FvH4_6g30381
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000469
Physical Location & Seq
Forward (+)
23454121 .. 23458378
4258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30381.t1

Sequence Viewer

Length: 984 bp
ATGAATATGGACATTTTGGCAGAGGAGGAGGAGGAAATTAACCGAATTATTTGTGTTTGTGCTTCTATTATTGAACTATACTATGAAAAATATATTCATAAAATTCCATGTATGGATTCTTCCTACACTGGCAACATTTGGTTGATGAAATTGTTGGAAGGGAATGAGAGTCGTTGTCATAACATGTTTCGCATGAATAAAGATGTATTTATGAGATTGTGTAATGATTTAGAGAATATTTATAAGCTGAAGGGTTCTCGGAGAATTTGTATTGCCGAGAAGTTGGGAATGTTTTTATATACTTTAGGAGAAGGTGCAGGAAATAGGAATGTACAAGAGCGGTTCCAACATTCTGGCGAGACTGTTAGCAGATATTTTAGTGAATTGCTGGATGTGATTTGTGTTATGGCAACAGAACTCATAAAACCTCTTGATCCTGAGTTCAAGAATACTCCAGCAGAAATATTGGGAGATTCTAGATACATGCCTCATTTCAAGGATTGTATTGGAGCTATAGATGACATACATGTTCAAGCCAAAATATCACCTTCTGAGCAAGTACCATATATTGGTCGAAAAGGGATACCTACTCAGAATATAATGGCTGTATGCAACTTTGACATGCAATTCACTTTTGCATGTGCGGGATGGGAAGGCACTGCTCACGATGCAAGGGTATTTCAATCAGCAGTTCAAAATCCAACCTCGAATTTTCCTAAACCTCCAAATGGGAAATACTATGTGGTGGATGCAGGATACCCACAAATCAAAGGGTATTTAGGACCGTATAAATGTCAAAGGTACCATCTTCCAGATTTTCGCAGAGGTGCCCAACCAACAGATTATAAAGAGGTTTTCAATCATGCACATTCCTCCCTCAGAAGTGTTATTGAACGAACTTTTGGAGTATGGAAAAAAAGATGGAATATTCTACGGGACATGCCTACTTATCCATTTGACAAACAAGTGAAAATTGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

328

Amino Acids

37.82

Weight (kDa)

