Rw1G014480
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000469
Physical Location & Seq
Forward (+)
32261552 .. 32262925
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014480.1

Sequence Viewer

Length: 1086 bp
ATGGACATGTTAGAAGATGAGGAAGAGGCTTCTCAACAACTTGTCCAAGCTACCTGTGTATTTGCTCGTATAATTGAAGCATACTATATGAAATACATCCATAAAACTCCTTTTCTGAATTCTTCCTACACAGGAAATATATGGATTATGGAATTAATGAGTGCTTTTGAGATATTAGGAATGTTCTTACACATTTTAGGACATGGGGTAGTAAATAGATTAGCACAAGAACGATTTCAACACTCTGGTGAGACTGTGAGTAGATATTTCACTTATGTTTTGGATATGGTGTGTAACTTGGCTATAGAAGTCATACAACCAGAGGATCGTGAGTTCAAGAACACTGCACCACAGATATTGAGGGATTCTAGATATATGCCTCATTTTAAGGATTGTATCGGTGCCATAGACGGTGTACATGTTCGTGCTTCAATTCGTCCTGCAGATCAAATACCCTATATTGGAAGAAAAGGGATGCCGACTCAAAACATAATGGCTGCATGTAACTTTGATATGCAATTCATATTTGCATGTGCAGGTTGGGAAGGTACTGCACATGATACAAGGATTTTCTTATCTGCCATACGGAATCCTAAGTGGAATTTTCCCAAGCCTCCTAGTGGAAAATATTATTTAGTTGATGCAGGATACCCCCAAATGAAAGGGTACCTGGGACCATATAAAAATAACACATATCATCTTCCAGATTTTCGTAGGGGTGGTGGCCCGACAGGCCCTAAGGAGGTATTCAACTACGTGCACTCTTCTCTCAGAAGCGTCATTGAACGCACTTTTGGAGTCTGGAAGAAAAAGTGGAAGATTTTAAGGGACATGCCTAACTATCCGTTTGACAAGCAAGTGAAGATAATCATTGCAACCATGGCACTTCATAACTACATAAGGAGACATGCTGAAAACGATAAACATTTTGATAAACATGGGAGCGAGAATAGCACTGAAGCTTATAAGACCACTGATATAGAGGATGATACACAAGGAGATCATCGTAGTCGTCATGATGTCGGTGCACAAGAAATGGAAGTATTAAGAAATAATATAGCCACAAGTTTAATGAATGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

361

Amino Acids

41.67

Weight (kDa)

