FvH4_1g19401
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000469
Physical Location & Seq
Forward (+)
11635886 .. 11637822
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19401.t1

Sequence Viewer

Length: 483 bp
ATGATTCCCTCAGCTAGTATAGTTGGTGAAGAGGTATTGGAGGATTTTGAGCATGATGAGGATGAGGTTCCTGATCCCGTGGAAGATATTCAAGGTAGGGGGAAAAAAGAGAACAACCGTGGAAAGGATTGTGTTGACGCAATTGATGGTGTTCATGTTCAAGCTATTATTTCTCCATATGATCAAGTGCCGTATATCGGTACTGCCCATGATAGTAGAGTATTCTTATCGGCCATGCGCAACCCTTTGGCAAATTTGCCCAAACCCCCAAATGGAAAGTACTATGTGGTAGATGCCGGATATCCACAAATGAGAGGTTATTTAGGACCGTATAAAGGTGAGAGGTATCACCTTCCACATTTTCGTAGAGGTGATGAACCGACGGGTCATAAAGAAATATTTAATCATGCACATTCTTCACTTAGGGGTATTATTGAGCGCACTTTTGGGGTATGGAAAAAAAAAGTGGAGTGTTTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

5.88

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 63 - 159 7.2e-10 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 239
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 2 cut(s) 202, 281
AfiI CCNNNNNNNGG 4 cut(s) 124, 197, 272, 335
AgsI TTSAA 2 cut(s) 92, 161
AluBI AGCT 2 cut(s) 14, 164
AluI AGCT 2 cut(s) 14, 164
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 253
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 2 cut(s) 240, 441
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 4 cut(s) 38, 341, 350, 383
AvaII GGWCC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 175
BclI TGATCA 1 cut(s) 181
BfaI CTAG 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 283
Bpu10I CCTNAGC 1 cut(s) 10
BsaAI YACGTR 1 cut(s) 480
BsaJI CCNNGG 2 cut(s) 78, 118
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 197, 272, 335
BseDI CCNNGG 2 cut(s) 78, 118
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 4 cut(s) 124, 197, 272, 335
BseMII CTCAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 4 cut(s) 124, 197, 272, 335
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 73, 181
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 78, 118
BssMI GATC 2 cut(s) 73, 181
Bst4CI ACNGT 2 cut(s) 119, 330
Bst6I CTCTTC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 10, 422
BstDSI CCRYGG 2 cut(s) 78, 118
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 2 cut(s) 240, 441
BstKTI GATC 2 cut(s) 76, 184
BstMBI GATC 2 cut(s) 73, 181
BsuRI GGCC 1 cut(s) 233
BtgI CCRYGG 2 cut(s) 78, 118
BtsCI GGATG 1 cut(s) 67
CfoI GCGC 2 cut(s) 240, 441
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 201, 280
CviAII CATG 5 cut(s) 53, 155, 209, 235, 407
CviJI RGCY 3 cut(s) 14, 164, 233
CviKI_1 RGCY 3 cut(s) 14, 164, 233
CviQI GTAC 2 cut(s) 201, 280
DdeI CTNAG 2 cut(s) 10, 422
DpnI GATC 2 cut(s) 75, 183
DpnII GATC 2 cut(s) 73, 181
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco32I GATATC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 326
EcoRV GATATC 1 cut(s) 302
FaeI CATG 5 cut(s) 56, 158, 212, 238, 410
FatI CATG 5 cut(s) 52, 154, 208, 234, 406
FauNDI CATATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 181
FokI GGATG 1 cut(s) 74
FspBI CTAG 1 cut(s) 15
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 2 cut(s) 239, 440
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 240, 441
Hin1II CATG 5 cut(s) 56, 158, 212, 238, 410
Hin6I GCGC 2 cut(s) 238, 439
HinP1I GCGC 2 cut(s) 238, 439
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 297
HphI GGTGA 4 cut(s) 38, 341, 350, 383
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 2 cut(s) 119, 330
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 10, 422
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 5 cut(s) 56, 158, 212, 238, 410
HspAI GCGC 2 cut(s) 238, 439
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 73, 181
LpnPI CCDG 2 cut(s) 84, 310
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 479
MalI GATC 2 cut(s) 75, 183
MboI GATC 2 cut(s) 73, 181
MboII GAAGA 3 cut(s) 41, 95, 408
MfeI CAATTG 1 cut(s) 141
MluCI AATT 2 cut(s) 141, 253
MnlI CCTC 8 cut(s) 19, 25, 34, 52, 58, 308, 336, 362
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 141
NdeI CATATG 1 cut(s) 178
NdeII GATC 2 cut(s) 73, 181
NlaIII CATG 5 cut(s) 56, 158, 212, 238, 410
NlaIV GGNNCC 1 cut(s) 69
NsbI TGCGCA 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 4
Ppu21I YACGTR 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 326
RsaI GTAC 2 cut(s) 202, 281
RsaNI GTAC 2 cut(s) 201, 280
SaqAI TTAA 1 cut(s) 402
Sau3AI GATC 2 cut(s) 73, 181
Sau96I GGNCC 1 cut(s) 326
ScaI AGTACT 1 cut(s) 281
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 326
Sse9I AATT 2 cut(s) 141, 253
SspI AATATT 1 cut(s) 399
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 119, 330
TaiI ACGT 1 cut(s) 482
TasI AATT 2 cut(s) 141, 253
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TspDTI ATGAA 2 cut(s) 143, 390
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 1 cut(s) 15
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.