FvH4_3g29911
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000469
Physical Location & Seq
Reverse (-)
23020541 .. 23024191
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29911.t1

Sequence Viewer

Length: 1305 bp
ATGGGAGGTGCCGCGAAATTGTCCCTACAAATTAATCGTCTTGTTGAGGTAGTTGAGGCTAGGAGTACCACAACGTTTGCATTGATAAAAGGTTCACAATCTACTAGTGTTTCTGAAGTAATGAAGGTTATGGATATGGACATTTTAGAGGAGGAGGAAGAGGAGAGTAGTAGAATTGTCTGCATTTGTGCTTCTATGATAGAAATGTATCATGAAAAGTATATTCATAAGGTCCCTTGTATGAATTCTTTATACACTGGTAACATTTGGGTGATGGAATTACAATCAGGGAATGACACTCGTTGTCATAACATGTTCCGGATGAACAAAGATGTATTCTTTAAATTGTGTGATGATTTGAAGAATACTTATAAGGTGAAAGCTTCCCGGAGAATAAGTGTGGCTGAGAAGGTGGCAATGTTTTTGTACACTTTAGGAGGAAGTGAAGCAAACAGAAGTGTACAAGAGCGATTTCAACACTCTGGTGAGACAGTTAGTAGATACTTCAATAAAATGCTCAATGCTCAATGTGATGTCATGGCAAAAGATTTCATCAAGCCATCAGATCCCGAGTTCAAAAGCACTCCACCTGAAATACTTGGTGATTCTAGATATATGCCTCACTTTAAGGATTGTATTGGAGCTATAGATGGCGTGCATGTTCATGCAACTATATCACCATCAGATCAAGTACCATACATTGGCAGAAAAGGAATACCGACTCAGAATATAATGGCAGTATGCAACTTTGACATGCAATTTACATTTGCATGTGCAGGTTGGGAAGGCACTACCCACGATGCAAGAATATTCCAATCAGTAATTCACAATCCAGCTTTGAACTTTCCTAAACCTCCAAGTGGAAAATACTATTTGGTGGATGCAGGATACCCACAAATGAAAGGGTATTTGGGACCATACAAGTGTCAAAGGTATCATCTTCCTGAATTTCGCAGAGGTGCTCAACCAACAGGTTATAAAGAGGTATTTAATCATGCACACTCTTCCCTCAGGGGCGTTATTGAACGCACTTTTGGTGTGTGGAAAAAAAGATGGAATATTTTACGGGACATGCCAAGTTACTCATTTGATAAGCAAGTTAAAATTGTTATAGCAACAATGACACTTCACAACTATATAAGAAGGTATGCCGTACGTGATTTAGTTTTTGATGAAAGTGAAACCTTTGATGACATTGAAGAGAATGGGAGAGAGGATGATGCACGTGGTCACGGTCATGTTTCTAGAGAGATGGAGGCATTGAGAAATAGGATTGCTTCAAGTTTGATGGGTGCACGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

435

Amino Acids

49.6

Weight (kDa)

