Rmu_sc0006935.1_g000005
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006935.1
OG0000469
Physical Location & Seq
Reverse (-)
15607 .. 22806
7200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006935.1_g000005.1.cds

Sequence Viewer

Length: 1728 bp
atgatggctgtttatgataacatgtttaggggtagcatagccctaggtcactttgtcatgattccctcagctactatagatattgaagaagtggtggaggattctgagcataatgtaatttctggagatgatgaggagatagaccagcaagataatgaaccaagagggaaaaagagaacaactgggaatgaaagtaggtgttataaccagtttaggatggataaaaactgcttattaatgctattgaatgatgttgataagatgttgaagggttcaaaaaacaaaagtaccgctgaaatgttagctatgtctctatatattttgggacaaggtcaaacaaataggaatacacaagagcgttttcaacgttccggtgagacggttagtaaatattttgatataatgctcaagattttctataatatggcgaaagtgctcataaagccggaggatcccgaatttacgagcatcccaaatgaaattctaaatgactcaagatacatgcctcattttaaggattgtattggcgctattgatggtgttcatgttcaagtttcgatttctccatgtgaccaagtgccatacattggccgaaaaggaacacccacccaaaatattttggctatatgcaacttcaacatgcaattcacatttgcatgtgcagggtgggaaggcactgcccatgacagtagagtattcttatcggcttttcgcaatcctcgatcgaattttcctaaacccccaaatgagacaggtattgctgccatcattctcggcggcgatttcctacatttgggggttgaaggaacgctttctgattcacgaagaaaaaattggatttttgtcttccagttcaaggaatatgagacgaaggatcatgtggcggtgaaagggttgcgcatggctatgggcaatgagcgtgctcttacgttgcttgggaacgccttggggctgtttgtagggtacaatcaggcggagttgcaaaggaaagaccccgtacaacgaatctgggttgtgcacgacgtcgcgctggtggtggcggacatggttgaaattgggccacctgggcggtctgagatacggccggcgattggtcggggatcgcagctgcggatggaggaggctcaagcagatgggtcggtggctgtagacgggttggcgtctagactgcagggcatggcatatccggaatacttggcgggaaactctaatttgattttagatttccctgttgggtcgggcggtagtggaccggggagcaggggtcgagcccgacagttggttctaggggtgcgtaaatggagccatggtgagtggagcaaggagaagcggctaaagcctagcttggcagtgatccctcgtgaatttcatcttgctgaacttgtggaagtccctgttattattgggaagattccaaagaagaaaggtagccctaagggtcacaagaacaagaagcccaagcgaaggcggcgaggtacatgtggtgtatcacaagccaggtcggtggttctgtggggagacagactggatctagacgcgagtaacgaactgatggtgttttgggaaggcaacgtggcttctgatagcggtgcggcttgtaatggcgacgctgcttctgatgtggaccagttttcttgggtacagaagggcagctatggtcctttgaagaagacagtcgccagaattgcagtggcggtgttgttgctcaaaggggtttcttgggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

575

Amino Acids

63.66

Weight (kDa)

8.81

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AatII GACGTC 1 cut(s) 1026
Acc16I TGCGCA 1 cut(s) 899
AccB7I CCANNNNNTGG 1 cut(s) 587
AccI GTMKAC 1 cut(s) 1149
AccII CGCG 2 cut(s) 1028, 1538
AccIII TCCGGA 1 cut(s) 1186
AclI AACGTT 1 cut(s) 367
AclWI GGATC 6 cut(s) 446, 459, 882, 1108, 1348, 1536
AcoI YGGCCR 2 cut(s) 589, 1082
