Rmu_sc0008636.1_g000002
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008636.1
OG0000469
Physical Location & Seq
Reverse (-)
13577 .. 14005
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008636.1_g000002.1.cds

Sequence Viewer

Length: 429 bp
atgaaagggtacctgggaccatataaaaataacacatatcatcttccagattttcgtaggggtggtggcccgacaggccctaaggaggtattcaactacgtgcactcttctctcagaagcgtcattgaacgcacttttggagtctggaagaaaaagtggaagattttaagggacatgcctaactatccgtttgacaagcaagtgaagataatcattgcaaccatggcacttcataactacataaggagacatgctgaaaacgataaacattttgataaacatgggagcgagaatagcactgaagcttataagaccactgatatagaggatgatacacaaggagatcatcgtagtcgtcatgatgtcggtgcacaagaaatggaagtattaagaaataatatagccacaagtttaatgaatgcaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

142

Amino Acids

16.52

Weight (kDa)

9.27

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 94, 128
AjnI CCWGG 1 cut(s) 12
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw21I GWGCWC 2 cut(s) 105, 373
Alw26I GTCTC 1 cut(s) 241
Alw44I GTGCAC 2 cut(s) 101, 369
AoxI GGCC 2 cut(s) 67, 76
ApaLI GTGCAC 2 cut(s) 101, 369
Asp718I GGTACC 1 cut(s) 9
AspS9I GGNCC 3 cut(s) 17, 68, 77
AvaII GGWCC 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 81
BaeGI GKGCMC 2 cut(s) 105, 373
BanI GGYRCC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 105, 373
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 3 cut(s) 17, 68, 77
BmiI GGNNCC 2 cut(s) 11, 18
BmrFI CCNGG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 13, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 213, 429
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 13, 222
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 2 cut(s) 213, 429
BseMII CTCAG 1 cut(s) 127
BseSI GKGCMC 2 cut(s) 105, 373
BshFI GGCC 2 cut(s) 69, 78
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 105, 373
BslFI GGGAC 2 cut(s) 30, 185
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 2 cut(s) 30, 185
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 2 cut(s) 69, 78
Bsp1286I GDGCHC 2 cut(s) 105, 373
Bsp143I GATC 1 cut(s) 343
Bsp19I CCATGG 1 cut(s) 222
BspANI GGCC 2 cut(s) 69, 78
BspCNI CTCAG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 11, 18
BspT107I GGYRCC 1 cut(s) 9
BsrDI GCAATG 2 cut(s) 213, 429
BssECI CCNNGG 2 cut(s) 13, 222
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 81, 113
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 3 cut(s) 75, 224, 294
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 2 cut(s) 178, 254
BstSCI CCNGG 1 cut(s) 12
BstSLI GKGCMC 2 cut(s) 105, 373
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 69, 78
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 297, 315
CciI TCATGA 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 17, 68, 77
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 10
CviAII CATG 5 cut(s) 175, 223, 251, 281, 359
CviJI RGCY 4 cut(s) 69, 78, 305, 404
CviKI_1 RGCY 4 cut(s) 69, 78, 305, 404
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 81, 113
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 321
Eco81I CCTNAGG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 5 cut(s) 178, 226, 254, 284, 362
FaqI GGGAC 2 cut(s) 30, 185
FatI CATG 5 cut(s) 174, 222, 250, 280, 358
FokI GGATG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 69, 78
HgaI GACGC 1 cut(s) 109
Hin1II CATG 5 cut(s) 178, 226, 254, 284, 362
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 103, 371
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 3 cut(s) 47, 145, 359
Hpy8I GTNNAC 2 cut(s) 103, 371
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 4 cut(s) 103, 218, 371, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 224, 294
HpyF3I CTNAG 2 cut(s) 81, 113
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 5 cut(s) 178, 226, 254, 284, 362
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 4 cut(s) 26, 60, 60, 130
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 5 cut(s) 35, 99, 160, 172, 217
MhlI GDGCHC 2 cut(s) 105, 373
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 2 cut(s) 79, 319
MseI TTAA 3 cut(s) 167, 389, 413
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 75, 224, 294
NcoI CCATGG 1 cut(s) 222
NdeII GATC 1 cut(s) 343
NlaIII CATG 5 cut(s) 178, 226, 254, 284, 362
NlaIV GGNNCC 2 cut(s) 11, 18
NspI RCATGY 2 cut(s) 178, 254
PagI TCATGA 1 cut(s) 358
PctI GAATGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 100
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 11, 18
PspPI GGNCC 3 cut(s) 17, 68, 77
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 167, 389, 413
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 3 cut(s) 17, 68, 77
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 2 cut(s) 105, 373
SetI ASST 4 cut(s) 15, 90, 102, 307
SfiI GGCCNNNNNGGCC 1 cut(s) 75
SinI GGWCC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 102
Tru1I TTAA 3 cut(s) 167, 389, 413
Tru9I TTAA 3 cut(s) 167, 389, 413
TscAI CASTG 2 cut(s) 304, 322
TspDTI ATGAA 2 cut(s) 17, 221
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 304, 322
VneI GTGCAC 2 cut(s) 101, 369
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 2 cut(s) 178, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.