7.26

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 53 - 98 7.7e-15 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 129 - 296 5.5e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 136 - 298 5.6e-21 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
Acc36I ACCTGC 1 cut(s) 527
Acc65I GGTACC 1 cut(s) 666
AccB1I GGYRCC 2 cut(s) 401, 666
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 2 cut(s) 118, 601
AcuI CTGAAG 1 cut(s) 978
AfaI GTAC 3 cut(s) 417, 550, 668
AfiI CCNNNNNNNGG 3 cut(s) 461, 620, 742
AflIII ACRYGT 2 cut(s) 6, 418
AgsI TTSAA 6 cut(s) 77, 239, 337, 432, 751, 785
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AleI CACNNNNGTG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 50, 962
AluI AGCT 2 cut(s) 50, 962
Alw21I GWGCWC 2 cut(s) 762, 1030
Alw26I GTCTC 2 cut(s) 245, 898
Alw44I GTGCAC 2 cut(s) 758, 1026
AlwI GGATC 1 cut(s) 333
AoxI GGCC 2 cut(s) 724, 733
ApaLI GTGCAC 2 cut(s) 758, 1026
ApeKI GCWGC 1 cut(s) 497
ApoI RAATTY 2 cut(s) 118, 601
AseI ATTAAT 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 234
Asp718I GGTACC 1 cut(s) 666
AspS9I GGNCC 3 cut(s) 674, 725, 734
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 674
AxyI CCTNAGG 1 cut(s) 738
BaeGI GKGCMC 2 cut(s) 762, 1030
BanI GGYRCC 2 cut(s) 401, 666
Bbv12I GWGCWC 2 cut(s) 762, 1030
BbvI GCAGC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 671
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 245, 898
BfaI CTAG 2 cut(s) 369, 618
BfmI CTRYAG 2 cut(s) 303, 441
BfuAI ACCTGC 1 cut(s) 527
BfuI GTATCC 1 cut(s) 641
BglI GCCNNNNNGGC 1 cut(s) 732
BisI GCNGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 671
Bme18I GGWCC 1 cut(s) 674
BmgT120I GGNCC 3 cut(s) 674, 725, 734
BmiI GGNNCC 3 cut(s) 403, 668, 675
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 2 cut(s) 465, 631
BsaAI YACGTR 1 cut(s) 757
BsaJI CCNNGG 2 cut(s) 670, 879
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 620, 742
Bse21I CCTNAGG 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 870, 1086
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 2 cut(s) 670, 879
BseGI GGATG 3 cut(s) 96, 480, 991
BseLI CCNNNNNNNGG 3 cut(s) 461, 620, 742
BseMI GCAATG 2 cut(s) 870, 1086
BseMII CTCAG 1 cut(s) 784
BseSI GKGCMC 2 cut(s) 762, 1030
BseXI GCAGC 1 cut(s) 484
BsgI GTGCAG 3 cut(s) 330, 537, 555
BshFI GGCC 2 cut(s) 726, 735
BshNI GGYRCC 2 cut(s) 401, 666
BsiHKAI GWGCWC 2 cut(s) 762, 1030
BslFI GGGAC 2 cut(s) 687, 842
BslI CCNNNNNNNGG 3 cut(s) 461, 620, 742
BsmAI GTCTC 2 cut(s) 245, 898
BsmFI GGGAC 2 cut(s) 687, 842
BsmI GAATGC 1 cut(s) 1081
BsnI GGCC 2 cut(s) 726, 735
Bsp1286I GDGCHC 2 cut(s) 762, 1030
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 3 cut(s) 325, 445, 1000
Bsp19I CCATGG 1 cut(s) 879
BspANI GGCC 2 cut(s) 726, 735
BspCNI CTCAG 1 cut(s) 783
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 3 cut(s) 403, 668, 675
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 2 cut(s) 401, 666
BsrDI GCAATG 2 cut(s) 870, 1086
BsrGI TGTACA 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 670, 879
BssMI GATC 3 cut(s) 325, 445, 1000
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 2 cut(s) 256, 413
Bst6I CTCTTC 2 cut(s) 18, 769
BstAUI TGTACA 1 cut(s) 415
BstBAI YACGTR 1 cut(s) 757
BstDEI CTNAG 3 cut(s) 594, 738, 770
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 3 cut(s) 96, 480, 991
BstKTI GATC 3 cut(s) 328, 448, 1003
BstMAI GTCTC 2 cut(s) 245, 898
BstMBI GATC 3 cut(s) 325, 445, 1000
BstMWI GCNNNNNNNGC 3 cut(s) 732, 881, 951
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 6 cut(s) 10, 422, 504, 534, 835, 911
BstSCI CCNGG 1 cut(s) 669
BstSFI CTRYAG 2 cut(s) 303, 441
BstSLI GKGCMC 2 cut(s) 762, 1030
BstV1I GCAGC 1 cut(s) 484
Bsu36I CCTNAGG 1 cut(s) 738
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 2 cut(s) 726, 735
BtgI CCRYGG 1 cut(s) 879
BtsCI GGATG 3 cut(s) 96, 480, 991
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 342, 954, 972
BveI ACCTGC 1 cut(s) 527
CciI TCATGA 1 cut(s) 1015
Cfr13I GGNCC 3 cut(s) 674, 725, 734
CseI GACGC 1 cut(s) 766
Csp6I GTAC 3 cut(s) 416, 549, 667
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviJI RGCY 9 cut(s) 29, 50, 302, 497, 613, 726, 735, 962, 1061