AcsI RAATTY 4 cut(s) 458, 480, 727, 1364
AcyI GRCGYC 2 cut(s) 1023, 1160
AfaI GTAC 5 cut(s) 289, 965, 999, 1477, 1641
AfiI CCNNNNNNNGG 6 cut(s) 587, 793, 856, 1091, 1279, 1464
AflIII ACRYGT 2 cut(s) 21, 1478
AjnI CCWGG 2 cut(s) 1063, 1496
AjuI GAANNNNNNNTTGG 2 cut(s) 817, 849
AluBI AGCT 5 cut(s) 71, 305, 1108, 1344, 1653
AluI AGCT 5 cut(s) 71, 305, 1108, 1344, 1653
Alw21I GWGCWC 3 cut(s) 438, 925, 1020
Alw26I GTCTC 5 cut(s) 315, 371, 743, 860, 1512
Alw44I GTGCAC 1 cut(s) 1016
AlwI GGATC 6 cut(s) 446, 459, 882, 1108, 1348, 1536
Aor13HI TCCGGA 1 cut(s) 1186
AoxI GGCC 3 cut(s) 589, 1058, 1082
ApaLI GTGCAC 1 cut(s) 1016
ApeKI GCWGC 5 cut(s) 761, 1105, 1108, 1610, 1650
ApoI RAATTY 4 cut(s) 458, 480, 727, 1364
AseI ATTAAT 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 811
AspA2I CCTAGG 1 cut(s) 43
AspLEI GCGC 3 cut(s) 530, 900, 1030
AspS9I GGNCC 4 cut(s) 1058, 1250, 1624, 1658
AsuC2I CCSGG 1 cut(s) 1254
AsuHPI GGTGA 3 cut(s) 386, 898, 1322
AvaII GGWCC 3 cut(s) 1250, 1624, 1658
AvrII CCTAGG 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 1434
BaeGI GKGCMC 1 cut(s) 1020
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BamHI GGATCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 1273
BauI CACGAG 1 cut(s) 1359
BbsI GAAGAC 2 cut(s) 838, 1676
Bbv12I GWGCWC 3 cut(s) 438, 925, 1020
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 5 cut(s) 748, 1095, 1117, 1597, 1662
BccI CCATC 6 cut(s) 211, 530, 773, 1108, 1127, 1546
BceAI ACGGC 1 cut(s) 1097
BcgI CGANNNNNNTGC 2 cut(s) 1119, 1153
BciT130I CCWGG 2 cut(s) 1065, 1498
BcnI CCSGG 1 cut(s) 1254
BcoDI GTCTC 5 cut(s) 315, 371, 743, 860, 1512
BfaI CTAG 5 cut(s) 44, 1164, 1286, 1341, 1532
BfmI CTRYAG 3 cut(s) 75, 1146, 1169
BfoI RGCGCY 1 cut(s) 531
BglI GCCNNNNNGGC 1 cut(s) 1066
BisI GCNGC 9 cut(s) 762, 778, 1106, 1109, 1331, 1469, 1593, 1611, 1651
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 9 cut(s) 763, 779, 1107, 1110, 1332, 1470, 1594, 1612, 1652
Bme1390I CCNGG 3 cut(s) 1065, 1254, 1498
Bme18I GGWCC 3 cut(s) 1250, 1624, 1658
BmgT120I GGNCC 4 cut(s) 1058, 1250, 1624, 1658
BmiI GGNNCC 2 cut(s) 453, 1304
BmrFI CCNGG 3 cut(s) 1065, 1254, 1498
BmrI ACTGGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 838, 1676
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 3 cut(s) 392, 478, 1110
BpuMI CCSGG 1 cut(s) 1254
BsaHI GRCGYC 2 cut(s) 1023, 1160
BsaJI CCNNGG 5 cut(s) 43, 945, 1064, 1253, 1306
BsaWI WCCGGW 2 cut(s) 371, 1186
