FvH4_2g04530
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000469
Physical Location & Seq
Reverse (-)
3493220 .. 3496132
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04530.t2

Sequence Viewer

Length: 1104 bp
ATGGGAAGGAAAAAGATCACTAATGACAACACTACTGAGATGACCAACCTTGAAAATGGGCAAGGTGGATCCAAAACTGCTACCTGGAATCCTCAAAGTGTAGCAATTTTTTGTGACTTGTGTATCAAAGAGGTGGGAAAAGGACAACGCCCCGGCACTCACTTTAGCAAAGAAGGATGGTCAAGTTTGGTTGCAAACTTTCATGCGGAGACTGGAAACAATTATGACAAATCACAATTGAAGAACAAGTGGGATTTGCTGAAAAAAGAATGGAAGATATGGAAAGATCTAATTGGGAAGGACACTGGCCTAGGTTGGAATCCTACTAAGAACACTGTTGATGCATCTGAGGAATGGTGGAAAAATAAAATACAGAATACTCCAGCAGAAATATTGGGAGATTCTAGATACATGCCTCATTTCAAGGATTGTATTGGAGCTATAGATGGCATACATGTTCAAGCCAAAATATCACCTTCTGAGCAAGTACCATATATTGGTCGAAAAGGGATACCTACTCAGAATATAATGGCTGTATGCAACTTTGACATGCAATTCACTTTTGCATGTGTGGGATGGGAAGGCACTGCTCACGATACAAGGGTATTTCAATCAGCAGTTCAAAATCCAACCTCGAATTTTCCTAAACCTCCAAATGGGAAATACTATGTGGTGGATGCAGGATACCCACAAATCAAAGGGTATTTAGGACCGTATAAATGTCAAAGGTATCATCTTCCAGATTTTCGCAGAGGTGCCCAACCAACAGGTTATAAAGAGGTTTTCAATCATGCACATTCCTCCCTCAGAAGTGTTATTGAACGAACTTTTGGAGTATGGAAAAAAAGATGGAATATTCTACGGGACATGCCTACTTATCCATTTGACAAACAAGTGAAAATTGTTATAGCAACAATGACACTACACAACTACATAAGAAGGTATTCCCAACGTGACTGTGTTTTTGATGAAAGTGAAAATCTGTATGATATTGAACAGATGGGAAGGCAGCCTGAAGCAGAAGATCGCAATGGTCATGTTTCAAGAGAAATGGAGGCCTTGAGAAATAGTATCGCTGCAAGTTTAATGGGGACACCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

368

Amino Acids

41.92

Weight (kDa)

