FvH4_2g11121
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000469
Physical Location & Seq
Reverse (-)
9703922 .. 9704722
801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11121.t1

Sequence Viewer

Length: 576 bp
ATGGCTGTATGCAACTTTGACATGCAATTCACTTTTGCATGTGTGGGATGGGAAGGCACTGCTCACGATACAAGGGTATTTCAATCAGCAGTTCAAAATCCAACCTCGAATTTTCCTAAACCTCCAAATGGGAAATACTATGTGGTGGATGCAGGATACCCACAAATCAAAGGGTATTTAGGACCGTATAAATGTCAAAGGTACCATCTTCCAGATTTTCGCAGAGGTGCCCAACCAACAGGTTATAAAGAGGTTTTCAATCATGCACATTCCTCCCTCAGAAGTGTTATTGAACGAACTTTTGGAGTATGGAAAAAAAGATGGAATATTCTACGGGACATGCCTACTTATCCATTTGACAAACAAGTGAAAATTGTTATAGCAACAATGACACTACACAACTACATAAGAAGGTATTCCCAACGTGACTGTGTTTTTGATGAAAGTGAAAATCTGTATGATATTGAACAGATGGGAAGGCAGCCTGAAGCAGAAGATCGCAATGGTCATGTTTCAAGAGAAATGGAGGCCTTGAGAAATAGTATCGCTGCAAGTTTAATGGGGACACCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

192

Amino Acids

22.15

Weight (kDa)

