Prupe.6G167200_v2.0.a1
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000469
Physical Location & Seq
Forward (+)
17016589 .. 17019029
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G167200.1

Sequence Viewer

Length: 666 bp
ATGTCTACAAGGAATGAAGACAATCACTCTGATAGTGATTCAGATCTTGAAGAAATGGAGCAACATATGATAATTTGTATGCATATTTATGAATATTGGCAATCATATGTAGACAGAACTCCATTGTCTTATAGTATCCGCATGCAAGTGGCTGCTAAGCGTTTCCAACGATCTAAAGACACCATTCATAGACAATTTAAGCGTATTTTGGGAGCTTTATGTGCGTTAGCACCATGCATTATAAGACCACAAAGTCGAGGGGAAACACCTTCTCAAATTTTGAATAACCCAAAGTATTATCCTTATTTTGAGAAGTGTATTGGTGCAATTGATGGAACTCATGTTGCTGCTTGGGCACTAGCTCAAAAGCAAACCTCATATCGTGGTAGGAAGATCCTTATTACTCAAAATGTCATGTGCGCTTGCTCTTTTGACATGATGTTCACTTTTATTTATATGGGTTGGGAAGGGACTGCAAATGACTCTAGGGTGTTCATAGATGCAGTGATGAGGCCAGAAAATGAGTTTCCTTTTCCAGATGAAGGACCCAACCCAAATTCCACTTTGGAATCTGAGCCGAACCCTGTCTCAGAGATAACACTTCAATCTGAGCCGCAATCCTCGCAAGTCTCAGAGATAACACTTCAATCTGAGCCGCAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

222

Amino Acids

25.37

Weight (kDa)

5.15

Isoelectric Point (pI)

