Rmu_sc0001939.1_g000006
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001939.1
OG0000469
Physical Location & Seq
Reverse (-)
32337 .. 34255
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001939.1_g000006.1.cds

Sequence Viewer

Length: 1311 bp
atgttagaagatgaggaagaggcttctcaacatcttgtccaagctacctgtgtatttgctcgtataattgaagcatattatatgaaatacatccataaaactccttttctgaattcttcctacacaggaaatatatggattatggaattgttgcatgggaatgacgaacgattctctagaatgatgagaatggacaagcgtgtgttttatagattatgcagtgagttgcagaacaagtatgagcttgagggttcacaaagaatgagtgcttttgagatattaggaatgttcttacacattttaggacatggggtagtaaatagattagcacaagaacgatttcaacactctggtgagactgtgagtagatatttcacttatgttttggatatggtgtgtaacttggctatagaagtcatacaaccagaggatcgtgagttcaagaacactgcaccacagatattgagggattctagatatatgcctcattttaaggattgtatcggtgccatagacggtgtacatgttcgtgcttcaattcgtcctgcagatcaaataccctatattggaagaaaagggatgccgactcaaaacataatggctgcatgtaactttgatatgcaattcatatttgcatgtgcaggttgggaaggtactgcacatgatacaaggattttcttatctgccatacggaatcctaagtggaattttcccaagcctcctagtggatacccccaaatgaaagggtacctgggaccatataaaaataacacatatcatcttccagattttcgtaggggtggtggcccgacaggccctaaggaggtattcaactacgtgcactcttctctcagaagcgtcattgaacgcacttttggagtctggaagaaaaagtggaagattttaagggacatgcctaactatccgtttgacaagcaagtgaagataatcattgcaaccatggcacttcataactacataaggagacatgctgaaaacgataaacattttgataaacatgggagcgagaatagcactgaagcttataagaccactgatatagaggatgatacacaaggagatcatcgtagtcgtcatgatgtcggtgcacaagaaatggaactgattattcttacagtctaccatgaacaggaggactgggaggaatcgagaaggctcggctgtggccaggtcgaagagcttattgaggaggcacgtgacaagcttaccctcatcaaaaagatcagtcgcagagccacattgaggcagagtgggacatgggacccactagagtttttacatataaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

436

Amino Acids

50.97

Weight (kDa)