8.86

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 2 - 134 2.4e-20 DDE superfamily endonuclease
DDE_Tnp_1 PF01609 4 - 130 2e-07 Transposase DDE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43722 AT3G30525 AT5G28730
fragaria_vesca FvH4_1g10461 FvH4_1g19401 FvH4_2g04530 FvH4_2g04530 FvH4_2g11121 FvH4_2g13361 FvH4_3g21471 FvH4_3g26161 FvH4_3g29911 FvH4_4g20922 FvH4_4g30624 FvH4_5g23912 FvH4_6g30381 FvH4_6g53026 FvH4_7g00061 FvH4_7g19211 FvH4_7g19211
malus_domestica MD06G1090500.v1.1 MD08G1193900.v1.1 MD11G1151600.v1.1 MD16G1281600.v1.1
prunus_persica Prupe.1G096200_v2.0.a1 Prupe.1G189200_v2.0.a1 Prupe.1G198400_v2.0.a1 Prupe.6G167200_v2.0.a1 Prupe.6G192900_v2.0.a1
pyrus_communis pycom02g00900 pycom06g03500 pycom07g13740 pycom11g10040 pycom17g21680 pycom520g00090
rosa_chinensis RchiOBHm_Chr1g0354781 RchiOBHm_Chr2g0085491 RchiOBHm_Chr2g0103971 RchiOBHm_Chr2g0145791 RchiOBHm_Chr4g0414051 RchiOBHm_Chr4g0419691 RchiOBHm_Chr4g0435871 RchiOBHm_Chr6g0292381 RchiOBHm_Chr7g0199291
rosa_laevigata RLG00000035604
rosa_multiflora Rmu_co8287949.1_g000001 Rmu_sc0000079.1_g000057 Rmu_sc0000240.1_g000063 Rmu_sc0000552.1_g000020 Rmu_sc0000950.1_g000002 Rmu_sc0001257.1_g000003 Rmu_sc0001597.1_g000014 Rmu_sc0001939.1_g000006 Rmu_sc0002160.1_g000015 Rmu_sc0003526.1_g000015 Rmu_sc0005712.1_g000025 Rmu_sc0006032.1_g000011 Rmu_sc0006935.1_g000005 Rmu_sc0008636.1_g000002 Rmu_sc0009205.1_g000006 Rmu_sc0009438.1_g000007 Rmu_ssc0000486.1_g000013
rosa_roxburghii Rroxscaffold_1G00003870 Rroxscaffold_1G00014970 Rroxscaffold_3G00218750 Rroxscaffold_5G00367160 Rroxscaffold_7G00186480
rosa_rugosa Rorug05G0192000
rosa_samantha Rh4BG219200
rosa_wichuraiana Rw1G010350 Rw1G014480 Rw1G023690 Rw1G033480 Rw2G050290 Rw3G027480 Rw4G033650 Rw5G005670 Rw5G021010 Rw5G021860 Rw5G041260 Rw5G041760 Rw6G008410 Rw6G021080 Rw6G022950 Rw6G025480 Rw6G028700 Rw7G002710 Rw7G004940 Rw7G031510 Rw7G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 2 cut(s) 201, 227
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 6 cut(s) 83, 95, 259, 293, 467, 516
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AoxI GGCC 1 cut(s) 528
ApeKI GCWGC 2 cut(s) 481, 548
ApoI RAATTY 1 cut(s) 109
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 1 cut(s) 415
Asp718I GGTACC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BanI GGYRCC 2 cut(s) 201, 227
BbvI GCAGC 2 cut(s) 493, 535
BccI CCATC 4 cut(s) 42, 213, 315, 466
BciVI GTATCC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 2 cut(s) 482, 549
BlsI GCNGC 2 cut(s) 483, 550
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 203, 229
BmsI GCATC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 508
BseGI GGATG 2 cut(s) 53, 154
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 2 cut(s) 493, 535
BshFI GGCC 1 cut(s) 530
BshNI GGYRCC 2 cut(s) 201, 227
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 1 cut(s) 496
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 203, 229
BspT107I GGYRCC 2 cut(s) 201, 227
BsrDI GCAATG 1 cut(s) 508
BssMI GATC 1 cut(s) 496
Bst4CI ACNGT 2 cut(s) 186, 431
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 53, 154
BstKTI GATC 1 cut(s) 499
BstMBI GATC 1 cut(s) 496
BstNSI RCATGY 3 cut(s) 25, 42, 343
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 493, 535
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 530
BtsCI GGATG 2 cut(s) 53, 154
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 202
CviAII CATG 5 cut(s) 22, 39, 263, 340, 509
CviJI RGCY 3 cut(s) 5, 484, 530
CviKI_1 RGCY 3 cut(s) 5, 484, 530
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 507
FaeI CATG 5 cut(s) 25, 42, 266, 343, 512
FaqI GGGAC 1 cut(s) 350
FatI CATG 5 cut(s) 21, 38, 262, 339, 508
Fnu4HI GCNGC 2 cut(s) 482, 549
FokI GGATG 2 cut(s) 60, 161
Fsp4HI GCNGC 2 cut(s) 482, 549
GluI GCNGC 2 cut(s) 482, 549
HaeIII GGCC 1 cut(s) 530
Hin1II CATG 5 cut(s) 25, 42, 266, 343, 512
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 3 cut(s) 65, 212, 516
HpyAV CCTTC 3 cut(s) 47, 405, 471
HpyCH4III ACNGT 2 cut(s) 186, 431
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 6 cut(s) 12, 25, 38, 152, 266, 551
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 5 cut(s) 25, 42, 266, 343, 512
KpnI GGTACC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 496
LpnPI CCDG 4 cut(s) 138, 225, 225, 498
Lsp1109I GCAGC 2 cut(s) 493, 535
LweI GCATC 1 cut(s) 139
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 425
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 2 cut(s) 200, 506
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 3 cut(s) 26, 109, 372
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 7 cut(s) 115, 132, 218, 244, 283, 287, 520
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 1 cut(s) 557
NdeII GATC 1 cut(s) 496
NlaIII CATG 5 cut(s) 25, 42, 266, 343, 512
NlaIV GGNNCC 2 cut(s) 203, 229
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 3 cut(s) 25, 42, 343
PceI AGGCCT 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 415
PkrI GCNGC 2 cut(s) 483, 550
PsiI TTATAA 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 203, 229
PspPI GGNCC 1 cut(s) 182
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 2 cut(s) 482, 549
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 1 cut(s) 182
SduI GDGCHC 1 cut(s) 232
SetI ASST 9 cut(s) 107, 124, 203, 229, 244, 255, 416, 427, 571
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
Sse9I AATT 3 cut(s) 26, 109, 372
SseBI AGGCCT 1 cut(s) 530
SspI AATATT 1 cut(s) 328
StuI AGGCCT 1 cut(s) 530
TaaI ACNGT 2 cut(s) 186, 431
TaiI ACGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 26, 109, 372
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 2 cut(s) 481, 548
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 109
XceI RCATGY 3 cut(s) 25, 42, 343
XmnI GAANNNNTTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.