BsaXI ACNNNNNCTCC 4 cut(s) 1249, 1279, 1294, 1324
Bsc4I CCNNNNNNNGG 6 cut(s) 587, 793, 856, 1091, 1279, 1464
Bse118I RCCGGY 1 cut(s) 1084
Bse1I ACTGG 5 cut(s) 187, 208, 850, 1530, 1627
Bse21I CCTNAGG 1 cut(s) 1434
Bse3DI GCAATG 1 cut(s) 919
BseAI TCCGGA 1 cut(s) 1186
BseBI CCWGG 2 cut(s) 1065, 1498
BseDI CCNNGG 5 cut(s) 43, 945, 1064, 1253, 1306
BseGI GGATG 3 cut(s) 222, 468, 1119
BseLI CCNNNNNNNGG 6 cut(s) 587, 793, 856, 1091, 1279, 1464
BseMI GCAATG 1 cut(s) 919
BseMII CTCAG 3 cut(s) 81, 96, 1065
BseNI ACTGG 5 cut(s) 187, 208, 850, 1530, 1627
BseRI GAGGAG 2 cut(s) 149, 1133
BseSI GKGCMC 1 cut(s) 1020
BseX3I CGGCCG 1 cut(s) 1082
BseXI GCAGC 5 cut(s) 748, 1095, 1117, 1597, 1662
BsgI GTGCAG 1 cut(s) 681
Bsh1236I CGCG 2 cut(s) 1028, 1538
Bsh1285I CGRYCG 2 cut(s) 725, 1085
BshFI GGCC 3 cut(s) 591, 1060, 1084
BsiEI CGRYCG 2 cut(s) 725, 1085
BsiHKAI GWGCWC 3 cut(s) 438, 925, 1020
BsiSI CCGG 5 cut(s) 372, 446, 1085, 1187, 1253
BslFI GGGAC 2 cut(s) 339, 1376
BslI CCNNNNNNNGG 6 cut(s) 587, 793, 856, 1091, 1279, 1464
BsmAI GTCTC 5 cut(s) 315, 371, 743, 860, 1512
BsmBI CGTCTC 2 cut(s) 371, 860
BsmFI GGGAC 2 cut(s) 339, 1376
BsnI GGCC 3 cut(s) 591, 1060, 1084
Bsp1286I GDGCHC 4 cut(s) 438, 925, 1020, 1273
Bsp13I TCCGGA 1 cut(s) 1186
Bsp143I GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
Bsp19I CCATGG 1 cut(s) 1306
BspANI GGCC 3 cut(s) 591, 1060, 1084
BspCNI CTCAG 3 cut(s) 80, 97, 1066
BspEI TCCGGA 1 cut(s) 1186
BspFNI CGCG 2 cut(s) 1028, 1538
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 453, 1304
BspMAI CTGCAG 1 cut(s) 1173
BspPI GGATC 6 cut(s) 446, 459, 882, 1108, 1348, 1536
BsrDI GCAATG 1 cut(s) 919
BsrFI RCCGGY 1 cut(s) 1084
BsrI ACTGG 5 cut(s) 187, 208, 850, 1530, 1627
BssAI RCCGGY 1 cut(s) 1084
BssECI CCNNGG 5 cut(s) 43, 945, 1064, 1253, 1306
BssMI GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
BssNI GRCGYC 2 cut(s) 1023, 1160
BssSI CACGAG 1 cut(s) 1359
BssT1I CCWWGG 3 cut(s) 43, 945, 1306
Bst2BI CACGAG 1 cut(s) 1359
Bst2UI CCWGG 2 cut(s) 1065, 1498
Bst4CI ACNGT 4 cut(s) 382, 689, 1278, 1675
BstACI GRCGYC 2 cut(s) 1023, 1160
BstC8I GCNNGC 2 cut(s) 921, 1086
BstDEI CTNAG 5 cut(s) 67, 105, 1074, 1434, 1725
BstDSI CCRYGG 1 cut(s) 1306
BstF5I GGATG 3 cut(s) 222, 468, 1119
BstFNI CGCG 2 cut(s) 1028, 1538
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 3 cut(s) 530, 900, 1030
BstKTI GATC 6 cut(s) 454, 725, 877, 1103, 1356, 1531
BstMAI GTCTC 5 cut(s) 315, 371, 743, 860, 1512