7.31

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1047
Acc36I ACCTGC 1 cut(s) 632
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 506, 747
AccI GTMKAC 1 cut(s) 1140
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 2 cut(s) 112, 706
AcuI CTGAAG 1 cut(s) 1059
AcvI CACGTG 1 cut(s) 1217
AfaI GTAC 3 cut(s) 522, 655, 749
AfiI CCNNNNNNNGG 5 cut(s) 566, 725, 823, 1150, 1263
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 6 cut(s) 71, 344, 442, 537, 832, 866
AjnI CCWGG 2 cut(s) 750, 1188
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AleI CACNNNNGTG 1 cut(s) 351
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
AluBI AGCT 5 cut(s) 44, 244, 1043, 1201, 1225
AluI AGCT 5 cut(s) 44, 244, 1043, 1201, 1225
Alw21I GWGCWC 2 cut(s) 843, 1111
Alw26I GTCTC 2 cut(s) 350, 979
Alw44I GTGCAC 2 cut(s) 839, 1107
AlwI GGATC 1 cut(s) 438
AoxI GGCC 3 cut(s) 805, 814, 1186
ApaLI GTGCAC 2 cut(s) 839, 1107
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 2 cut(s) 112, 706
Asp700I GAANNNNTTC 1 cut(s) 339
Asp718I GGTACC 1 cut(s) 747
AspS9I GGNCC 4 cut(s) 755, 806, 815, 1282
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 2 cut(s) 755, 1282
AxyI CCTNAGG 1 cut(s) 819
BaeGI GKGCMC 2 cut(s) 843, 1111
BalI TGGCCA 1 cut(s) 1188
BanI GGYRCC 2 cut(s) 506, 747
BbrPI CACGTG 1 cut(s) 1217
Bbv12I GWGCWC 2 cut(s) 843, 1111
BbvI GCAGC 1 cut(s) 589
BciT130I CCWGG 2 cut(s) 752, 1190
BciVI GTATCC 1 cut(s) 722
BcoDI GTCTC 2 cut(s) 350, 979
BfaI CTAG 4 cut(s) 177, 474, 723, 1289
BfmI CTRYAG 2 cut(s) 408, 546
BfuAI ACCTGC 1 cut(s) 632
BfuI GTATCC 1 cut(s) 722
BglI GCCNNNNNGGC 1 cut(s) 813
BisI GCNGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 604
Bme1390I CCNGG 2 cut(s) 752, 1190
Bme18I GGWCC 2 cut(s) 755, 1282
BmgT120I GGNCC 4 cut(s) 755, 806, 815, 1282
BmiI GGNNCC 5 cut(s) 508, 749, 756, 1283, 1284
BmrFI CCNGG 2 cut(s) 752, 1190
BmrI ACTGGG 1 cut(s) 1168
BmsI GCATC 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 1168
BpuEI CTTGAG 1 cut(s) 266
BsaAI YACGTR 2 cut(s) 838, 1217
BsaJI CCNNGG 2 cut(s) 751, 960
Bsc4I CCNNNNNNNGG 5 cut(s) 566, 725, 823, 1150, 1263
Bse1I ACTGG 1 cut(s) 1163
Bse21I CCTNAGG 1 cut(s) 819
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 2 cut(s) 752, 1190
BseDI CCNNGG 2 cut(s) 751, 960
BseGI GGATG 3 cut(s) 90, 585, 1072
BseLI CCNNNNNNNGG 5 cut(s) 566, 725, 823, 1150, 1263
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 1 cut(s) 865
BseNI ACTGG 1 cut(s) 1163
BseRI GAGGAG 1 cut(s) 1223
BseSI GKGCMC 2 cut(s) 843, 1111
BseXI GCAGC 1 cut(s) 589
BsgI GTGCAG 3 cut(s) 435, 642, 660
BshFI GGCC 3 cut(s) 807, 816, 1188
BshNI GGYRCC 2 cut(s) 506, 747
BsiHKAI GWGCWC 2 cut(s) 843, 1111
BslFI GGGAC 4 cut(s) 768, 923, 1288, 1295
BslI CCNNNNNNNGG 5 cut(s) 566, 725, 823, 1150, 1263
BsmAI GTCTC 2 cut(s) 350, 979
BsmFI GGGAC 4 cut(s) 768, 923, 1288, 1295
BsnI GGCC 3 cut(s) 807, 816, 1188
Bsp1286I GDGCHC 2 cut(s) 843, 1111
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 4 cut(s) 430, 550, 1081, 1242
Bsp19I CCATGG 1 cut(s) 960
BspANI GGCC 3 cut(s) 807, 816, 1188
BspCNI CTCAG 1 cut(s) 864
