1 cut(s) 226
BspEI TCCGGA 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 534
BsrBI CCGCTC 1 cut(s) 391
BssMI GATC 2 cut(s) 139, 248
Bst6I CTCTTC 1 cut(s) 531
BstBI TTCGAA 1 cut(s) 534
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 2 cut(s) 142, 251
BstMAI GTCTC 2 cut(s) 125, 606
BstMBI GATC 2 cut(s) 139, 248
BstNSI RCATGY 4 cut(s) 104, 164, 284, 483
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 479
BtrI CACGTC 1 cut(s) 518
CspCI CAANNNNNGTGG 2 cut(s) 638, 673
CviAII CATG 7 cut(s) 32, 91, 101, 161, 281, 312, 480
CviJI RGCY 5 cut(s) 233, 293, 413, 529, 581
CviKI_1 RGCY 5 cut(s) 233, 293, 413, 529, 581
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 141, 250
DpnII GATC 2 cut(s) 139, 248
DraIII CACNNNGTG 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
FaeI CATG 7 cut(s) 35, 94, 104, 164, 284, 315, 483
FatI CATG 7 cut(s) 31, 90, 100, 160, 280, 311, 479
GsuI CTGGAG 1 cut(s) 588
HapII CCGG 1 cut(s) 65
Hin1II CATG 7 cut(s) 35, 94, 104, 164, 284, 315, 483
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 80, 677
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 300, 581, 661
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 7 cut(s) 44, 65, 128, 173, 521, 605, 681
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 2 cut(s) 468, 522
HpyCH4IV ACGT 2 cut(s) 466, 517
HpyCH4V TGCA 3 cut(s) 479, 617, 647
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 2 cut(s) 466, 517
Hsp92II CATG 7 cut(s) 35, 94, 104, 164, 284, 315, 483
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 139, 248
LpnPI CCDG 2 cut(s) 78, 618
LweI GCATC 1 cut(s) 426
MaeII ACGT 2 cut(s) 466, 517
MaeIII GTNAC 1 cut(s) 489
MalI GATC 2 cut(s) 141, 250
MbiI CCGCTC 1 cut(s) 391
MboI GATC 2 cut(s) 139, 248
MboII GAAGA 3 cut(s) 440, 548, 584
MflI RGATCY 1 cut(s) 139
MlyI GAGTC 2 cut(s) 74, 671
MnlI CCTC 2 cut(s) 223, 559
MroI TCCGGA 1 cut(s) 64
MroXI GAANNNNTTC 3 cut(s) 39, 180, 540
MseI TTAA 3 cut(s) 53, 110, 276
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 65
NdeII GATC 2 cut(s) 139, 248
NlaIII CATG 7 cut(s) 35, 94, 104, 164, 284, 315, 483
NspI RCATGY 4 cut(s) 104, 164, 284, 483
NspV TTCGAA 1 cut(s) 534
PciI ACATGT 2 cut(s) 100, 160
PdmI GAANNNNTTC 3 cut(s) 39, 180, 540
PleI GAGTC 2 cut(s) 74, 671
PpsI GAGTC 2 cut(s) 74, 671
PscI ACATGT 2 cut(s) 100, 160
PsuI RGATCY 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 3 cut(s) 53, 110, 276
Sau3AI GATC 2 cut(s) 139, 248
SchI GAGTC 2 cut(s) 74, 671
SetI ASST 5 cut(s) 116, 295, 415, 469, 520
SfaNI GCATC 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SsiI CCGC 2 cut(s) 347, 391
SspI AATATT 2 cut(s) 214, 613
TaiI ACGT 2 cut(s) 469, 520
TaqI TCGA 1 cut(s) 534
Tru1I TTAA 3 cut(s) 53, 110, 276
Tru9I TTAA 3 cut(s) 53, 110, 276
TspDTI ATGAA 2 cut(s) 48, 173
XapI RAATTY 3 cut(s) 72, 354, 589
XceI RCATGY 4 cut(s) 104, 164, 284, 483
XmnI GAANNNNTTC 3 cut(s) 39, 180, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.