8.97

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 28 - 122 3.4e-26 Myb/SANT-like DNA-binding domain
Plant_tran PF04827 133 - 312 6.2e-07 Plant transposon protein
DDE_Tnp_1 PF01609 141 - 306 7.4e-11 Transposase DDE domain
DDE_Tnp_4 PF13359 148 - 310 9.3e-24 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AccB1I GGYRCC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 63, 76
AcsI RAATTY 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 1035
AfaI GTAC 1 cut(s) 489
AfiI CCNNNNNNNGG 2 cut(s) 497, 656
AflIII ACRYGT 1 cut(s) 454
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 813, 845
AluBI AGCT 1 cut(s) 440
AluI AGCT 1 cut(s) 440
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 63, 76
AoxI GGCC 2 cut(s) 307, 1056
ApeKI GCWGC 2 cut(s) 1009, 1076
ApoI RAATTY 1 cut(s) 637
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
Asp700I GAANNNNTTC 1 cut(s) 943
AspA2I CCTAGG 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 710
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 710
AvrII CCTAGG 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 760
BaeI ACNNNNGTAYC 4 cut(s) 106, 139, 588, 621
BamHI GGATCC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 755
BbvI GCAGC 2 cut(s) 1021, 1063
BccI CCATC 5 cut(s) 171, 440, 570, 843, 994
BciT130I CCWGG 1 cut(s) 85
BciVI GTATCC 2 cut(s) 504, 677
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 311, 405
BfmI CTRYAG 1 cut(s) 441
BfuI GTATCC 2 cut(s) 504, 677
BglII AGATCT 1 cut(s) 286
BisI GCNGC 2 cut(s) 1010, 1077
BlnI CCTAGG 1 cut(s) 310
BlsI GCNGC 2 cut(s) 1011, 1078
Bme1390I CCNGG 2 cut(s) 85, 153
Bme18I GGWCC 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 2 cut(s) 70, 757
BmrFI CCNGG 2 cut(s) 85, 153
BmsI GCATC 3 cut(s) 331, 353, 667
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 1081
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 151, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 656
Bse1I ACTGG 2 cut(s) 217, 310
Bse3DI GCAATG 1 cut(s) 1036
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 151, 310
BseGI GGATG 3 cut(s) 182, 581, 682
BseLI CCNNNNNNNGG 2 cut(s) 497, 656
BseMI GCAATG 1 cut(s) 1036
BseMII CTCAG 5 cut(s) 27, 339, 471, 533, 820
BseNI ACTGG 2 cut(s) 217, 310
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 2 cut(s) 1021, 1063
BshFI GGCC 2 cut(s) 309, 1058
BshNI GGYRCC 1 cut(s) 755
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 2 cut(s) 497, 656
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 2 cut(s) 309, 1058
Bsp1286I GDGCHC 1 cut(s) 760
Bsp143I GATC 4 cut(s) 15, 68, 286, 1024
BspACI CCGC 1 cut(s) 206
BspANI GGCC 2 cut(s) 309, 1058
BspCNI CTCAG 5 cut(s) 28, 340, 472, 532, 819
BspLI GGNNCC 2 cut(s) 70, 757
BspPI GGATC 2 cut(s) 63, 76
BspT107I GGYRCC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 1036
BsrI ACTGG 2 cut(s) 217, 310
BssECI CCNNGG 2 cut(s) 151, 310
BssMI GATC 4 cut(s) 15, 68, 286, 1024
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 3 cut(s) 337, 714, 959
BstDEI CTNAG 6 cut(s) 36, 327, 348, 480, 519, 806
BstF5I GGATG 3 cut(s) 182, 581, 682
BstKTI GATC 4 cut(s) 18, 71, 289, 1027
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 4 cut(s) 15, 68, 286, 1024
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 5 cut(s) 415, 458, 553, 570, 871
BstSCI CCNGG 2 cut(s) 83, 151
BstSFI CTRYAG 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 760
BstV1I GCAGC 2 cut(s) 1021, 1063
BstX2I RGATCY 2 cut(s) 68, 286
BstYI RGATCY 2 cut(s) 68, 286
BsuI GTATCC 2 cut(s) 504, 677
BsuRI GGCC 2 cut(s) 309, 1058
BtsCI GGATG 3 cut(s) 182, 581, 682
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 303, 333, 585
Cfr13I GGNCC 1 cut(s) 710
Csp6I GTAC 1 cut(s) 488
CviAII CATG 8 cut(s) 203, 412, 455, 550, 567, 791, 868, 1037
CviJI RGCY 6 cut(s) 309, 440, 464, 533, 1012, 1058
CviKI_1 RGCY 6 cut(s) 309, 440, 464, 533, 1012, 1058
CviQI GTAC 1 cut(s) 488
DdeI CTNAG 6 cut(s) 36, 327, 348, 480, 519, 806