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 5 cut(s) 508, 749, 756, 1283, 1284
BspMAI CTGCAG 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 1191
BspT107I GGYRCC 2 cut(s) 506, 747
BsrDI GCAATG 1 cut(s) 951
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 1 cut(s) 1163
BssECI CCNNGG 2 cut(s) 751, 960
BssMI GATC 4 cut(s) 430, 550, 1081, 1242
BssT1I CCWWGG 1 cut(s) 960
Bst2UI CCWGG 2 cut(s) 752, 1190
Bst4CI ACNGT 3 cut(s) 361, 518, 1138
Bst6I CTCTTC 3 cut(s) 12, 850, 1191
BstAUI TGTACA 1 cut(s) 520
BstBAI YACGTR 2 cut(s) 838, 1217
BstDEI CTNAG 3 cut(s) 699, 819, 851
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 3 cut(s) 90, 585, 1072
BstKTI GATC 4 cut(s) 433, 553, 1084, 1245
BstMAI GTCTC 2 cut(s) 350, 979
BstMBI GATC 4 cut(s) 430, 550, 1081, 1242
BstMWI GCNNNNNNNGC 3 cut(s) 813, 962, 1032
BstNI CCWGG 2 cut(s) 752, 1190
BstNSI RCATGY 5 cut(s) 527, 609, 639, 916, 992
BstSCI CCNGG 2 cut(s) 750, 1188
BstSFI CTRYAG 2 cut(s) 408, 546
BstSLI GKGCMC 2 cut(s) 843, 1111
BstV1I GCAGC 1 cut(s) 589
Bsu36I CCTNAGG 1 cut(s) 819
BsuI GTATCC 1 cut(s) 722
BsuRI GGCC 3 cut(s) 807, 816, 1188
BtgI CCRYGG 1 cut(s) 960
BtsCI GGATG 3 cut(s) 90, 585, 1072
BtsI GCAGTG 2 cut(s) 226, 447
BtsIMutI CAGTG 4 cut(s) 226, 447, 1035, 1053
BveI ACCTGC 1 cut(s) 632
CciI TCATGA 1 cut(s) 1096
Cfr13I GGNCC 4 cut(s) 755, 806, 815, 1282
CseI GACGC 1 cut(s) 847
Csp6I GTAC 3 cut(s) 521, 654, 748
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviQI GTAC 3 cut(s) 521, 654, 748
DdeI CTNAG 3 cut(s) 699, 819, 851
DpnI GATC 4 cut(s) 432, 552, 1083, 1244
DpnII GATC 4 cut(s) 430, 550, 1081, 1242
EaeI YGGCCR 1 cut(s) 1186
Eam1104I CTCTTC 3 cut(s) 12, 850, 1191
EarI CTCTTC 3 cut(s) 12, 850, 1191
Eco130I CCWWGG 1 cut(s) 960
Eco47I GGWCC 2 cut(s) 755, 1282
Eco57I CTGAAG 1 cut(s) 1059
Eco72I CACGTG 1 cut(s) 1217
Eco81I CCTNAGG 1 cut(s) 819
EcoO109I RGGNCCY 2 cut(s) 815, 1282
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 750, 1188
EcoT14I CCWWGG 1 cut(s) 960
ErhI CCWWGG 1 cut(s) 960
FaqI GGGAC 4 cut(s) 768, 923, 1288, 1295
FblI GTMKAC 1 cut(s) 1140
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 3 cut(s) 77, 592, 1079
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 4 cut(s) 177, 474, 723, 1289
GluI GCNGC 1 cut(s) 603
HaeIII GGCC 3 cut(s) 807, 816, 1188
HgaI GACGC 1 cut(s) 847
HindIII AAGCTT 2 cut(s) 1041, 1223
HinfI GANTC 6 cut(s) 171, 470, 586, 694, 879, 1166
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 5 cut(s) 254, 521, 841, 1109, 1141
Hpy188I TCNGA 2 cut(s) 111, 854
Hpy188III TCNNGA 8 cut(s) 177, 434, 442, 474, 785, 883, 1097, 1170
Hpy8I GTNNAC 5 cut(s) 254, 521, 841, 1109, 1141
HpyAV CCTTC 2 cut(s) 644, 1167
HpyCH4III ACNGT 3 cut(s) 361, 518, 1138
HpyCH4IV ACGT 2 cut(s) 837, 1216
HpyF10VI GCNNNNNNNGC 3 cut(s) 813, 962, 1032
HpyF3I CTNAG 3 cut(s) 699, 819, 851
HpySE526I ACGT 2 cut(s) 837, 1216
KflI GGGWCCC 1 cut(s) 1282
KpnI GGTACC 1 cut(s) 751
Kzo9I GATC 4 cut(s) 430, 550, 1081, 1242
LguI GCTCTTC 1 cut(s) 1191
LmnI GCTCC 1 cut(s) 1023
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 1 cut(s) 570
MaeI CTAG 4 cut(s) 177, 474, 723, 1289
MaeII ACGT 2 cut(s) 837, 1216