BstMBI GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
BstMCI CGRYCG 2 cut(s) 725, 1085
BstMWI GCNNNNNNNGC 5 cut(s) 442, 1066, 1336, 1468, 1685
BstNI CCWGG 2 cut(s) 1065, 1498
BstNSI RCATGY 5 cut(s) 25, 505, 643, 660, 1482
BstSCI CCNGG 3 cut(s) 1063, 1252, 1496
BstSFI CTRYAG 3 cut(s) 75, 1146, 1169
BstSLI GKGCMC 1 cut(s) 1020
BstUI CGCG 2 cut(s) 1028, 1538
BstV1I GCAGC 5 cut(s) 748, 1095, 1117, 1597, 1662
BstV2I GAAGAC 2 cut(s) 838, 1676
BstX2I RGATCY 2 cut(s) 451, 1528
BstXI CCANNNNNNTGG 1 cut(s) 1504
BstYI RGATCY 2 cut(s) 451, 1528
BstZI CGGCCG 1 cut(s) 1082
Bsu36I CCTNAGG 1 cut(s) 1434
BsuRI GGCC 3 cut(s) 591, 1060, 1084
BtgI CCRYGG 1 cut(s) 1306
BtsCI GGATG 3 cut(s) 222, 468, 1119
BtsI GCAGTG 3 cut(s) 675, 1356, 1695
BtsIMutI CAGTG 3 cut(s) 675, 1356, 1695
Cac8I GCNNGC 2 cut(s) 921, 1086
CciI TCATGA 1 cut(s) 57
CfoI GCGC 3 cut(s) 530, 900, 1030
Cfr10I RCCGGY 1 cut(s) 1084
Cfr13I GGNCC 4 cut(s) 1058, 1250, 1624, 1658
CseI GACGC 3 cut(s) 1149, 1544, 1616
Csp6I GTAC 5 cut(s) 288, 964, 998, 1476, 1640
CviQI GTAC 5 cut(s) 288, 964, 998, 1476, 1640
DdeI CTNAG 5 cut(s) 67, 105, 1074, 1434, 1725
DpnI GATC 6 cut(s) 453, 724, 876, 1102, 1355, 1530
DpnII GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
EaeI YGGCCR 2 cut(s) 589, 1082
EagI CGGCCG 1 cut(s) 1082
EciI GGCGGA 2 cut(s) 989, 1055
EclXI CGGCCG 1 cut(s) 1082
Eco130I CCWWGG 3 cut(s) 43, 945, 1306
Eco24I GRGCYC 1 cut(s) 1273
Eco47I GGWCC 3 cut(s) 1250, 1624, 1658
Eco52I CGGCCG 1 cut(s) 1082
Eco81I CCTNAGG 1 cut(s) 1434
EcoRII CCWGG 2 cut(s) 1063, 1496
EcoT14I CCWWGG 3 cut(s) 43, 945, 1306
EcoT38I GRGCYC 1 cut(s) 1273
ErhI CCWWGG 3 cut(s) 43, 945, 1306
Esp3I CGTCTC 2 cut(s) 371, 860
FalI AAGNNNNNCTT 4 cut(s) 795, 827, 1328, 1360
FaqI GGGAC 2 cut(s) 339, 1376
FauI CCCGC 1 cut(s) 1192
FblI GTMKAC 1 cut(s) 1149
Fnu4HI GCNGC 9 cut(s) 762, 778, 1106, 1109, 1331, 1469, 1593, 1611, 1651
FokI GGATG 3 cut(s) 229, 455, 1126
FriOI GRGCYC 1 cut(s) 1273
Fsp4HI GCNGC 9 cut(s) 762, 778, 1106, 1109, 1331, 1469, 1593, 1611, 1651
FspBI CTAG 5 cut(s) 44, 1164, 1286, 1341, 1532
FspI TGCGCA 1 cut(s) 899
GlaI GCGC 3 cut(s) 529, 899, 1029
GluI GCNGC 9 cut(s) 762, 778, 1106, 1109, 1331, 1469, 1593, 1611, 1651
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 3 cut(s) 591, 1060, 1084
HapII CCGG 5 cut(s) 372, 446, 1085, 1187, 1253
HgaI GACGC 3 cut(s) 1149, 1544, 1616
HhaI GCGC 3 cut(s) 530, 900, 1030
Hin1I GRCGYC 2 cut(s) 1023, 1160
Hin6I GCGC 3 cut(s) 528, 898, 1028
