MD11G1151600.v1.1
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000469
Physical Location & Seq
Reverse (-)
14427908 .. 14432799
4892 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1151600.v1.1.491

Sequence Viewer

Length: 354 bp
ATGAGAGGTTATTTGGGACCATATAAAGGTGAAAGATATCATCTCCCAGACTTTCGTAGGGGTGCCGAACCAACGGGTCATAAAGTGGTATTCAACCACACACATTCTTCTCTTAGGAGCATCATTGAACGAACTTTTGGGGTATGGAAGAAAAAATGGTCAATTTTAAGGGATATGCCTAATTACCCGTTCAATAAGCAAGTGAAGATTGTCATTGCTACAATGGCTCTTCATAACTACATACGGAGGTATTCTGAACGTGATCGTCATTTTGATGACCCCAGAGACTATTGTGAAGAGAGCGATAGTAGTGATGATGATGATGAAGAATATCGAAATTATGAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

118

Amino Acids

14.18

Weight (kDa)

6.59

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 8 - 79 2.3e-09 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 4 cut(s) 94, 128, 193, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
Alw26I GTCTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 18, 64
BmsI GCATC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 62
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 18, 64
BspQI GCTCTTC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 213
BssMI GATC 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 234, 291
BstDEI CTNAG 1 cut(s) 113
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 17
CviJI RGCY 1 cut(s) 227
CviKI_1 RGCY 1 cut(s) 227
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 234, 291
EarI CTCTTC 2 cut(s) 234, 291
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 17
EcoRV GATATC 1 cut(s) 38
FaiI YATR 8 cut(s) 22, 24, 81, 145, 176, 234, 242, 342
FaqI GGGAC 1 cut(s) 30
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 259
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 60, 295
LweI GCATC 1 cut(s) 129
MaeII ACGT 1 cut(s) 259
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 6 cut(s) 99, 160, 217, 221, 308, 338
MluCI AATT 3 cut(s) 162, 181, 337
MnlI CCTC 1 cut(s) 240
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 18, 64
PciSI GCTCTTC 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 18, 64
PspPI GGNCC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 17
SetI ASST 4 cut(s) 10, 31, 251, 262
SfaNI GCATC 1 cut(s) 129
SgeI CNNG 6 cut(s) 59, 87, 199, 212, 272, 294
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 3 cut(s) 162, 181, 337
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 334
TasI AATT 3 cut(s) 162, 181, 337
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 221, 339
TspGWI ACGGA 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.