Rw1G033480
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000469
Physical Location & Seq
Reverse (-)
61539770 .. 61547432
7663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033480.1

Sequence Viewer

Length: 1041 bp
ATGGATGTTTCTGGAGATGAGGAGGAGATAGATCAAATTATATGTCTATGTGCTCGTCTTATTCAAGTCTATCTCGAAAAGTACATTCACAAAACTCCATGTATGACAAGCTCCCAAAACAGAAACATGAGTATTGTTGAAATGTTGGCTATGTTTCTCTATATTTTGGGACAAGGTCAGACAAATAGGAGTACACAAGAACGTTTTCAACGTTCTGGTGAGACGGTTAGTAGGTATTTTGATATAATGTTAGAGATTTTCTATAATATGGCAAAAGTGCTCATAAAGCCATTGGATCCGGAATTTAGGAGCATCCCACAAGAAATTCTAACTGATTCAAGATACATGCCTCATTTTAAGGATTGCATTGGCGCTATCGATGGTGTTCATGTCCAAGCTTCGATATCTCCATGTGATCAAGTGCCATACATTGGAAGAAAAGGGATACCCACCCAAAATGTATTGGCTATTTGCAACTTCAACATGCAATTCACATTTGTATGTGCAGGGTGGGAAGGCAGCGCCCATGATAGTAGAGTATTCTTATCAGCTCTACGCAAACCTCGATCGAATTTTCCTAAACCCCCCAATGGAAAATACTATGTGGTGGATGCAGGATATCCACAAATGAAGGGTTTTTTAGGACCATATAAAGGTGAGCGGTACCACCTTCCACATTTTCGTAGAGGTGATGAACCGACCGGTCATAAAGAAATATTCAATCATGCACATTCTTCACTGAGGGGTGTTATTGAGCGCACATTTGGGGTATGGAAAAAGAAATGGAGTATTTTACGTGATATGCCACATTTTCCTTATGAAAAACAAGTGAAGATAGTTATTGCTACTATGGCTCTTCATAATTACATAAGAAGATATGCTGAACGAGATATTGATTTTGATGAAAGTGGAAATTACTCAAGTGAAGAGATTGGTGAAGAGATGGAGGATAATGAACATGATGGAGATGGTCCAGGAAGACAAGAAATGGAGGTGTTAAGAAATGCAATTGCACAAAGTCTAATGAATGCATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

346

Amino Acids

39.84

Weight (kDa)