7.97

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 83 - 177 7.4e-38 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 209 - 377 3.7e-11 Transposase DDE domain
DDE_Tnp_4 PF13359 216 - 378 8.8e-24 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 372, 978
Acc36I ACCTGC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 701
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 318
AciI CCGC 1 cut(s) 12
AclI AACGTT 1 cut(s) 74
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 2 cut(s) 244, 947
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 1226
AfaI GTAC 5 cut(s) 67, 428, 462, 693, 1155
AfiI CCNNNNNNNGG 2 cut(s) 701, 860
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 8 cut(s) 361, 476, 508, 577, 841, 1025, 1199, 1281
AhlI ACTAGT 1 cut(s) 104
AjuI GAANNNNNNNTTGG 6 cut(s) 807, 839, 893, 925, 1017, 1049
AleI CACNNNNGTG 1 cut(s) 483
AluBI AGCT 3 cut(s) 383, 644, 836
AluI AGCT 3 cut(s) 383, 644, 836
Alw21I GWGCWC 2 cut(s) 964, 1297
Alw26I GTCTC 1 cut(s) 482
Alw44I GTGCAC 1 cut(s) 1293
AlwI GGATC 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 318
ApaLI GTGCAC 1 cut(s) 1293
ApoI RAATTY 2 cut(s) 244, 947
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AseI ATTAAT 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 232, 914
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 5 cut(s) 283, 388, 497, 614, 669
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 2 cut(s) 232, 914
AxyI CCTNAGG 1 cut(s) 1010
BaeGI GKGCMC 1 cut(s) 1297
BanI GGYRCC 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 1226
Bbv12I GWGCWC 2 cut(s) 964, 1297
BccI CCATC 7 cut(s) 268, 568, 644, 688, 1047, 1246, 1282
BceAI ACGGC 1 cut(s) 1136
BciVI GTATCC 1 cut(s) 881
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 482
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 4 cut(s) 60, 105, 609, 1245
BfmI CTRYAG 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 767
BfuI GTATCC 1 cut(s) 881
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 232, 914
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 2 cut(s) 232, 914
BmiI GGNNCC 3 cut(s) 10, 234, 915
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 3 cut(s) 790, 871, 1210
BpuMI CCSGG 1 cut(s) 388
BsaAI YACGTR 2 cut(s) 1157, 1226
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 860
Bse1I ACTGG 1 cut(s) 262
Bse21I CCTNAGG 1 cut(s) 1010
Bse3DI GCAATG 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 318
BseGI GGATG 3 cut(s) 327, 886, 1222
BseLI CCNNNNNNNGG 2 cut(s) 701, 860
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 396, 737, 1024
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 3 cut(s) 164, 167, 176
BseSI GKGCMC 1 cut(s) 1297
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 964, 1297
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 2 cut(s) 319, 388
BsiWI CGTACG 1 cut(s) 1153
BslFI GGGAC 4 cut(s) 7, 218, 927, 1082
BslI CCNNNNNNNGG 2 cut(s) 701, 860
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 4 cut(s) 7, 218, 927, 1082
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 964, 1297
Bsp13I TCCGGA 1 cut(s) 318
Bsp1407I TGTACA 2 cut(s) 426, 460
Bsp143I GATC 2 cut(s) 565, 685
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 3 cut(s) 397, 736, 1023
BspEI TCCGGA 1 cut(s) 318
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 3 cut(s) 10, 234, 915
BspMI ACCTGC 1 cut(s) 767
BspPI GGATC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 423
BsrGI TGTACA 2 cut(s) 426, 460
BsrI ACTGG 1 cut(s) 262
BssMI GATC 2 cut(s) 565, 685
Bst4CI ACNGT 2 cut(s) 493, 1235
Bst6I CTCTTC 3 cut(s) 153, 1009, 1194
BstAUI TGTACA 2 cut(s) 426, 460
BstBAI YACGTR 2 cut(s) 1157, 1226
BstC8I GCNNGC 1 cut(s) 656
BstDEI CTNAG 3 cut(s) 405, 723, 1010
BstF5I GGATG 3 cut(s) 327, 886, 1222
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 2 cut(s) 568, 688
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 565, 685
BstNSI RCATGY 5 cut(s) 316, 662, 757, 774, 1075
BstSCI CCNGG 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 1297
BstUI CGCG 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 1010
BsuI GTATCC 1 cut(s) 881
BtsCI GGATG 3 cut(s) 327, 886, 1222
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 767
Cac8I GCNNGC 1 cut(s) 656
CciI TCATGA 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 232, 914
Csp6I GTAC 5 cut(s) 66, 427, 461, 692, 1154
