FvH4_4g30624
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000469
Physical Location & Seq
Reverse (-)
30168446 .. 30170470
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30624.t1

Sequence Viewer

Length: 858 bp
ATGGACATTTTGGAGGAGGAGGAAGAGGAGATTAGTAGAATTGTCTGCATTTGTGCTTCTATGATAGAATTGTATCATGAAAAGTATATTCATAAGGTCCCTTGTATGAATTCTTTATACACTGGTAACATTTGGGTGATGGAATTACAATCAGGGAATGACACTCGTTGTCATAACATGTTCCGGATGAACAAAGATGTATTCTTTAAATTGTGTGATGATTTGAAGAATATTTATAAGGTGAAAGCTTCTCGGAGAATAAGTGTGGCTGAGAAGGTGGCAATGTTTTTGTACACTTTAGGAGGAGGTGAAGCAAACAGAAGTGTACAAGAGCGATTTCAACACTCTGGCGAGACGGTTAGTAGATACTTTAATAAAATGCTCAATGTGATATGTGATGTCATGGCAAAAGATTTCATCAAGCCATCAGATCCCGAGTTCAAAAGCACTCCACCTGAAATACTTCGTGATTCTAGGTATATGCCTCACTTTAAGGATTGTATTGAAGCTATATATGGCGTGCATGTTCATGCAACTATATCACCATCAGATCAAGTACCATATATTGGCAGAAAAGGAATACCGACTCAAAATATAATGGCAGTATGCAACTTTGACATGCAATTTACATTTGCATGTGCAAGTTGGGAAGGCACTGCCCACGATGCAAGAATATTCCAATCAGTAATTCACAATCTAACTTTGAACTTTCCTAAACCTCCAAGTGGAAAATACTATTTGGTGGATGCAGGATACCCACAAATGAAAGGGTATTTGGGACCATACAAGTGTCAAAGGTATCATCTTCCTGAATTTCGCAGAGGTACTCAACCAATAGGTTATAAAGAGCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

286

Amino Acids

32.95

Weight (kDa)