6.19

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 38 - 87 2.1e-16 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 120 - 285 6.1e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 126 - 288 8.6e-23 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 661
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 661
AclI AACGTT 2 cut(s) 202, 211
AclWI GGATC 2 cut(s) 290, 303
AcsI RAATTY 3 cut(s) 302, 324, 571
AfaI GTAC 3 cut(s) 83, 193, 665
AfiI CCNNNNNNNGG 3 cut(s) 431, 590, 653
AgeI ACCGGT 1 cut(s) 701
AgsI TTSAA 6 cut(s) 65, 140, 209, 339, 481, 721
AjnI CCWGG 1 cut(s) 973
AluBI AGCT 3 cut(s) 111, 398, 551
AluI AGCT 3 cut(s) 111, 398, 551
Alw21I GWGCWC 2 cut(s) 55, 282
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 290, 303
Aor13HI TCCGGA 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 3 cut(s) 302, 324, 571
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AsiGI ACCGGT 1 cut(s) 701
Asp700I GAANNNNTTC 1 cut(s) 204
Asp718I GGTACC 1 cut(s) 663
AspLEI GCGC 3 cut(s) 374, 524, 759
AspS9I GGNCC 2 cut(s) 644, 971
AsuHPI GGTGA 4 cut(s) 230, 668, 701, 947
AvaII GGWCC 2 cut(s) 644, 971
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 985
Bbv12I GWGCWC 2 cut(s) 55, 282
BbvI GCAGC 1 cut(s) 531
BccI CCATC 4 cut(s) 374, 937, 956, 962
BciT130I CCWGG 1 cut(s) 975
BciVI GTATCC 1 cut(s) 438
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 215
BfoI RGCGCY 2 cut(s) 375, 525
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 1 cut(s) 520
BlsI GCNGC 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 975
Bme18I GGWCC 2 cut(s) 644, 971
BmgT120I GGNCC 2 cut(s) 644, 971
BmiI GGNNCC 2 cut(s) 297, 665
BmrFI CCNGG 1 cut(s) 975
BmsI GCATC 2 cut(s) 321, 601
BpiI GAAGAC 1 cut(s) 985
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 904
Bsa29I ATCGAT 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 797
BsaWI WCCGGW 2 cut(s) 298, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 590, 653
Bse118I RCCGGY 1 cut(s) 701
BseAI TCCGGA 1 cut(s) 298
BseBI CCWGG 1 cut(s) 975
BseCI ATCGAT 1 cut(s) 378
BseGI GGATG 3 cut(s) 10, 312, 616
BseLI CCNNNNNNNGG 3 cut(s) 431, 590, 653
BseMII CTCAG 1 cut(s) 731
BseRI GAGGAG 2 cut(s) 35, 38
BseXI GCAGC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 525
Bsh1285I CGRYCG 2 cut(s) 569, 702
BshNI GGYRCC 1 cut(s) 663
BshTI ACCGGT 1 cut(s) 701
BshVI ATCGAT 1 cut(s) 378
BsiEI CGRYCG 2 cut(s) 569, 702
BsiHKAI GWGCWC 2 cut(s) 55, 282
BsiSI CCGG 2 cut(s) 299, 702
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 431, 590, 653
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 1033
Bsp1286I GDGCHC 2 cut(s) 55, 282
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 4 cut(s) 31, 295, 415, 566
BspACI CCGC 1 cut(s) 661
BspCNI CTCAG 1 cut(s) 732
BspDI ATCGAT 1 cut(s) 378
BspEI TCCGGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 297, 665
BspPI GGATC 2 cut(s) 290, 303
BspQI GCTCTTC 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 663
BsrBI CCGCTC 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 701
BssAI RCCGGY 1 cut(s) 701
BssMI GATC 4 cut(s) 31, 295, 415, 566
Bst2UI CCWGG 1 cut(s) 975
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 3 cut(s) 861, 921, 933
BstBAI YACGTR 1 cut(s) 797
BstDEI CTNAG 2 cut(s) 740, 1038
BstF5I GGATG 3 cut(s) 10, 312, 616
BstH2I RGCGCY 2 cut(s) 375, 525
BstHHI GCGC 3 cut(s) 374, 524, 759
BstKTI GATC 4 cut(s) 34, 298, 418, 569
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 31, 295, 415, 566
BstMCI CGRYCG 2 cut(s) 569, 702
BstMWI GCNNNNNNNGC 2 cut(s) 286, 851
BstNI CCWGG 1 cut(s) 975
BstNSI RCATGY 2 cut(s) 349, 487
BstSCI CCNGG 1 cut(s) 973
BstV1I GCAGC 1 cut(s) 531
BstV2I GAAGAC 1 cut(s) 985
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 378
BsuI GTATCC 1 cut(s) 438
BsuTUI ATCGAT 1 cut(s) 378
BtsCI GGATG 3 cut(s) 10, 312, 616
BtsIMutI CAGTG 1 cut(s) 737
CfoI GCGC 3 cut(s) 374, 524, 759
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 2 cut(s) 644, 971
ClaI ATCGAT 1 cut(s) 378
Csp6I GTAC 3 cut(s) 82, 192, 664
CspAI ACCGGT 1 cut(s) 701
CviAII CATG 9 cut(s) 99, 127, 346, 389, 411, 484, 527, 725, 959
CviJI RGCY 7 cut(s) 111, 149, 289, 398, 467, 551, 854
CviKI_1 RGCY 7 cut(s) 111, 149, 289, 398, 467, 551, 854
CviQI GTAC 3 cut(s) 82, 192, 664
DdeI CTNAG 2 cut(s) 740, 1038
DpnI GATC 4 cut(s) 33, 297, 417, 568
DpnII GATC 4 cut(s) 31, 295, 415, 566
Eam1104I CTCTTC 3 cut(s) 861, 921, 933
EarI CTCTTC 3 cut(s) 861, 921, 933