HinP1I GCGC 3 cut(s) 528, 898, 1028
HinfI GANTC 6 cut(s) 61, 101, 491, 818, 1005, 1411
HpaII CCGG 5 cut(s) 372, 446, 1085, 1187, 1253
HphI GGTGA 3 cut(s) 386, 898, 1322
Hpy166II GTNNAC 4 cut(s) 1018, 1150, 1250, 1624
Hpy188I TCNGA 5 cut(s) 106, 817, 1075, 1582, 1618
Hpy8I GTNNAC 4 cut(s) 1018, 1150, 1250, 1624
Hpy99I CGWCG 3 cut(s) 1025, 1028, 1610
HpyAV CCTTC 7 cut(s) 262, 665, 797, 865, 1458, 1559, 1639
HpyCH4III ACNGT 4 cut(s) 382, 689, 1278, 1675
HpyCH4IV ACGT 4 cut(s) 367, 929, 1023, 1572
HpyCH4V TGCA 8 cut(s) 630, 643, 656, 662, 982, 1018, 1171, 1688
HpyF10VI GCNNNNNNNGC 5 cut(s) 442, 1066, 1336, 1468, 1685
HpyF3I CTNAG 5 cut(s) 67, 105, 1074, 1434, 1725
HpySE526I ACGT 4 cut(s) 367, 929, 1023, 1572
Hsp92I GRCGYC 2 cut(s) 1023, 1160
HspAI GCGC 3 cut(s) 528, 898, 1028
Kpn2I TCCGGA 1 cut(s) 1186
KroI GCCGGC 1 cut(s) 1084
KroNI GCCGGC 1 cut(s) 1086
Kzo9I GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
LmnI GCTCC 3 cut(s) 1257, 1302, 1317
Lsp1109I GCAGC 5 cut(s) 748, 1095, 1117, 1597, 1662
LweI GCATC 1 cut(s) 477
MaeI CTAG 5 cut(s) 44, 1164, 1286, 1341, 1532
MaeII ACGT 4 cut(s) 367, 929, 1023, 1572
MaeIII GTNAC 4 cut(s) 47, 569, 1439, 1541
MalI GATC 6 cut(s) 453, 724, 876, 1102, 1355, 1530
MboI GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
MboII GAAGA 7 cut(s) 98, 837, 838, 1420, 1432, 1678, 1681
MflI RGATCY 2 cut(s) 451, 1528
MhlI GDGCHC 4 cut(s) 438, 925, 1020, 1273
MlyI GAGTC 1 cut(s) 485
MroI TCCGGA 1 cut(s) 1186
MroNI GCCGGC 1 cut(s) 1084
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 2 cut(s) 236, 513
MslI CAYNNNNRTG 2 cut(s) 655, 905
MspA1I CMGCKG 2 cut(s) 293, 1108
MspI CCGG 5 cut(s) 372, 446, 1085, 1187, 1253
MspR9I CCNGG 3 cut(s) 1065, 1254, 1498
MvaI CCWGG 2 cut(s) 1065, 1498
MvnI CGCG 2 cut(s) 1028, 1538
MwoI GCNNNNNNNGC 5 cut(s) 442, 1066, 1336, 1468, 1685
NaeI GCCGGC 1 cut(s) 1086
NciI CCSGG 1 cut(s) 1254
NcoI CCATGG 1 cut(s) 1306
NdeII GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
NgoMIV GCCGGC 1 cut(s) 1084
NlaIV GGNNCC 2 cut(s) 453, 1304
NmeAIII GCCGAG 1 cut(s) 753
NmuCI GTSAC 3 cut(s) 47, 569, 1439
NsbI TGCGCA 1 cut(s) 899
NspI RCATGY 5 cut(s) 25, 505, 643, 660, 1482
PagI TCATGA 1 cut(s) 57
PciI ACATGT 2 cut(s) 21, 1478
PcsI WCGNNNNNNNCGW 2 cut(s) 718, 1542
PdiI GCCGGC 1 cut(s) 1086
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 5 cut(s) 61, 101, 818, 1005, 1411
PflFI GACNNNGTC 1 cut(s) 330
