RchiOBHm_Chr7g0199291
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000469
Physical Location & Seq
Forward (+)
17334934 .. 17336340
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17833

Sequence Viewer

Length: 1029 bp
ATGGAAGTGTTAGAAGGCAATGAAAGTAGGTGTTCTAATCAATTTAGGATGGATAAGCAAGTCTTCCTCATGCTTGTAAATTATTTGGAAAAGATATTGAAGGGTTCAAGAAACATGAGTATTGTTGAAATGTTGGCTATGTTTCTCTATATTTTGGGACAAGGTCAGACAAATAGGAATACACAAGAACGTTTTCAACGTTCTGGTGAGACGGTTAGTAGGTATTTTGATATAATGTTAGAGATTTTCTATAATATGGCAAAAGTGCTCATAAAGCCATTGGATCCGGAATTTAGGAGCATCCCACAAGAAATTCTAACTGATTCAAGATACATGCCTCATTTTAAGGATTGCATTGGCGCTATTGATGGTGTTCATGTCCAAGCTTCGATATCTCCATGTGATCAAGTGCCATACATTGGAAGAAAAGGGATACCCACCCAAAATGTATTGGCTATTTGCAACTTCAACATGCAATTCACATTTGTATGTGTAGGGTGGGAAGGCACCGCCCATGATAGTAGAGTATTCTTATCAGCTCTACGCAATCCTCGATCGAATTTTCCTAAACCCCCAAATGGAAAATACTATGTGGTGGATGCAGGATATCCACAAATGAAGGGTTATTTAGGACCATATAAAGGTGAGCGGTACCACCTTCCACATTTTCGTAGAGGTGATGAACCGACCGGTCATAAAGAAATATTCAATCATGCACATTCTTCACTAAGGGGCGTTATTGAGCGCACTTTTGGGATATGGAAAAAGAAATGGAGTATTTTACGTGATATGCCACATTTTCCTTATGAAAAACAAGTGAAGATAGTTATTGCTACTATGGCTCTTCATAATTACATAAGAAGACATGGTCAACAAGATATTGATTTTGATGAAAGTGGAAATTACTCAAGTGAAGAGACTAGTGAAGAGATGGAGGATAATAAACATGATGGAGATGGTTTAGGAAGACAAGAAATGGAGGTGTTAAGAAATGCAATTGCACAAAGTCTAATGAATTCATCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

342

Amino Acids

39.55

Weight (kDa)