Eco32I GATATC 2 cut(s) 405, 620
Eco47I GGWCC 2 cut(s) 644, 971
EcoRII CCWGG 1 cut(s) 973
EcoRV GATATC 2 cut(s) 405, 620
EcoT22I ATGCAT 1 cut(s) 1033
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 9 cut(s) 102, 130, 349, 392, 414, 487, 530, 728, 962
FaqI GGGAC 1 cut(s) 183
FatI CATG 9 cut(s) 98, 126, 345, 388, 410, 483, 526, 724, 958
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 520
FokI GGATG 3 cut(s) 17, 299, 623
Fsp4HI GCNGC 1 cut(s) 520
GlaI GCGC 3 cut(s) 373, 523, 758
GluI GCNGC 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 2 cut(s) 375, 525
HapII CCGG 2 cut(s) 299, 702
HhaI GCGC 3 cut(s) 374, 524, 759
Hin1II CATG 9 cut(s) 102, 130, 349, 392, 414, 487, 530, 728, 962
Hin6I GCGC 3 cut(s) 372, 522, 757
HinP1I GCGC 3 cut(s) 372, 522, 757
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 1 cut(s) 335
HpaII CCGG 2 cut(s) 299, 702
HphI GGTGA 4 cut(s) 230, 668, 701, 947
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 4 cut(s) 12, 74, 299, 339
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 509, 625, 680
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 3 cut(s) 202, 211, 796
HpyCH4V TGCA 9 cut(s) 366, 474, 487, 506, 614, 728, 1007, 1013, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 851
HpyF3I CTNAG 2 cut(s) 740, 1038
HpySE526I ACGT 3 cut(s) 202, 211, 796
Hsp92II CATG 9 cut(s) 102, 130, 349, 392, 414, 487, 530, 728, 962
HspAI GCGC 3 cut(s) 372, 522, 757
Kpn2I TCCGGA 1 cut(s) 298
KpnI GGTACC 1 cut(s) 667
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 31, 295, 415, 566
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 2 cut(s) 116, 309
LpnPI CCDG 7 cut(s) 201, 312, 492, 600, 715, 960, 987
Lsp1109I GCAGC 1 cut(s) 531
LweI GCATC 2 cut(s) 321, 601
MaeII ACGT 3 cut(s) 202, 211, 796
MalI GATC 4 cut(s) 33, 297, 417, 568
MbiI CCGCTC 1 cut(s) 661
MboI GATC 4 cut(s) 31, 295, 415, 566
MboII GAAGA 8 cut(s) 447, 726, 844, 848, 885, 938, 950, 990
MfeI CAATTG 1 cut(s) 1008
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 2 cut(s) 55, 282
MluCI AATT 8 cut(s) 36, 302, 324, 488, 571, 862, 913, 1008
MnlI CCTC 8 cut(s) 13, 16, 360, 573, 680, 735, 940, 985
Mph1103I ATGCAT 1 cut(s) 1033
MroI TCCGGA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 2 cut(s) 357, 998
MslI CAYNNNNRTG 1 cut(s) 499
MspI CCGG 2 cut(s) 299, 702
MspR9I CCNGG 1 cut(s) 975
MunI CAATTG 1 cut(s) 1008
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 1 cut(s) 975
MwoI GCNNNNNNNGC 2 cut(s) 286, 851
NdeII GATC 4 cut(s) 31, 295, 415, 566
NlaIII CATG 9 cut(s) 102, 130, 349, 392, 414, 487, 530, 728, 962
NlaIV GGNNCC 2 cut(s) 297, 665
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 2 cut(s) 349, 487
PciSI GCTCTTC 1 cut(s) 861
PcsI WCGNNNNNNNCGW 2 cut(s) 208, 562
PctI GAATGC 1 cut(s) 1033
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 973
PinAI ACCGGT 1 cut(s) 701
PkrI GCNGC 1 cut(s) 521
Ple19I CGATCG 1 cut(s) 569
Ppu21I YACGTR 1 cut(s) 797
Psp1406I AACGTT 2 cut(s) 202, 211
Psp6I CCWGG 1 cut(s) 973
PspGI CCWGG 1 cut(s) 973
PspN4I GGNNCC 2 cut(s) 297, 665
PspPI GGNCC 2 cut(s) 644, 971
PsuI RGATCY 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 174
PvuI CGATCG 1 cut(s) 569
RsaI GTAC 3 cut(s) 83, 193, 665
RsaNI GTAC 3 cut(s) 82, 192, 664
RseI CAYNNNNRTG 1 cut(s) 499
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 357, 998
SatI GCNGC 1 cut(s) 520
Sau3AI GATC 4 cut(s) 31, 295, 415, 566
Sau96I GGNCC 2 cut(s) 644, 971
ScrFI CCNGG 1 cut(s) 975
SduI GDGCHC 2 cut(s) 55, 282
SfaNI GCATC 2 cut(s) 321, 601
SinI GGWCC 2 cut(s) 644, 971
SmiMI CAYNNNNRTG 1 cut(s) 499
SmlI CTYRAG 1 cut(s) 919
SmoI CTYRAG 1 cut(s) 919
Sse9I AATT 8 cut(s) 36, 302, 324, 488, 571, 862, 913, 1008
SsiI CCGC 1 cut(s) 661
SspI AATATT 1 cut(s) 717
StyD4I CCNGG 1 cut(s) 973
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 3 cut(s) 205, 214, 799
TaqI TCGA 5 cut(s) 75, 378, 401, 565, 569
TasI AATT 8 cut(s) 36, 302, 324, 488, 571, 862, 913, 1008
TatI WGTACW 2 cut(s) 81, 191
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 357, 998
Tru9I TTAA 2 cut(s) 357, 998
TscAI CASTG 1 cut(s) 744
TseI GCWGC 1 cut(s) 519
TspDTI ATGAA 8 cut(s) 377, 644, 708, 834, 848, 918, 969, 1040
TspRI CASTG 1 cut(s) 744
Tth111I GACNNNGTC 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 644, 971
XapI RAATTY 3 cut(s) 302, 324, 571
XceI RCATGY 2 cut(s) 349, 487
XmnI GAANNNNTTC 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.