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviJI RGCY 6 cut(s) 59, 383, 404, 559, 644, 836
CviKI_1 RGCY 6 cut(s) 59, 383, 404, 559, 644, 836
CviQI GTAC 5 cut(s) 66, 427, 461, 692, 1154
DdeI CTNAG 3 cut(s) 405, 723, 1010
DpnI GATC 2 cut(s) 567, 687
DpnII GATC 2 cut(s) 565, 685
DraI TTTAAA 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 153, 1009, 1194
EarI CTCTTC 3 cut(s) 153, 1009, 1194
Eco47I GGWCC 2 cut(s) 232, 914
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 1226
Eco81I CCTNAGG 1 cut(s) 1010
Eco88I CYCGRG 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 244
FaqI GGGAC 4 cut(s) 7, 218, 927, 1082
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 3 cut(s) 334, 893, 1229
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 4 cut(s) 60, 105, 609, 1245
GluI GCNGC 1 cut(s) 12
HapII CCGG 2 cut(s) 319, 388
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 2 cut(s) 605, 721
HpaII CCGG 2 cut(s) 319, 388
HphI GGTGA 5 cut(s) 283, 388, 497, 614, 669
Hpy166II GTNNAC 4 cut(s) 95, 429, 461, 1295
Hpy188I TCNGA 4 cut(s) 115, 565, 685, 726
Hpy188III TCNNGA 6 cut(s) 212, 319, 569, 609, 944, 1245
Hpy8I GTNNAC 4 cut(s) 95, 429, 461, 1295
HpyAV CCTTC 4 cut(s) 118, 403, 779, 1137
HpyCH4III ACNGT 2 cut(s) 493, 1235
HpyCH4IV ACGT 3 cut(s) 74, 1156, 1225
HpyF3I CTNAG 3 cut(s) 405, 723, 1010
HpySE526I ACGT 3 cut(s) 74, 1156, 1225
Kpn2I TCCGGA 1 cut(s) 318
Kzo9I GATC 2 cut(s) 565, 685
LmnI GCTCC 1 cut(s) 641
LweI GCATC 3 cut(s) 790, 871, 1210
MaeI CTAG 4 cut(s) 60, 105, 609, 1245
MaeII ACGT 3 cut(s) 74, 1156, 1225
MaeIII GTNAC 3 cut(s) 260, 1079, 1229
MalI GATC 2 cut(s) 567, 687
MboI GATC 2 cut(s) 565, 685
MboII GAAGA 5 cut(s) 170, 373, 932, 996, 1211
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 2 cut(s) 964, 1297
MlyI GAGTC 1 cut(s) 715
MroI TCCGGA 1 cut(s) 318
MseI TTAA 6 cut(s) 33, 342, 627, 990, 1101, 1303
MslI CAYNNNNRTG 6 cut(s) 269, 483, 663, 769, 922, 1236
MspI CCGG 2 cut(s) 319, 388
MspR9I CCNGG 1 cut(s) 388
MvnI CGCG 1 cut(s) 14
NciI CCSGG 1 cut(s) 388
NdeII GATC 2 cut(s) 565, 685
NlaIV GGNNCC 3 cut(s) 10, 234, 915
NmuCI GTSAC 1 cut(s) 1229
NspI RCATGY 5 cut(s) 316, 662, 757, 774, 1075
OliI CACNNNNGTG 1 cut(s) 483
PagI TCATGA 1 cut(s) 211
PciI ACATGT 1 cut(s) 312
PfeI GAWTC 1 cut(s) 605
Pfl23II CGTACG 1 cut(s) 1153
PflMI CCANNNNNTGG 1 cut(s) 701
PfoI TCCNGGA 1 cut(s) 386
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 715
PmaCI CACGTG 1 cut(s) 1226
PmlI CACGTG 1 cut(s) 1226
PpsI GAGTC 1 cut(s) 715
Ppu21I YACGTR 2 cut(s) 1157, 1226
PpuMI RGGWCCY 1 cut(s) 232
PscI ACATGT 1 cut(s) 312
PshBI ATTAAT 1 cut(s) 33
PsiI TTATAA 2 cut(s) 372, 978
Psp1406I AACGTT 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 232
PspCI CACGTG 1 cut(s) 1226
PspLI CGTACG 1 cut(s) 1153
PspN4I GGNNCC 3 cut(s) 10, 234, 915
PspPI GGNCC 2 cut(s) 232, 914
PspPPI RGGWCCY 1 cut(s) 232
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 5 cut(s) 67, 428, 462, 693, 1155
RsaNI GTAC 5 cut(s) 66, 427, 461, 692, 1154
RseI CAYNNNNRTG 6 cut(s) 269, 483, 663, 769, 922, 1236
SaqAI TTAA 6 cut(s) 33, 342, 627, 990, 1101, 1303
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 565, 685
Sau96I GGNCC 2 cut(s) 232, 914
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 2 cut(s) 964, 1297
SfaNI GCATC 3 cut(s) 790, 871, 1210
SfcI CTRYAG 1 cut(s) 645
SinI GGWCC 2 cut(s) 232, 914
SmiMI CAYNNNNRTG 6 cut(s) 269, 483, 663, 769, 922, 1236
SpeI ACTAGT 1 cut(s) 104
SsiI CCGC 1 cut(s) 12
SspI AATATT 2 cut(s) 810, 1060
SspMI CTAG 4 cut(s) 60, 105, 609, 1245
StyD4I CCNGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 493, 1235
TaiI ACGT 3 cut(s) 77, 1159, 1228
TatI WGTACW 2 cut(s) 426, 460
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 6 cut(s) 33, 342, 627, 990, 1101, 1303
Tru9I TTAA 6 cut(s) 33, 342, 627, 990, 1101, 1303
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 1229
Tsp45I GTSAC 1 cut(s) 1229
TspDTI ATGAA 9 cut(s) 137, 215, 228, 257, 338, 541, 653, 914, 1188
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 701
VneI GTGCAC 1 cut(s) 1293
VpaK11BI GGWCC 2 cut(s) 232, 914
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 2 cut(s) 244, 947
XbaI TCTAGA 2 cut(s) 608, 1244
XceI RCATGY 5 cut(s) 316, 662, 757, 774, 1075
XspI CTAG 4 cut(s) 60, 105, 609, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.