7.57

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 38 - 132 2.3e-38 Domain of unknown function (DUF8040)
DDE_Tnp_4 PF13359 173 - 264 2.7e-08 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 237, 843
AccB7I CCANNNNNTGG 1 cut(s) 566
AccIII TCCGGA 1 cut(s) 183
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 2 cut(s) 109, 812
AfaI GTAC 4 cut(s) 293, 327, 558, 826
AfiI CCNNNNNNNGG 2 cut(s) 566, 725
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 5 cut(s) 226, 341, 442, 506, 706
AjuI GAANNNNNNNTTGG 4 cut(s) 672, 704, 758, 790
AluBI AGCT 2 cut(s) 248, 509
AluI AGCT 2 cut(s) 248, 509
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 425
Ama87I CYCGRG 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 183
ApoI RAATTY 2 cut(s) 109, 812
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 97, 779
AsuHPI GGTGA 4 cut(s) 148, 253, 320, 534
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 2 cut(s) 97, 779
BccI CCATC 3 cut(s) 133, 433, 553
BciVI GTATCC 1 cut(s) 746
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 474
BfuI GTATCC 1 cut(s) 746
Bme18I GGWCC 2 cut(s) 97, 779
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 2 cut(s) 97, 779
BmiI GGNNCC 2 cut(s) 99, 780
BmsI GCATC 2 cut(s) 655, 736
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 566, 725
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 183
BseGI GGATG 2 cut(s) 192, 751
BseLI CCNNNNNNNGG 2 cut(s) 566, 725
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 4 cut(s) 29, 32, 41, 318
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 2 cut(s) 83, 792
BslI CCNNNNNNNGG 2 cut(s) 566, 725
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 83, 792
BsoBI CYCGRG 1 cut(s) 434
Bsp13I TCCGGA 1 cut(s) 183
Bsp1407I TGTACA 2 cut(s) 291, 325
Bsp143I GATC 2 cut(s) 430, 550
BspCNI CTCAG 1 cut(s) 262
BspEI TCCGGA 1 cut(s) 183
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 99, 780
BspPI GGATC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 288
BsrGI TGTACA 2 cut(s) 291, 325
BsrI ACTGG 1 cut(s) 127
BssMI GATC 2 cut(s) 430, 550
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 2 cut(s) 291, 325
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 192, 751
BstKTI GATC 2 cut(s) 433, 553
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 2 cut(s) 430, 550
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNSI RCATGY 4 cut(s) 181, 527, 622, 639
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 746
BtsCI GGATG 2 cut(s) 192, 751
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 120, 654
Cac8I GCNNGC 1 cut(s) 521
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 97, 779
Csp6I GTAC 4 cut(s) 292, 326, 557, 825
CviAII CATG 7 cut(s) 77, 178, 403, 524, 530, 619, 636
CviJI RGCY 4 cut(s) 248, 269, 424, 509
CviKI_1 RGCY 4 cut(s) 248, 269, 424, 509
CviQI GTAC 4 cut(s) 292, 326, 557, 825
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 432, 552
DpnII GATC 2 cut(s) 430, 550
DraI TTTAAA 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 97, 779
Eco88I CYCGRG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 7 cut(s) 80, 181, 406, 527, 533, 622, 639
FaqI GGGAC 2 cut(s) 83, 792
FatI CATG 7 cut(s) 76, 177, 402, 523, 529, 618, 635
FokI GGATG 2 cut(s) 199, 758
FspBI CTAG 1 cut(s) 474
HapII CCGG 1 cut(s) 184
Hin1II CATG 7 cut(s) 80, 181, 406, 527, 533, 622, 639
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 2 cut(s) 470, 586
HpaII CCGG 1 cut(s) 184
HphI GGTGA 4 cut(s) 148, 253, 320, 534
Hpy166II GTNNAC 2 cut(s) 294, 326
Hpy188I TCNGA 3 cut(s) 255, 430, 550
Hpy188III TCNNGA 5 cut(s) 77, 184, 434, 467, 809
Hpy8I GTNNAC 2 cut(s) 294, 326
HpyAV CCTTC 2 cut(s) 268, 644
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 9 cut(s) 48, 523, 533, 609, 622, 635, 641, 668, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 7 cut(s) 80, 181, 406, 527, 533, 622, 639
Kpn2I TCCGGA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 430, 550
LpnPI CCDG 7 cut(s) 108, 138, 197, 333, 468, 735, 822
LweI GCATC 2 cut(s) 655, 736
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 432, 552
MboI GATC 2 cut(s) 430, 550
MboII GAAGA 3 cut(s) 35, 238, 797
MflI RGATCY 1 cut(s) 430
MluCI AATT 8 cut(s) 39, 68, 109, 143, 209, 623, 687, 812
MlyI GAGTC 1 cut(s) 580
MnlI CCTC 9 cut(s) 7, 10, 13, 19, 296, 299, 495, 729, 815
MroI TCCGGA 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 3 cut(s) 207, 372, 492
MslI CAYNNNNRTG 4 cut(s) 134, 528, 634, 787
MspI CCGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 665
NdeII GATC 2 cut(s) 430, 550
NlaIII CATG 7 cut(s) 80, 181, 406, 527, 533, 622, 639
NlaIV GGNNCC 2 cut(s) 99, 780
NspI RCATGY 4 cut(s) 181, 527, 622, 639
PagI TCATGA 1 cut(s) 76
PciI ACATGT 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 470
PflMI CCANNNNNTGG 1 cut(s) 566
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 97
PscI ACATGT 1 cut(s) 177
PsiI TTATAA 2 cut(s) 237, 843
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 99, 780
PspPI GGNCC 2 cut(s) 97, 779
PspPPI RGGWCCY 1 cut(s) 97
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 4 cut(s) 293, 327, 558, 826
RsaNI GTAC 4 cut(s) 292, 326, 557, 825
RseI CAYNNNNRTG 4 cut(s) 134, 528, 634, 787
SaqAI TTAA 3 cut(s) 207, 372, 492
Sau3AI GATC 2 cut(s) 430, 550
Sau96I GGNCC 2 cut(s) 97, 779
SchI GAGTC 1 cut(s) 580
SfaNI GCATC 2 cut(s) 655, 736
SinI GGWCC 2 cut(s) 97, 779
SmiMI CAYNNNNRTG 4 cut(s) 134, 528, 634, 787
Sse9I AATT 8 cut(s) 39, 68, 109, 143, 209, 623, 687, 812
SspI AATATT 2 cut(s) 232, 675
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 358
TasI AATT 8 cut(s) 39, 68, 109, 143, 209, 623, 687, 812
TatI WGTACW 2 cut(s) 291, 325
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 3 cut(s) 207, 372, 492
Tru9I TTAA 3 cut(s) 207, 372, 492
TscAI CASTG 2 cut(s) 127, 661
TspDTI ATGAA 7 cut(s) 80, 93, 122, 203, 406, 518, 779
TspRI CASTG 2 cut(s) 127, 661
Van91I CCANNNNNTGG 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 97, 779
XapI RAATTY 2 cut(s) 109, 812
XceI RCATGY 4 cut(s) 181, 527, 622, 639
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.