FvH4_3g26161
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000469
Physical Location & Seq
Forward (+)
19044228 .. 19047978
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26161.t1

Sequence Viewer

Length: 351 bp
ATGACGCGGTGGACGGTTTACCAGGGTGGTATACCTGTCGTAGCCCTATATGACGATACAGGGAGTCATAGGGCACACGTCTTTCCGCCATTGGCGCAGTGGACGGTTCAAAGTGAACTTGTTGTAGCCCGAAAGGGAGTCTTTTCTGTCATTGGCGCAATAGACGGTTCAGTGAAGGAAGCTCGTCGCGACAGATTGTTTGAAGTTTTTGATGTGGAAGATATGATATTTGATGAGGAAGACAATGTACCGGCGAACTTAGATATGTCACAAGAGAACCTTGCACAGATGACTAATGTTAGAAATGAAATTGCCGAAAGCTTGTGGCATGATTTTATTCCCCACCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

117

Amino Acids

13.18

Weight (kDa)

4.58

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AccII CGCG 2 cut(s) 7, 189
AciI CCGC 2 cut(s) 7, 86
AfaI GTAC 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 2 cut(s) 110, 203
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 182, 321
AluI AGCT 2 cut(s) 182, 321
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 2 cut(s) 97, 158
BaeGI GKGCMC 1 cut(s) 76
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbsI GAAGAC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 250
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 76
Bsh1236I CGCG 2 cut(s) 7, 189
BsiSI CCGG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 76
Bsp68I TCGCGA 1 cut(s) 189
BspACI CCGC 2 cut(s) 7, 86
BspFNI CGCG 2 cut(s) 7, 189
BsrFI RCCGGY 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 22
BssNAI GTATAC 1 cut(s) 32
Bst1107I GTATAC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 16, 106, 167
BstDEI CTNAG 2 cut(s) 259, 348
BstFNI CGCG 2 cut(s) 7, 189
BstHHI GCGC 2 cut(s) 97, 158
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 7, 189
BstV2I GAAGAC 1 cut(s) 246
BstZ17I GTATAC 1 cut(s) 32
BtrI CACGTC 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 104, 177
BtuMI TCGCGA 1 cut(s) 189
CfoI GCGC 2 cut(s) 97, 158
Cfr10I RCCGGY 1 cut(s) 250
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 329
CviJI RGCY 4 cut(s) 44, 128, 182, 321
CviKI_1 RGCY 4 cut(s) 44, 128, 182, 321
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 2 cut(s) 259, 348
EciI GGCGGA 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 332
FaiI YATR 7 cut(s) 32, 49, 51, 69, 224, 266, 330
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 264, 296
FatI CATG 1 cut(s) 328
FblI GTMKAC 1 cut(s) 31
GlaI GCGC 2 cut(s) 96, 157
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 97, 158
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 2 cut(s) 95, 156
HinP1I GCGC 2 cut(s) 95, 156
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 2 cut(s) 64, 138
HpaII CCGG 1 cut(s) 251
Hpy166II GTNNAC 5 cut(s) 12, 19, 32, 102, 116
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 5 cut(s) 12, 19, 32, 102, 116
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 3 cut(s) 16, 106, 167
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 2 cut(s) 259, 348
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 2 cut(s) 95, 156
LpnPI CCDG 5 cut(s) 8, 35, 45, 48, 264
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 267
MboII GAAGA 2 cut(s) 230, 251
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 309
MlyI GAGTC 2 cut(s) 73, 147
MnlI CCTC 1 cut(s) 229
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 2 cut(s) 7, 189
MwoI GCNNNNNNNGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 267
NruI TCGCGA 1 cut(s) 189
PleI GAGTC 2 cut(s) 72, 146
PpsI GAGTC 2 cut(s) 72, 146
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
RruI TCGCGA 1 cut(s) 189
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SchI GAGTC 2 cut(s) 73, 147
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 76
SetI ASST 5 cut(s) 37, 81, 184, 282, 323
Sse9I AATT 1 cut(s) 309
SsiI CCGC 2 cut(s) 7, 86
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 16, 106, 167
TaiI ACGT 1 cut(s) 81
TasI AATT 1 cut(s) 309
TscAI CASTG 2 cut(s) 104, 177
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 2 cut(s) 104, 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.