CviKI_1 RGCY 9 cut(s) 29, 50, 302, 497, 613, 726, 735, 962, 1061
CviQI GTAC 3 cut(s) 416, 549, 667
DdeI CTNAG 3 cut(s) 594, 738, 770
DpnI GATC 3 cut(s) 327, 447, 1002
DpnII GATC 3 cut(s) 325, 445, 1000
Eam1104I CTCTTC 2 cut(s) 18, 769
EarI CTCTTC 2 cut(s) 18, 769
Eco130I CCWWGG 1 cut(s) 879
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 978
Eco81I CCTNAGG 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 879
ErhI CCWWGG 1 cut(s) 879
FaqI GGGAC 2 cut(s) 687, 842
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 3 cut(s) 83, 487, 998
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 2 cut(s) 369, 618
GluI GCNGC 1 cut(s) 498
HaeIII GGCC 2 cut(s) 726, 735
HgaI GACGC 1 cut(s) 766
HindIII AAGCTT 1 cut(s) 960
HinfI GANTC 4 cut(s) 365, 481, 589, 798
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 3 cut(s) 416, 760, 1028
Hpy188I TCNGA 2 cut(s) 117, 773
Hpy188III TCNNGA 6 cut(s) 329, 337, 369, 704, 802, 1016
Hpy8I GTNNAC 3 cut(s) 416, 760, 1028
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 2 cut(s) 256, 413
HpyCH4IV ACGT 1 cut(s) 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 732, 881, 951
HpyF3I CTNAG 3 cut(s) 594, 738, 770
HpySE526I ACGT 1 cut(s) 756
KpnI GGTACC 1 cut(s) 670
Kzo9I GATC 3 cut(s) 325, 445, 1000
LmnI GCTCC 1 cut(s) 942
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 2 cut(s) 465, 631
MaeI CTAG 2 cut(s) 369, 618
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 2 cut(s) 293, 503
MalI GATC 3 cut(s) 327, 447, 1002
MboI GATC 3 cut(s) 325, 445, 1000
MboII GAAGA 9 cut(s) 26, 35, 114, 477, 692, 756, 817, 829, 874
MhlI GDGCHC 2 cut(s) 762, 1030
MluCI AATT 6 cut(s) 72, 118, 152, 432, 518, 601
MlyI GAGTC 2 cut(s) 475, 807
MnlI CCTC 8 cut(s) 13, 19, 316, 354, 390, 624, 736, 976
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 5 cut(s) 155, 387, 824, 1046, 1070
MslI CAYNNNNRTG 2 cut(s) 246, 423
MspR9I CCNGG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 1081
MvaI CCWGG 1 cut(s) 671
MwoI GCNNNNNNNGC 3 cut(s) 732, 881, 951
NcoI CCATGG 1 cut(s) 879
NdeII GATC 3 cut(s) 325, 445, 1000
NlaIV GGNNCC 3 cut(s) 403, 668, 675
NspI RCATGY 6 cut(s) 10, 422, 504, 534, 835, 911
OliI CACNNNNGTG 1 cut(s) 246
PagI TCATGA 1 cut(s) 1015
PciI ACATGT 2 cut(s) 6, 418
PctI GAATGC 1 cut(s) 1081
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 365, 589
PkrI GCNGC 1 cut(s) 499
PleI GAGTC 2 cut(s) 475, 806
PpsI GAGTC 2 cut(s) 475, 806
Ppu21I YACGTR 1 cut(s) 757
PscI ACATGT 2 cut(s) 6, 418
PshBI ATTAAT 1 cut(s) 155
PsiI TTATAA 1 cut(s) 966
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 3 cut(s) 403, 668, 675
PspPI GGNCC 3 cut(s) 674, 725, 734
PstI CTGCAG 1 cut(s) 445
RsaI GTAC 3 cut(s) 417, 550, 668
RsaNI GTAC 3 cut(s) 416, 549, 667
RseI CAYNNNNRTG 2 cut(s) 246, 423
SaqAI TTAA 5 cut(s) 155, 387, 824, 1046, 1070
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 3 cut(s) 325, 445, 1000
Sau96I GGNCC 3 cut(s) 674, 725, 734
SchI GAGTC 2 cut(s) 475, 807
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 2 cut(s) 762, 1030
SetI ASST 8 cut(s) 52, 56, 541, 550, 672, 747, 759, 964
SfaNI GCATC 2 cut(s) 465, 631
SfcI CTRYAG 2 cut(s) 303, 441
SfiI GGCCNNNNNGGCC 1 cut(s) 732
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 246, 423
Sse9I AATT 6 cut(s) 72, 118, 152, 432, 518, 601
SspI AATATT 1 cut(s) 629
SspMI CTAG 2 cut(s) 369, 618
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 2 cut(s) 256, 413
TaiI ACGT 1 cut(s) 759
TasI AATT 6 cut(s) 72, 118, 152, 432, 518, 601
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 2 cut(s) 365, 589
Tru1I TTAA 5 cut(s) 155, 387, 824, 1046, 1070
Tru9I TTAA 5 cut(s) 155, 387, 824, 1046, 1070
TscAI CASTG 3 cut(s) 349, 961, 979
TseI GCWGC 1 cut(s) 497
TspDTI ATGAA 4 cut(s) 104, 511, 674, 878
TspGWI ACGGA 2 cut(s) 601, 834
TspRI CASTG 3 cut(s) 349, 961, 979
VneI GTGCAC 2 cut(s) 758, 1026
VpaK11BI GGWCC 1 cut(s) 674
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 2 cut(s) 118, 601
XbaI TCTAGA 1 cut(s) 368
XceI RCATGY 6 cut(s) 10, 422, 504, 534, 835, 911
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 369, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.