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 9 cut(s) 763, 779, 1107, 1110, 1332, 1470, 1594, 1612, 1652
Ple19I CGATCG 1 cut(s) 725
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PscI ACATGT 2 cut(s) 21, 1478
PshBI ATTAAT 1 cut(s) 236
PsiI TTATAA 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 1063, 1496
PspGI CCWGG 2 cut(s) 1063, 1496
PspN4I GGNNCC 2 cut(s) 453, 1304
PspPI GGNCC 4 cut(s) 1058, 1250, 1624, 1658
PstI CTGCAG 1 cut(s) 1173
PsuI RGATCY 2 cut(s) 451, 1528
PsyI GACNNNGTC 1 cut(s) 330
PvuI CGATCG 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 1108
RsaI GTAC 5 cut(s) 289, 965, 999, 1477, 1641
RsaNI GTAC 5 cut(s) 288, 964, 998, 1476, 1640
RseI CAYNNNNRTG 2 cut(s) 655, 905
SaqAI TTAA 2 cut(s) 236, 513
SatI GCNGC 9 cut(s) 762, 778, 1106, 1109, 1331, 1469, 1593, 1611, 1651
Sau3AI GATC 6 cut(s) 451, 722, 874, 1100, 1353, 1528
Sau96I GGNCC 4 cut(s) 1058, 1250, 1624, 1658
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 3 cut(s) 1065, 1254, 1498
SduI GDGCHC 4 cut(s) 438, 925, 1020, 1273
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 3 cut(s) 75, 1146, 1169
SinI GGWCC 3 cut(s) 1250, 1624, 1658
SmiMI CAYNNNNRTG 2 cut(s) 655, 905
SmlI CTYRAG 3 cut(s) 407, 493, 1125
SmoI CTYRAG 3 cut(s) 407, 493, 1125
SspI AATATT 2 cut(s) 392, 616
SspMI CTAG 5 cut(s) 44, 1164, 1286, 1341, 1532
StyD4I CCNGG 3 cut(s) 1063, 1252, 1496
StyI CCWWGG 3 cut(s) 43, 945, 1306
TaaI ACNGT 4 cut(s) 382, 689, 1278, 1675
TaiI ACGT 4 cut(s) 370, 932, 1026, 1575
TaqI TCGA 4 cut(s) 557, 721, 725, 1267
TauI GCSGC 4 cut(s) 780, 1333, 1471, 1595
TfiI GAWTC 5 cut(s) 61, 101, 818, 1005, 1411
Tru1I TTAA 2 cut(s) 236, 513
Tru9I TTAA 2 cut(s) 236, 513
TscAI CASTG 3 cut(s) 682, 1356, 1695
TseFI GTSAC 3 cut(s) 47, 569, 1439
TseI GCWGC 5 cut(s) 761, 1105, 1108, 1610, 1650
Tsp45I GTSAC 3 cut(s) 47, 569, 1439
TspDTI ATGAA 5 cut(s) 171, 204, 492, 533, 1358
TspRI CASTG 3 cut(s) 682, 1356, 1695
Tth111I GACNNNGTC 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 587
VneI GTGCAC 1 cut(s) 1016
VpaK11BI GGWCC 3 cut(s) 1250, 1624, 1658
VspI ATTAAT 1 cut(s) 236
XapI RAATTY 4 cut(s) 458, 480, 727, 1364
XbaI TCTAGA 2 cut(s) 1163, 1531
XceI RCATGY 5 cut(s) 25, 505, 643, 660, 1482
XcmI CCANNNNNNNNNTGG 1 cut(s) 1687
XmaJI CCTAGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 1149
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 5 cut(s) 44, 1164, 1286, 1341, 1532
ZraI GACGTC 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.