DpnI GATC 4 cut(s) 17, 70, 288, 1026
DpnII GATC 4 cut(s) 15, 68, 286, 1024
Eco130I CCWWGG 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 1058
Eco47I GGWCC 1 cut(s) 710
Eco57I CTGAAG 1 cut(s) 1035
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 8 cut(s) 206, 415, 458, 553, 570, 794, 871, 1040
FaqI GGGAC 1 cut(s) 878
FatI CATG 8 cut(s) 202, 411, 454, 549, 566, 790, 867, 1036
Fnu4HI GCNGC 2 cut(s) 1010, 1077
FokI GGATG 3 cut(s) 189, 588, 689
Fsp4HI GCNGC 2 cut(s) 1010, 1077
FspBI CTAG 2 cut(s) 311, 405
GluI GCNGC 2 cut(s) 1010, 1077
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 2 cut(s) 309, 1058
HapII CCGG 1 cut(s) 153
Hin1II CATG 8 cut(s) 206, 415, 458, 553, 570, 794, 871, 1040
HinfI GANTC 3 cut(s) 88, 319, 401
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 465
Hpy188I TCNGA 4 cut(s) 349, 481, 522, 809
Hpy188III TCNNGA 4 cut(s) 405, 593, 740, 1044
HpyAV CCTTC 6 cut(s) 167, 292, 486, 575, 933, 999
HpyCH4III ACNGT 3 cut(s) 337, 714, 959
HpyCH4IV ACGT 1 cut(s) 952
HpyCH4V TGCA 8 cut(s) 194, 344, 540, 553, 566, 680, 794, 1079
HpyF3I CTNAG 6 cut(s) 36, 327, 348, 480, 519, 806
HpySE526I ACGT 1 cut(s) 952
Hsp92II CATG 8 cut(s) 206, 415, 458, 553, 570, 794, 871, 1040
Kzo9I GATC 4 cut(s) 15, 68, 286, 1024
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 2 cut(s) 1021, 1063
LweI GCATC 3 cut(s) 331, 353, 667
MaeI CTAG 2 cut(s) 311, 405
MaeII ACGT 1 cut(s) 952
MaeIII GTNAC 2 cut(s) 113, 953
MalI GATC 4 cut(s) 17, 70, 288, 1026
MboI GATC 4 cut(s) 15, 68, 286, 1024
MboII GAAGA 4 cut(s) 253, 286, 728, 1034
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 2 cut(s) 68, 286
MhlI GDGCHC 1 cut(s) 760
MluCI AATT 7 cut(s) 105, 220, 236, 291, 554, 637, 900
MmeI TCCRAC 2 cut(s) 296, 653
Mph1103I ATGCAT 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 943
MseI TTAA 1 cut(s) 1085
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 85, 153
MunI CAATTG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 85
NciI CCSGG 1 cut(s) 153
NdeII GATC 4 cut(s) 15, 68, 286, 1024
NlaIII CATG 8 cut(s) 206, 415, 458, 553, 570, 794, 871, 1040
NlaIV GGNNCC 2 cut(s) 70, 757
NmuCI GTSAC 2 cut(s) 113, 953
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 5 cut(s) 415, 458, 553, 570, 871
PceI AGGCCT 1 cut(s) 1058
PciI ACATGT 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 943
PfeI GAWTC 3 cut(s) 88, 319, 401
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 2 cut(s) 1011, 1078
PscI ACATGT 1 cut(s) 454
PsiI TTATAA 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 70, 757
PspPI GGNCC 1 cut(s) 710
PsuI RGATCY 2 cut(s) 68, 286
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 1085
SatI GCNGC 2 cut(s) 1010, 1077
Sau3AI GATC 4 cut(s) 15, 68, 286, 1024
Sau96I GGNCC 1 cut(s) 710
ScrFI CCNGG 2 cut(s) 85, 153
SduI GDGCHC 1 cut(s) 760
SfaNI GCATC 3 cut(s) 331, 353, 667
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 1060
SmoI CTYRAG 1 cut(s) 1060
Sse9I AATT 7 cut(s) 105, 220, 236, 291, 554, 637, 900
SseBI AGGCCT 1 cut(s) 1058
SsiI CCGC 1 cut(s) 206
SspI AATATT 2 cut(s) 393, 856
SspMI CTAG 2 cut(s) 311, 405
StuI AGGCCT 1 cut(s) 1058
StyD4I CCNGG 2 cut(s) 83, 151
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 337, 714, 959
TaiI ACGT 1 cut(s) 955
TaqI TCGA 2 cut(s) 502, 635
TasI AATT 7 cut(s) 105, 220, 236, 291, 554, 637, 900
TfiI GAWTC 3 cut(s) 88, 319, 401
Tru1I TTAA 1 cut(s) 1085
Tru9I TTAA 1 cut(s) 1085
TscAI CASTG 3 cut(s) 310, 340, 592
TseFI GTSAC 2 cut(s) 113, 953
TseI GCWGC 2 cut(s) 1009, 1076
Tsp45I GTSAC 2 cut(s) 113, 953
TspDTI ATGAA 2 cut(s) 191, 984
TspRI CASTG 3 cut(s) 310, 340, 592
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 710
XapI RAATTY 1 cut(s) 637
XbaI TCTAGA 1 cut(s) 404
XceI RCATGY 5 cut(s) 415, 458, 553, 570, 871
XmaJI CCTAGG 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 943
XspI CTAG 2 cut(s) 311, 405
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.