7.53

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 40 - 134 4.6e-38 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 165 - 313 5.1e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 174 - 313 5.5e-20 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 243, 846
Acc65I GGTACC 1 cut(s) 801
AccB1I GGYRCC 2 cut(s) 801, 827
AccB7I CCANNNNNTGG 1 cut(s) 569
AccBSI CCGCTC 1 cut(s) 340
AciI CCGC 2 cut(s) 340, 644
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 3 cut(s) 102, 264, 709
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 3 cut(s) 333, 561, 803
AfiI CCNNNNNNNGG 2 cut(s) 569, 728
AflIII ACRYGT 2 cut(s) 183, 526
AgsI TTSAA 8 cut(s) 74, 445, 496, 533, 683, 695, 859, 893
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 2 cut(s) 247, 512
AluI AGCT 2 cut(s) 247, 512
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 428
ApoI RAATTY 3 cut(s) 102, 264, 709
Asp718I GGTACC 1 cut(s) 801
AspS9I GGNCC 1 cut(s) 782
AsuHPI GGTGA 1 cut(s) 537
AvaII GGWCC 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 832
BanI GGYRCC 2 cut(s) 801, 827
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BccI CCATC 3 cut(s) 642, 813, 915
BciVI GTATCC 2 cut(s) 576, 749
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 513
BfuI GTATCC 2 cut(s) 576, 749
Bme18I GGWCC 1 cut(s) 782
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 3 cut(s) 344, 803, 829
BmsI GCATC 2 cut(s) 658, 739
BpmI CTGGAG 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 728
Bse1I ACTGG 1 cut(s) 133
BseGI GGATG 3 cut(s) 397, 653, 754
BseLI CCNNNNNNNGG 2 cut(s) 569, 728
BseMII CTCAG 4 cut(s) 429, 543, 605, 892
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 3 cut(s) 38, 41, 44
BseSI GKGCMC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 336
BshNI GGYRCC 2 cut(s) 801, 827
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 2 cut(s) 569, 728
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 950
Bsp1286I GDGCHC 1 cut(s) 832
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 2 cut(s) 340, 644
BspCNI CTCAG 4 cut(s) 430, 544, 604, 891
BspLI GGNNCC 3 cut(s) 344, 803, 829
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 2 cut(s) 801, 827
BsrBI CCGCTC 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 1 cut(s) 133
BssMI GATC 1 cut(s) 433
Bst4CI ACNGT 2 cut(s) 364, 786
BstAUI TGTACA 1 cut(s) 331
BstDEI CTNAG 4 cut(s) 438, 552, 591, 878
BstF5I GGATG 3 cut(s) 397, 653, 754
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNSI RCATGY 6 cut(s) 187, 487, 530, 625, 642, 943
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 832
BstXI CCANNNNNNTGG 1 cut(s) 353
BsuI GTATCC 2 cut(s) 576, 749
BtsCI GGATG 3 cut(s) 397, 653, 754
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 2 cut(s) 126, 657
Cfr13I GGNCC 1 cut(s) 782
Csp6I GTAC 3 cut(s) 332, 560, 802
CviAII CATG 9 cut(s) 108, 184, 193, 484, 527, 622, 639, 863, 940
CviJI RGCY 4 cut(s) 247, 512, 536, 605
CviKI_1 RGCY 4 cut(s) 247, 512, 536, 605
CviQI GTAC 3 cut(s) 332, 560, 802
DdeI CTNAG 4 cut(s) 438, 552, 591, 878
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 269
FaeI CATG 9 cut(s) 111, 187, 196, 487, 530, 625, 642, 866, 943
FaqI GGGAC 1 cut(s) 950
FatI CATG 9 cut(s) 107, 183, 192, 483, 526, 621, 638, 862, 939
FauI CCCGC 1 cut(s) 637
FokI GGATG 3 cut(s) 404, 660, 761
FspBI CTAG 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 438
Hin1II CATG 9 cut(s) 111, 187, 196, 487, 530, 625, 642, 866, 943
HinfI GANTC 3 cut(s) 116, 169, 473
HphI GGTGA 1 cut(s) 537
Hpy188I TCNGA 4 cut(s) 261, 553, 594, 881
Hpy188III TCNNGA 6 cut(s) 431, 437, 445, 477, 665, 812
HpyAV CCTTC 5 cut(s) 152, 244, 305, 558, 647
HpyCH4III ACNGT 2 cut(s) 364, 786
HpyCH4V TGCA 7 cut(s) 317, 612, 625, 638, 671, 752, 866
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 4 cut(s) 438, 552, 591, 878
Hsp92II CATG 9 cut(s) 111, 187, 196, 487, 530, 625, 642, 866, 943
KpnI GGTACC 1 cut(s) 805
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 509
LpnPI CCDG 8 cut(s) 114, 303, 339, 374, 450, 468, 738, 825
LweI GCATC 2 cut(s) 658, 739
MaeI CTAG 1 cut(s) 477
MalI GATC 1 cut(s) 435
MbiI CCGCTC 1 cut(s) 340
MboI GATC 1 cut(s) 433
MboII GAAGA 2 cut(s) 111, 800
MhlI GDGCHC 1 cut(s) 832
MluCI AATT 9 cut(s) 36, 45, 102, 149, 264, 383, 626, 709, 972
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 3 cut(s) 135, 370, 725
MseI TTAA 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 668
NdeII GATC 1 cut(s) 433
NlaIII CATG 9 cut(s) 111, 187, 196, 487, 530, 625, 642, 866, 943
NlaIV GGNNCC 3 cut(s) 344, 803, 829
NmeAIII GCCGAG 1 cut(s) 301
NspI RCATGY 6 cut(s) 187, 487, 530, 625, 642, 943
PciI ACATGT 2 cut(s) 183, 526
PfeI GAWTC 2 cut(s) 116, 473
PflMI CCANNNNNTGG 1 cut(s) 569
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PscI ACATGT 2 cut(s) 183, 526
PsiI TTATAA 2 cut(s) 243, 846
PspN4I GGNNCC 3 cut(s) 344, 803, 829
PspPI GGNCC 1 cut(s) 782
RsaI GTAC 3 cut(s) 333, 561, 803
RsaNI GTAC 3 cut(s) 332, 560, 802
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 1 cut(s) 782
SchI GAGTC 1 cut(s) 178
SduI GDGCHC 1 cut(s) 832
SfaNI GCATC 2 cut(s) 658, 739
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 782
Sse9I AATT 9 cut(s) 36, 45, 102, 149, 264, 383, 626, 709, 972
SsiI CCGC 2 cut(s) 340, 644
SspI AATATT 3 cut(s) 238, 465, 928
SspMI CTAG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 364, 786
TaqI TCGA 2 cut(s) 574, 707
TasI AATT 9 cut(s) 36, 45, 102, 149, 264, 383, 626, 709, 972
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 2 cut(s) 116, 473
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 2 cut(s) 133, 664
TspDTI ATGAA 5 cut(s) 17, 86, 99, 161, 209
TspRI CASTG 2 cut(s) 133, 664
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 782
XapI RAATTY 3 cut(s) 102, 264, 709
XbaI TCTAGA 1 cut(s) 476
XceI RCATGY 6 cut(s) 187, 487, 530, 625, 642, 943
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.