Rmu_sc0002160.1_g000015

phospholipase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002160.1
Physical Location & Seq
Forward (+)
75348 .. 76624
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002160.1_g000015.1.cds

Sequence Viewer

Length: 417 bp
atggatgcttttggggtatggaagaagaaattgagtattttacgtgatatgcctcactttccttatgaaaaacaagtgaagatagttattgctactatgattcttcataactacatacgaagatatgctcaacgagatattgattttgatgaaggtgaaaattactcaagtgaagagactagtgaagagatggaggataatgaacatgatggagatggtatgggaagacaagaaatggaggtgaatctaagaaagttgatgtacatcgataacttccatcagtttgatctacatttcaagaagcattgcgaggagggaaaattaccaaactatacagttgtggaacaaagattcttcgatctattgtccctccctgccaacgatgatcacccgtgtcatggcgtctcagagggctag

Protein Analysis

138

Amino Acids

16.37

Weight (kDa)

4.99

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 1 cut(s) 298
AhlI ACTAGT 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 170, 409
AsuHPI GGTGA 3 cut(s) 167, 253, 380
BbsI GAAGAC 1 cut(s) 232
BccI CCATC 4 cut(s) 184, 203, 209, 285
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 170, 409
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 2 cut(s) 180, 415
BpiI GAAGAC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 151
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 402
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 263
BseCI ATCGAT 1 cut(s) 267
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 326
BshVI ATCGAT 1 cut(s) 267
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 170, 409
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 3 cut(s) 286, 358, 385
BspDI ATCGAT 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 261
BssMI GATC 3 cut(s) 286, 358, 385
BssNI GRCGYC 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 168, 180
BstACI GRCGYC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 248, 406
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 289, 361, 388
BstMAI GTCTC 2 cut(s) 170, 409
BstMBI GATC 3 cut(s) 286, 358, 385
BstV2I GAAGAC 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 267
BtsCI GGATG 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 206, 398
CviJI RGCY 1 cut(s) 414
CviKI_1 RGCY 1 cut(s) 414
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 248, 406
DpnI GATC 3 cut(s) 288, 360, 387
DpnII GATC 3 cut(s) 286, 358, 385
Eam1104I CTCTTC 2 cut(s) 168, 180
EarI CTCTTC 2 cut(s) 168, 180
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 2 cut(s) 209, 401
FaqI GGGAC 1 cut(s) 352
FatI CATG 2 cut(s) 205, 397
FbaI TGATCA 1 cut(s) 385
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 180, 415
HgaI GACGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 2 cut(s) 209, 401
HinfI GANTC 3 cut(s) 100, 244, 351
HphI GGTGA 3 cut(s) 167, 253, 380
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 248, 406
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 2 cut(s) 209, 401
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 286, 358, 385
LpnPI CCDG 1 cut(s) 387
MaeI CTAG 2 cut(s) 180, 415
MaeII ACGT 1 cut(s) 43
MalI GATC 3 cut(s) 288, 360, 387
MboI GATC 3 cut(s) 286, 358, 385
MboII GAAGA 9 cut(s) 34, 37, 91, 95, 132, 185, 197, 237, 346
MluCI AATT 3 cut(s) 29, 160, 320
MnlI CCTC 7 cut(s) 63, 187, 232, 304, 307, 380, 403
NdeII GATC 3 cut(s) 286, 358, 385
NlaIII CATG 2 cut(s) 209, 401
PfeI GAWTC 3 cut(s) 100, 244, 351
Ppu21I YACGTR 1 cut(s) 44
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
Sau3AI GATC 3 cut(s) 286, 358, 385
SetI ASST 3 cut(s) 46, 157, 243
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 3 cut(s) 29, 160, 320
SspMI CTAG 2 cut(s) 180, 415
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 267, 357
TasI AATT 3 cut(s) 29, 160, 320
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 3 cut(s) 100, 244, 351
TspDTI ATGAA 4 cut(s) 81, 95, 165, 216
XspI CTAG 2 cut(s) 180, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.