MaeIII GTNAC 3 cut(s) 398, 608, 1217
MalI GATC 4 cut(s) 432, 552, 1083, 1244
MboI GATC 4 cut(s) 430, 550, 1081, 1242
MhlI GDGCHC 2 cut(s) 843, 1111
MlsI TGGCCA 1 cut(s) 1188
MluCI AATT 6 cut(s) 66, 112, 146, 537, 623, 706
MluNI TGGCCA 1 cut(s) 1188
MlyI GAGTC 2 cut(s) 580, 888
Mox20I TGGCCA 1 cut(s) 1188
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 1 cut(s) 1188
MseI TTAA 2 cut(s) 492, 905
MslI CAYNNNNRTG 3 cut(s) 159, 351, 528
Msp20I TGGCCA 1 cut(s) 1188
MspR9I CCNGG 2 cut(s) 752, 1190
MvaI CCWGG 2 cut(s) 752, 1190
MwoI GCNNNNNNNGC 3 cut(s) 813, 962, 1032
NcoI CCATGG 1 cut(s) 960
NdeII GATC 4 cut(s) 430, 550, 1081, 1242
NlaIV GGNNCC 5 cut(s) 508, 749, 756, 1283, 1284
NmeAIII GCCGAG 1 cut(s) 1158
NmuCI GTSAC 1 cut(s) 1217
NspI RCATGY 5 cut(s) 527, 609, 639, 916, 992
OliI CACNNNNGTG 1 cut(s) 351
PagI TCATGA 1 cut(s) 1096
PciI ACATGT 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 1191
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 4 cut(s) 171, 470, 694, 1166
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 2 cut(s) 580, 887
PmaCI CACGTG 1 cut(s) 1217
PmlI CACGTG 1 cut(s) 1217
PpsI GAGTC 2 cut(s) 580, 887
Ppu21I YACGTR 2 cut(s) 838, 1217
PpuMI RGGWCCY 1 cut(s) 1282
PscI ACATGT 1 cut(s) 523
PsiI TTATAA 1 cut(s) 1047
Psp5II RGGWCCY 1 cut(s) 1282
Psp6I CCWGG 2 cut(s) 750, 1188
PspCI CACGTG 1 cut(s) 1217
PspGI CCWGG 2 cut(s) 750, 1188
PspN4I GGNNCC 5 cut(s) 508, 749, 756, 1283, 1284
PspPI GGNCC 4 cut(s) 755, 806, 815, 1282
PspPPI RGGWCCY 1 cut(s) 1282
PstI CTGCAG 1 cut(s) 550
RsaI GTAC 3 cut(s) 522, 655, 749
RsaNI GTAC 3 cut(s) 521, 654, 748
RseI CAYNNNNRTG 3 cut(s) 159, 351, 528
SapI GCTCTTC 1 cut(s) 1191
SaqAI TTAA 2 cut(s) 492, 905
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 4 cut(s) 430, 550, 1081, 1242
Sau96I GGNCC 4 cut(s) 755, 806, 815, 1282
SchI GAGTC 2 cut(s) 580, 888
ScrFI CCNGG 2 cut(s) 752, 1190
SduI GDGCHC 2 cut(s) 843, 1111
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 2 cut(s) 408, 546
SfiI GGCCNNNNNGGCC 1 cut(s) 813
SinI GGWCC 2 cut(s) 755, 1282
SmiMI CAYNNNNRTG 3 cut(s) 159, 351, 528
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 6 cut(s) 66, 112, 146, 537, 623, 706
SspMI CTAG 4 cut(s) 177, 474, 723, 1289
StyD4I CCNGG 2 cut(s) 750, 1188
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 3 cut(s) 361, 518, 1138
TaiI ACGT 2 cut(s) 840, 1219
TaqI TCGA 2 cut(s) 1169, 1194
TasI AATT 6 cut(s) 66, 112, 146, 537, 623, 706
TatI WGTACW 1 cut(s) 520
TfiI GAWTC 4 cut(s) 171, 470, 694, 1166
Tru1I TTAA 2 cut(s) 492, 905
Tru9I TTAA 2 cut(s) 492, 905
TscAI CASTG 4 cut(s) 226, 454, 1042, 1060
TseFI GTSAC 1 cut(s) 1217
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 1217
TspDTI ATGAA 5 cut(s) 98, 616, 755, 959, 1161
TspGWI ACGGA 2 cut(s) 706, 915
TspRI CASTG 4 cut(s) 226, 454, 1042, 1060
VneI GTGCAC 2 cut(s) 839, 1107
VpaK11BI GGWCC 2 cut(s) 755, 1282
XapI RAATTY 2 cut(s) 112, 706
XbaI TCTAGA 2 cut(s) 176, 473
XceI RCATGY 5 cut(s) 527, 609, 639, 916, 992
XmiI GTMKAC 1 cut(s) 1140
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 4 cut(s) 177, 474, 723, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.