69.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AasI GACNNNNNNGTC 1 cut(s) 252
AccI GTMKAC 2 cut(s) 5, 111
AciI CCGC 3 cut(s) 139, 614, 656
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 2 cut(s) 276, 556
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 50, 283, 605, 647
AluBI AGCT 2 cut(s) 215, 362
AluI AGCT 2 cut(s) 215, 362
Alw26I GTCTC 2 cut(s) 592, 634
AlwI GGATC 1 cut(s) 388
AoxI GGCC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 152, 347
ApoI RAATTY 2 cut(s) 276, 556
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 545
AvaII GGWCC 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 139, 334
BccI CCATC 1 cut(s) 326
BciVI GTATCC 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 592, 634
BfaI CTAG 3 cut(s) 359, 486, 664
BfuI GTATCC 1 cut(s) 146
BglII AGATCT 1 cut(s) 43
BisI GCNGC 4 cut(s) 153, 348, 614, 656
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 4 cut(s) 154, 349, 615, 657
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 547
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse8I GATNNNNATC 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMII CTCAG 5 cut(s) 564, 600, 603, 642, 645
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 2 cut(s) 139, 334
BshFI GGCC 1 cut(s) 514
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 2 cut(s) 592, 634
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 1 cut(s) 514
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 3 cut(s) 43, 170, 393
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 3 cut(s) 139, 614, 656
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 5 cut(s) 565, 601, 602, 643, 644
BspLI GGNNCC 1 cut(s) 547
BspPI GGATC 1 cut(s) 388
BssMI GATC 3 cut(s) 43, 170, 393
BstC8I GCNNGC 2 cut(s) 143, 424
BstDEI CTNAG 6 cut(s) 156, 573, 589, 609, 631, 651
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 3 cut(s) 46, 173, 396
BstMAI GTCTC 2 cut(s) 592, 634
BstMBI GATC 3 cut(s) 43, 170, 393
BstMWI GCNNNNNNNGC 3 cut(s) 221, 353, 622
BstNSI RCATGY 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 139, 334
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 2 cut(s) 43, 393
BstYI RGATCY 2 cut(s) 43, 393
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 2 cut(s) 143, 424
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 545
CviAII CATG 5 cut(s) 142, 234, 341, 415, 436
CviJI RGCY 7 cut(s) 152, 215, 362, 514, 577, 613, 655
CviKI_1 RGCY 7 cut(s) 152, 215, 362, 514, 577, 613, 655
DdeI CTNAG 6 cut(s) 156, 573, 589, 609, 631, 651
DpnI GATC 3 cut(s) 45, 172, 395
DpnII GATC 3 cut(s) 43, 170, 393
DrdI GACNNNNNNGTC 1 cut(s) 252
DseDI GACNNNNNNGTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 545
EcoT22I ATGCAT 2 cut(s) 84, 239
FaeI CATG 5 cut(s) 145, 237, 344, 418, 439
FaqI GGGAC 1 cut(s) 484
FatI CATG 5 cut(s) 141, 233, 340, 414, 435
FauNDI CATATG 2 cut(s) 66, 106
FblI GTMKAC 2 cut(s) 5, 111
Fnu4HI GCNGC 4 cut(s) 153, 348, 614, 656
Fsp4HI GCNGC 4 cut(s) 153, 348, 614, 656
FspBI CTAG 3 cut(s) 359, 486, 664
GlaI GCGC 1 cut(s) 421
GluI GCNGC 4 cut(s) 153, 348, 614, 656
HaeIII GGCC 1 cut(s) 514
HhaI GCGC 1 cut(s) 422
Hin1II CATG 5 cut(s) 145, 237, 344, 418, 439
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HinfI GANTC 3 cut(s) 38, 482, 569
Hpy166II GTNNAC 3 cut(s) 6, 112, 444
Hpy188I TCNGA 7 cut(s) 31, 43, 574, 592, 610, 634, 652
Hpy188III TCNNGA 2 cut(s) 47, 536
Hpy8I GTNNAC 3 cut(s) 6, 112, 444
HpyAV CCTTC 3 cut(s) 279, 461, 536
HpyCH4V TGCA 6 cut(s) 82, 145, 237, 326, 476, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 353, 622
HpyF3I CTNAG 6 cut(s) 156, 573, 589, 609, 631, 651
Hsp92II CATG 5 cut(s) 145, 237, 344, 418, 439
HspAI GCGC 1 cut(s) 420
Kzo9I GATC 3 cut(s) 43, 170, 393
LmnI GCTCC 2 cut(s) 58, 212
LpnPI CCDG 3 cut(s) 528, 549, 597
Lsp1109I GCAGC 2 cut(s) 139, 334
LweI GCATC 1 cut(s) 490
MaeI CTAG 3 cut(s) 359, 486, 664
MalI GATC 3 cut(s) 45, 172, 395
MboI GATC 3 cut(s) 43, 170, 393
MboII GAAGA 3 cut(s) 29, 62, 403
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 2 cut(s) 43, 393
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 5 cut(s) 72, 194, 276, 327, 556
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 4 cut(s) 251, 385, 504, 631
Mph1103I ATGCAT 2 cut(s) 84, 239
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 2 cut(s) 87, 146
MunI CAATTG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 221, 353, 622
NdeI CATATG 2 cut(s) 66, 106
NdeII GATC 3 cut(s) 43, 170, 393
NlaIII CATG 5 cut(s) 145, 237, 344, 418, 439
NlaIV GGNNCC 1 cut(s) 547
NsiI ATGCAT 2 cut(s) 84, 239
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 38, 569
PkrI GCNGC 4 cut(s) 154, 349, 615, 657
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PpuMI RGGWCCY 1 cut(s) 545
PsiI TTATAA 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 545
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 1 cut(s) 545
PspPPI RGGWCCY 1 cut(s) 545
PsuI RGATCY 2 cut(s) 43, 393
RseI CAYNNNNRTG 2 cut(s) 87, 146
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 4 cut(s) 153, 348, 614, 656
Sau3AI GATC 3 cut(s) 43, 170, 393
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 476
SduI GDGCHC 1 cut(s) 358
SetI ASST 4 cut(s) 217, 271, 364, 377
SfaNI GCATC 1 cut(s) 490
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 2 cut(s) 87, 146
SphI GCATGC 1 cut(s) 145
Sse9I AATT 5 cut(s) 72, 194, 276, 327, 556
SsiI CCGC 3 cut(s) 139, 614, 656
SspI AATATT 1 cut(s) 95
SspMI CTAG 3 cut(s) 359, 486, 664
TaqI TCGA 1 cut(s) 256
TasI AATT 5 cut(s) 72, 194, 276, 327, 556
TauI GCSGC 2 cut(s) 616, 658
TfiI GAWTC 2 cut(s) 38, 569
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 510
TseI GCWGC 2 cut(s) 152, 347
TspDTI ATGAA 5 cut(s) 30, 105, 176, 484, 555
TspRI CASTG 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 2 cut(s) 276, 556
XceI RCATGY 1 cut(s) 145
XmiI GTMKAC 2 cut(s) 5, 111
XspI CTAG 3 cut(s) 359, 486, 664
Zsp2I ATGCAT 2 cut(s) 84, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.