Rroxscaffold_1G00003870
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000469
Physical Location & Seq
Forward (+)
5136923 .. 5138216
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003870.1

Sequence Viewer

Length: 249 bp
ATGCCTAATTATCCTCCAAGAAGACAACGACGTATCCCTATTGCATGTTGTGTTTTACACAATTTTATTTGGAAGGAAGCTCGTCGCGACAGATTGTTTGAAGCTTTTGACGTAGAAGATATGATTTTTGAGGAGGAAAACAGTACACCAGCGAACTTAGATATGTCACAAGAGAACCTTACACAAATGGCTAATGTTAGAAATGAAATTGCAGAAGACTTGTGGCAAGATTTTATCCCTCACCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

82

Amino Acids

9.86

Weight (kDa)

4.74

Isoelectric Point (pI)

80.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 80, 104
AluI AGCT 2 cut(s) 80, 104
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AsuHPI GGTGA 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 28, 222
BciVI GTATCC 1 cut(s) 44
BfuI GTATCC 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 28, 222
BseRI GAGGAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 87
Bsp68I TCGCGA 1 cut(s) 87
BspFNI CGCG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 157, 246
BstFNI CGCG 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 48
BstUI CGCG 1 cut(s) 87
BstV2I GAAGAC 2 cut(s) 28, 222
BsuI GTATCC 1 cut(s) 44
BtuMI TCGCGA 1 cut(s) 87
Csp6I GTAC 1 cut(s) 144
CviAII CATG 1 cut(s) 45
CviJI RGCY 3 cut(s) 80, 104, 191
CviKI_1 RGCY 3 cut(s) 80, 104, 191
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 2 cut(s) 157, 246
FaeI CATG 1 cut(s) 48
FaiI YATR 3 cut(s) 46, 122, 164
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 1 cut(s) 44
Hin1II CATG 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 102
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 2 cut(s) 33, 87
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 31, 111
HpyCH4V TGCA 2 cut(s) 44, 212
HpyF3I CTNAG 2 cut(s) 157, 246
HpySE526I ACGT 2 cut(s) 31, 111
Hsp92II CATG 1 cut(s) 48
LpnPI CCDG 1 cut(s) 162
MaeII ACGT 2 cut(s) 31, 111
MaeIII GTNAC 1 cut(s) 165
MboII GAAGA 3 cut(s) 33, 128, 227
MluCI AATT 3 cut(s) 7, 61, 207
MnlI CCTC 4 cut(s) 24, 124, 127, 249
MvnI CGCG 1 cut(s) 87
NlaIII CATG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 165
NruI TCGCGA 1 cut(s) 87
NspI RCATGY 1 cut(s) 48
RruI TCGCGA 1 cut(s) 87
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SetI ASST 5 cut(s) 34, 82, 106, 114, 180
SgeI CNNG 8 cut(s) 30, 57, 93, 98, 161, 182, 232, 239
Sse9I AATT 3 cut(s) 7, 61, 207
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 2 cut(s) 34, 114
TasI AATT 3 cut(s) 7, 61, 207
TatI WGTACW 1 cut(s) 143
TseFI GTSAC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 219
XceI RCATGY 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.