MD16G1281600.v1.1
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000469
Physical Location & Seq
Forward (+)
38399663 .. 38400125
463 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1281600.v1.1.491

Sequence Viewer

Length: 342 bp
ATGAGTGGGTTTCTTGCACCATATCGCAAAGTGCGTTATCACTTGTGTGATTTTAGAGGAAGAGGTAAACGTCCAAGAGGAGCAATGGAATTGTTCAACTTTAGGAAGCAAAGACGCATTCTCGTTGCATGTTGTGCCGTGCACAATTTCATTAGAATGCAATCAAGGAATGATGCTTTGTTTCAACAATTTAAAGGCAATGACGTTGATGTGGTAGATGAAGAAAGCTCGGGGGCGAATCAAGAAGGGGAAAACATGCATTTGAATGACAACAATGTTATGAATGATGTTAGAGACCACATAGCCGGATCAATGTGGCTTGATTACGTCAATAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

114

Amino Acids

13.17

Weight (kDa)

8.55

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 316
AgsI TTSAA 3 cut(s) 97, 185, 265
AleI CACNNNNGTG 1 cut(s) 45
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 288
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 229
BmsI GCATC 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 288
Bse3DI GCAATG 2 cut(s) 90, 205
BseMI GCAATG 2 cut(s) 90, 205
BseRI GAGGAG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 288
BsmI GAATGC 2 cut(s) 117, 162
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 308
BspPI GGATC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 90, 205
BssMI GATC 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 2 cut(s) 132, 259
BstSLI GKGCMC 1 cut(s) 144
CseI GACGC 1 cut(s) 123
CviAII CATG 2 cut(s) 129, 256
CviJI RGCY 3 cut(s) 228, 305, 319
CviKI_1 RGCY 3 cut(s) 228, 305, 319
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
DraI TTTAAA 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 261
FaeI CATG 2 cut(s) 132, 259
FaiI YATR 5 cut(s) 22, 130, 257, 281, 302
FatI CATG 2 cut(s) 128, 255
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 123
Hin1II CATG 2 cut(s) 132, 259
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 306
Hpy166II GTNNAC 2 cut(s) 68, 142
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 2 cut(s) 68, 142
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 3 cut(s) 70, 204, 327
HpyCH4V TGCA 5 cut(s) 17, 128, 142, 160, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 3 cut(s) 70, 204, 327
Hsp92II CATG 2 cut(s) 132, 259
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 1 cut(s) 319
LweI GCATC 1 cut(s) 163
MaeII ACGT 3 cut(s) 70, 204, 327
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 2 cut(s) 72, 233
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 4 cut(s) 89, 145, 188, 337
MnlI CCTC 3 cut(s) 50, 56, 71
Mph1103I ATGCAT 1 cut(s) 261
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 3 cut(s) 45, 155, 264
MspI CCGG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 117, 162
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 308
NlaIII CATG 2 cut(s) 132, 259
NsiI ATGCAT 1 cut(s) 261
NspI RCATGY 2 cut(s) 132, 259
OliI CACNNNNGTG 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 2 cut(s) 117, 162
PfeI GAWTC 1 cut(s) 238
RseI CAYNNNNRTG 3 cut(s) 45, 155, 264
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 144
SetI ASST 5 cut(s) 67, 73, 207, 230, 330
SfaNI GCATC 1 cut(s) 163
SmiMI CAYNNNNRTG 3 cut(s) 45, 155, 264
Sse9I AATT 4 cut(s) 89, 145, 188, 337
TaiI ACGT 3 cut(s) 73, 207, 330
TasI AATT 4 cut(s) 89, 145, 188, 337
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 3 cut(s) 139, 234, 296
VneI GTGCAC 1 cut(s) 140
XceI RCATGY 2 cut(s) 132, 259
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.