7.2

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 2 - 83 2.9e-29 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 116 - 281 8e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 122 - 284 3e-22 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 2 cut(s) 506, 651
AccB7I CCANNNNNTGG 1 cut(s) 419
AccBSI CCGCTC 1 cut(s) 649
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 2 cut(s) 510, 649
AclI AACGTT 2 cut(s) 190, 199
AclWI GGATC 2 cut(s) 278, 291
AcsI RAATTY 4 cut(s) 290, 312, 559, 1015
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 3 cut(s) 419, 578, 641
AgeI ACCGGT 1 cut(s) 689
AgsI TTSAA 7 cut(s) 100, 108, 128, 197, 327, 469, 709
AhlI ACTAGT 1 cut(s) 920
AluBI AGCT 2 cut(s) 386, 539
AluI AGCT 2 cut(s) 386, 539
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 203, 911
AlwI GGATC 2 cut(s) 278, 291
Aor13HI TCCGGA 1 cut(s) 286
ApoI RAATTY 4 cut(s) 290, 312, 559, 1015
AsiGI ACCGGT 1 cut(s) 689
Asp700I GAANNNNTTC 1 cut(s) 192
Asp718I GGTACC 1 cut(s) 651
AspLEI GCGC 2 cut(s) 362, 747
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 3 cut(s) 218, 656, 689
AvaII GGWCC 1 cut(s) 632
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 2 cut(s) 506, 651
BbsI GAAGAC 3 cut(s) 55, 868, 973
Bbv12I GWGCWC 1 cut(s) 270
BccI CCATC 5 cut(s) 43, 362, 925, 944, 950
BciVI GTATCC 1 cut(s) 426
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 203, 911
BcuI ACTAGT 1 cut(s) 920
BfaI CTAG 1 cut(s) 921
BfoI RGCGCY 1 cut(s) 363
BfuI GTATCC 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 3 cut(s) 285, 508, 653
BmsI GCATC 2 cut(s) 309, 589
BpiI GAAGAC 3 cut(s) 55, 868, 973
BpuEI CTTGAG 1 cut(s) 892
BsaAI YACGTR 1 cut(s) 785
BsaWI WCCGGW 2 cut(s) 286, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 578, 641
Bse118I RCCGGY 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 25
BseAI TCCGGA 1 cut(s) 286
BseGI GGATG 3 cut(s) 54, 300, 604
BseLI CCNNNNNNNGG 3 cut(s) 419, 578, 641
BseMI GCAATG 1 cut(s) 25
Bsh1285I CGRYCG 2 cut(s) 557, 690
BshNI GGYRCC 2 cut(s) 506, 651
BshTI ACCGGT 1 cut(s) 689
BsiEI CGRYCG 2 cut(s) 557, 690
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 2 cut(s) 287, 690
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 3 cut(s) 419, 578, 641
BsmAI GTCTC 2 cut(s) 203, 911
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 3 cut(s) 283, 403, 554
BspACI CCGC 2 cut(s) 510, 649
BspEI TCCGGA 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 285, 508, 653
BspPI GGATC 2 cut(s) 278, 291
BspQI GCTCTTC 1 cut(s) 849
BspT107I GGYRCC 2 cut(s) 506, 651
BsrBI CCGCTC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 689
BssMI GATC 3 cut(s) 283, 403, 554
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 3 cut(s) 849, 909, 921
BstBAI YACGTR 1 cut(s) 785
BstDEI CTNAG 1 cut(s) 728
BstF5I GGATG 3 cut(s) 54, 300, 604
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 362, 747
BstKTI GATC 3 cut(s) 286, 406, 557
BstMAI GTCTC 2 cut(s) 203, 911
BstMBI GATC 3 cut(s) 283, 403, 554
BstMCI CGRYCG 2 cut(s) 557, 690
BstMWI GCNNNNNNNGC 2 cut(s) 274, 839
BstNSI RCATGY 2 cut(s) 337, 475
BstV2I GAAGAC 3 cut(s) 55, 868, 973
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 1 cut(s) 426
BtsCI GGATG 3 cut(s) 54, 300, 604
CfoI GCGC 2 cut(s) 362, 747
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 632
Csp6I GTAC 1 cut(s) 652
CspAI ACCGGT 1 cut(s) 689
CviJI RGCY 6 cut(s) 137, 277, 386, 455, 539, 842
CviKI_1 RGCY 6 cut(s) 137, 277, 386, 455, 539, 842
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 1 cut(s) 728
DpnI GATC 3 cut(s) 285, 405, 556
DpnII GATC 3 cut(s) 283, 403, 554
Eam1104I CTCTTC 3 cut(s) 849, 909, 921
EarI CTCTTC 3 cut(s) 849, 909, 921
Eco32I GATATC 2 cut(s) 393, 608
Eco47I GGWCC 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 1015
EcoRV GATATC 2 cut(s) 393, 608
Esp3I CGTCTC 1 cut(s) 203
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 1 cut(s) 171
FbaI TGATCA 1 cut(s) 403
FokI GGATG 3 cut(s) 61, 287, 611
FspBI CTAG 1 cut(s) 921
GlaI GCGC 2 cut(s) 361, 746
HaeII RGCGCY 1 cut(s) 363
HapII CCGG 2 cut(s) 287, 690
HhaI GCGC 2 cut(s) 362, 747
Hin6I GCGC 2 cut(s) 360, 745
HinP1I GCGC 2 cut(s) 360, 745
HincII GTYRAC 1 cut(s) 872
HindII GTYRAC 1 cut(s) 872
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 1 cut(s) 323
HpaII CCGG 2 cut(s) 287, 690
HphI GGTGA 3 cut(s) 218, 656, 689
Hpy166II GTNNAC 1 cut(s) 872
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 3 cut(s) 108, 287, 327
Hpy8I GTNNAC 1 cut(s) 872
HpyAV CCTTC 5 cut(s) 8, 94, 497, 613, 668
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 3 cut(s) 190, 199, 784
HpyCH4V TGCA 7 cut(s) 354, 462, 475, 602, 716, 995, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 839
HpyF3I CTNAG 1 cut(s) 728
HpySE526I ACGT 3 cut(s) 190, 199, 784
HspAI GCGC 2 cut(s) 360, 745
Kpn2I TCCGGA 1 cut(s) 286
KpnI GGTACC 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 3 cut(s) 283, 403, 554
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 4 cut(s) 189, 300, 588, 703
LweI GCATC 2 cut(s) 309, 589
MaeI CTAG 1 cut(s) 921
MaeII ACGT 3 cut(s) 190, 199, 784
MalI GATC 3 cut(s) 285, 405, 556
MbiI CCGCTC 1 cut(s) 649
MboI GATC 3 cut(s) 283, 403, 554
MboII GAAGA 9 cut(s) 55, 435, 714, 832, 836, 873, 926, 938, 978
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 270
MnlI CCTC 6 cut(s) 77, 348, 561, 668, 928, 973
MroI TCCGGA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 2 cut(s) 345, 986
MslI CAYNNNNRTG 1 cut(s) 487
MspI CCGG 2 cut(s) 287, 690
MunI CAATTG 1 cut(s) 996
MwoI GCNNNNNNNGC 2 cut(s) 274, 839
NdeII GATC 3 cut(s) 283, 403, 554
NlaIV GGNNCC 3 cut(s) 285, 508, 653
NspI RCATGY 2 cut(s) 337, 475
PciSI GCTCTTC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 2 cut(s) 196, 550
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 323
PflFI GACNNNGTC 2 cut(s) 162, 867
PflMI CCANNNNNTGG 1 cut(s) 419
PinAI ACCGGT 1 cut(s) 689
Ple19I CGATCG 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 785
Psp1406I AACGTT 2 cut(s) 190, 199
PspN4I GGNNCC 3 cut(s) 285, 508, 653
PspPI GGNCC 1 cut(s) 632
PsuI RGATCY 1 cut(s) 283
PsyI GACNNNGTC 2 cut(s) 162, 867
PvuI CGATCG 1 cut(s) 557
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 487
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 2 cut(s) 345, 986
Sau3AI GATC 3 cut(s) 283, 403, 554
Sau96I GGNCC 1 cut(s) 632
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 2 cut(s) 309, 589
SinI GGWCC 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 487
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
SpeI ACTAGT 1 cut(s) 920
SsiI CCGC 2 cut(s) 510, 649
SspI AATATT 1 cut(s) 705
SspMI CTAG 1 cut(s) 921
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 3 cut(s) 193, 202, 787
TaqI TCGA 3 cut(s) 389, 553, 557
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 345, 986
Tru9I TTAA 2 cut(s) 345, 986
TspDTI ATGAA 9 cut(s) 36, 365, 632, 696, 822, 836, 906, 1008, 1028
Tth111I GACNNNGTC 2 cut(s) 162, 867
Van91I CCANNNNNTGG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 4 cut(s) 290, 312, 559, 1015
XceI RCATGY 2 cut(s) 337, 475
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.