RchiOBHm_Chr2g0085491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000469
Physical Location & Seq
Forward (+)
889916 .. 891715
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46104

Sequence Viewer

Length: 174 bp
ATGATTAAATTTGACAACAATCTTACAGTCAGCAATGAAAGTGAAGATTACTCAAGTGAAGACAACAATGAAGAGATGGAAGACAATGCATACGAAGAAGATGGTCCGGGAAGACCAGAAATGGAGATGTTAAGAAATACAATTGCACAAAGTCTAATGAATGAATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.57

Weight (kDa)

4.05

Isoelectric Point (pI)

69.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 108
AvaII GGWCC 1 cut(s) 104
BbsI GAAGAC 3 cut(s) 66, 87, 118
BccI CCATC 2 cut(s) 70, 95
BcnI CCSGG 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 108
BpiI GAAGAC 3 cut(s) 66, 87, 118
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 106
BstV2I GAAGAC 3 cut(s) 66, 87, 118
Cfr13I GGNCC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 91
FaiI YATR 1 cut(s) 91
FspEI CC 7 cut(s) 62, 87, 92, 93, 107, 120, 129
HapII CCGG 1 cut(s) 107
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 89, 146
HpyF3I CTNAG 1 cut(s) 171
LpnPI CCDG 2 cut(s) 120, 129
MboII GAAGA 7 cut(s) 56, 71, 83, 92, 107, 110, 123
MfeI CAATTG 1 cut(s) 141
MluCI AATT 2 cut(s) 8, 141
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 2 cut(s) 6, 131
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 141
NciI CCSGG 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 91
PfeI GAWTC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 106
PspPI GGNCC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 6, 131
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 108
SgeI CNNG 4 cut(s) 66, 119, 120, 128
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 8, 141
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 28
TasI AATT 2 cut(s) 8, 141
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 6, 131
Tru9I TTAA 2 cut(s) 6, 131
TspDTI ATGAA 3 cut(s) 51, 84, 173
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.